Gene detail

Detail information of Am03G009440.1 Annotation

Gene ID	Annotation
Am03G009440.1	auxin response factor 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G009440.1	mRNA	Chr03	25123772	25129050	-

Sequences

CDS:

>Am03G009440.1
ATGGCATCATCAGAGGCAACTACGAAGGGGAATTGTATGAACGCTACGGCCGAGGGTCAGAATTCTCAGTCGCCGACAACGGCGAGAGACGCGGAAGTAGCGCTTTTCAGGGAGCTATGGCTTGCCTGTGCCGGACCGCTTGTCACGGTTCCCCGGGAGGGAGAACGTGTATTTTATTTCCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACGAATCAGGTGGCAGACCAGCATATGCCAGTGTATGATCTCCCAGCCAAGATCCTTTGTCGGGTCATCAATGTGCAGCTGAAGGCGGAGCCGGACACAGATGAAGTGTTTGCACAAGTGACCTTACTTCCGGAGCCAAATCAAGATGAGAATGCTGTGGAGGAAGAGCCTCCACCGCCTCCGCCCCCGCGATTTCACGTGCATTCTTTCTGTAAAACTCTGACGGCCTCCGATACCAGTACCCATGGGGGATTTTCCGTGCTGAGACGGCATGCCGATGAGTGCCTTCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAATTGGTGGCTAAGGATTTGCATGGGAATGAGTGGCGATTTAGGCATATCTTTCGGGGTCAACCCCGTAGACACTTACTTCAGAGTGGTTGGAGTGTTTTTGTAAGCTCCAAAAGGCTTGTTGCTGGGGATGCGTTTATCTTTCTAAGGGGTGAGAATGGAGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAGCAGGGTAATGTCCCGTCCTCAGTTATCTCTAGCCACAGCATGCATCTTGGTGTCCTTGCAACTGCTTGGCATGCTATCTTGACGGGAACGATATTCACTGTTTATTACAAACCTAGGACCAGTCCTGCTGAATTTATTGTTCCATATGATCAATATATGGAGTCTCTGAAAAACAGCCACACCATAGGGATGCGATTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAACAGCGGTTTACTGGTACCATTGTTGGAATAGAAGATGTTGATTCCAAAAGATGGAGAGAATCCAGATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACACCTCGTCCTGAGCGAGTTTCCCCCTGGAAAATAGATCCTGCTCTTGCTCCTCCAGCTCTGAATCCACTTTCAATTGCGAGGCCTAAAAGGCCTCGGTCTAATGTTGTTCCTTCATCCCCAGATTCTTCTGTTCTTACACGAGAAGCATCGTCTAAAGTTTGTGCAGACCCTTTACCAGCAAATGGTTTTTCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAACGACTCTGATACTGTTGATAAGTCTGTTGTTTGGCCACCTGTCCCAGATGATGAAAAAGTTGACGTGTCTACTTCAAGGAGGCACGGGTCGGAGAGCTGGATGTCAGTGGGGAGGAACGAACCTTCATACTCCGATCTTCTTTCAGGCTTTGGGGTCACTGGACTTTCTTCTCATCCATCCTTGGTTGATCAAATGACCTCTTTAGCTTATCCTGCTAGAAAGCATTCAGCTGATCACGAAGACAAACTTAATGTACGTCATCCCTGGCATGCAACGCCTTCTGGTCTATCATTAAACCTCATGGACAATAACACGAAAGGTACTGCTCATGGCGGTGATAAAACTTACCAAGCTCGAGGAAATTTGAGGTACTCTACATTTGGAGAATACCTCGTGCTCCAAGGTCATAAAGTTGAGCATCCACATGGAAACTTGATGCCACCCCCATTCCCAACTCAATATCAGAGCCCTTGTTCAAGAGAGCTAATGTCAAAACCAATGACAGTGAAAGATTTTGAGGCTTTGAAACCAAAAGATGGTGATTGTAAGCTTTTTGGCATCTCACTTATCAATAGCCCCACCGCACCAGATCCCTCTGTATCACAAAAAAATGTGACAATTGAGCCAGCTGGTTCAGTGCATCCTACATCACACCAACAAACTTCTGAAAATGATCACAAGCCAGATAACTCGAAGACCTTAAAACCGGTCGATGGTCTAGTTGTCATTGATGACCATGAAAAGCCATCACAAACTTCTCAGCTGCATCTGAAAGATGTTCAATTCAAATCACTCAGTTCTGCGAGGAGTTGCACTAAAGTTCACAAGAAGGGTATTGCTCTTGGGCGGTCAGTGGACCTTACAAAGTATAGTGACTATGGTGAATTAGTTGCTGAGTTAGATAGGCTGTTTGAATTCGAGGGTGAGCTAATGTCAACAAAAAAAGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGCGACGATCCATGGAAGGAATTTTGTGCTATGGTTCGGAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAACCCAGGTACTTTGAGTTCAAAAAATGAAGAAAGTCTGTCAGCCAGTGAGGATGCAGATGCAAAAGAAGTCAAGGGTCAGCTGCATAAGTTAAGTTCAGACAATGGTGTCGATGCCTGA

Protein:

Promoter(3k):

>AM03G009440.1
GAACAAAAGGAGCAATTCCCCTCGGCACAAAGTAAGCCCTGAAATTTCGAATCAAGAAGAAAAACAGGCTAAGAGACAAAATAAACAACGAATAAAATACAAGCAAAGTTCCAAGGACATGCCCAACCCTAGAGCAGGCAACGCCCATGAGGGCATCTGACAGGGCGCCAAGGGCAAAACAGGCAGCGCCCATGAGGGCGCCAAGGCCAAAGCAGGCAGCGCCCATGAGGGTGCCTGACAGGGCGCCAAGGGAAAACAGGCAGCGCCCATGAGGGCACCTGGCAAGGCGCCAAGAGCAATGCACAAGACGGCACCTAAGGGGCCCAGGAGGGCGCCAACCCTATTTCGCAACACGGCGCCCAAGGCGCCCAGGAGGGTGCCACCAACAGAAGAAAAGAAACAACAAACACTCACCAGGGAGGAAAAATGTTGAAGCAAGTAGATTCTACCTCCTTTCCACTCTTCAAGTAAGCGCTACAAAGATAGCTTGATCCCTACTCCTCCACTCTTCAAGTAGGCGCTACAAGGATAGCTTGATCCCTACTCCTCCACTCTTCAAATAGGCACTCCAAAGATAGTTTGATCCCTACTCCTCCACAAAATTTCAAAGTGTGGACCACAAGACGAAGACTCACCTATTTATAGAGGATAATTAGGTGAGGATAAAACTTATTATTTTTTGCTCTAGAGAGTAGAAACCTAAAAACACAGTCGTTACAAAGGCAGTGTCCCGCGCGACCTCCCAAATTCGACAAATCGACGAAAATCCTTCAAGCCAAGACCATCCTCCGGAATAATCTCGGCTTGGGGGGCAACTGTTCTGGACTGGACCAAGAGGTCCATTTAGCAATACCAGGAGGTGCGTTTAGCAATTGGATATGGATCAGCCCAATCGATTCGGCCCATATCCACAACATACAAGCCCAATCCATTTGAATGGTTAAGATCGCTTCCACTGATCCGACAATCCACAACGAACATCGATTTCCTATAAATACCAGCTCGCATAGCCATTTACGAGGTACATACTCTTTGCCCTGACAAATTCACTAGCCTATTCTCATACTGACTTGAGCGTCGGAGTGGCTTTGCAGGTACCCCCCGGGTGCTCACTACCTCCAGCTAGGACAGCAAGAGACCTACCAACAGCAGCCACATAATACTGCTAGGTACAGAACACATACTGAATCAAATATTACAAGACTTTACAAGTTGATGTTTTTGCTCAACTACACTCTAATCTCACCACACTCTTCTCTCTATGATAACTCTCTAGAGTTCGATGTGAATTTTAACTGTGTGCCATAATAGCGCCTAGCTAAGACTTTATATAGGAAGATTACAAACAAGAGGTAGTTACGATGGACTAACTAACTCTTAACAACTAACTTCGTATCGCTTAGCTAACTAACTATTTCTCACTAACTTAACTAACTTTTTAGGGACATAGTTTACAACAATTATCCACCTTGTATCTAACAAAGCAAGTCCCTTTACTTAAAAATTTTCTAGACTTTTAATGTGATTGGTACAAGACTTCTTGAATTGGGGTTTTGCCCAAATCACACTCAATTAAGCTGTATCGACTACTTTACCTTATCATCTATTTCAATATCCTATTGAGTCACATCATCTTGATGCTCTTGTTGAGATCCTGAATCACCATTACTACCGGTTTGATCCACCTCAACCTCATTCTCTCTTGAAATCAAATTCTGAGTTAAACGAATCTCGTTTCATTTTTTGTGTGATACAACCACATAGGTTGAGTTCAACTCAAAATTATTAGGCATAGATGAATTTGCCACTTGGAAAGAGTCATAAACACCCTAATTAATGCCAAAAGAAGTAAAAAAAAATTTAGAAAGAAGAAGAATCTTTAATGCAGCCTTAACGAGAATGATATAGGATAAAATTTTATCAATAATTGAGATTTAATATCAATTGATTCAATCTAAATTATTCATAATATTTTACATAATATCCTAAAATAAATTTAAGTGATACATCCGTGAGGAGTTACATGTTCTCTCGCCCTAAAAACAGGGTGTTATCAGTTTGATAATATTTCCATTTTTATTTAGGCGAATGCCGCCGACATATTCATATTTTCGTGGAGATAACGTGCGTAATAAAGCAAAGGCATGGTAAAATCTCGTGAGATCGAGATATAGGAAGGAGATATGGGACGACAATCGCAGTTCACCTCACAGTCGCGTGGTGCCCAACAAAGGAAAAAGGGAAAGCATGGTTAACATGCGCCGAGGGGGTTAGATGCGCACAGTGTGGAAAGGAATTACTACACCCCCATCCCATCCCATCCATCAAGCCCTGCCCGTTAATAGCACGACAGTGCCCATTTCCCAATAAAAACAGAACAACTTTCCCGCGAACGTCACGACACACGCCGTTACATGCCAATCCAATGGCACTTCGACACCACGTTAACGCCGTCTGTACCCTACTCTGTCCCCAGCCGCCTTTATTTATGGAAAAACTTACCCCTTTGCTTGTGCGTTGTTATAACCGGCTATTTCCGGTCAGAAAAGGAAGTGTAACCGCCAAATGCCCGTTCCCACTCATCGGTTAAGGGATTGACCGTGGTTGAAATCATTGCACTTTGTTTTGACCACTGGTTAACTCTCTCTTCTCTCTCTCTCAGAAAAAAAAATCACACCACACGCTTTCTGGTTTTGGTTTTGCTGCAACAAATTCTCACAGTTGAGAGACACAAACGGCGAAAGCTGTATTGAACGGAGAGAGATTGTTGAATTATGTCCTTGAGAAAGGACTGAATTGGTGTTTAAGCTTTGTTCCGAGTTCTGAGCTTTGAAATTATGTAATTCCGGCAAGAGAGTGAATTTTCGAGAGTTTCTTCGTCTTTTTGTTTTGGCTTGTTGAGAAGCAGTGAAGATGTCACGTTAGGAGAAGCGAGGGTTTCAAGGTTGCAGAATTTCGTCAAGTGTTTCAGATGAGAGATCTGTGGTGAGGCCTGTTGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06507.16	Auxin_resp	267	349	1.20E-34
PF02362.24	B3	141	242	1.00E-22
PF02309.19	AUX_IAA	707	794	1.40E-12

Gene family

Gene family	Subfamily
Transcription Factors Family	AUX/IAA
Transcription Factors Family	B3
Transcription Factors Family	B3-ARF

Gene Ontology

GO term	Description	Category
GO:1903288	positive regulation of potassium ion import across plasma membrane	Biological Process
GO:0010150	leaf senescence	Biological Process
GO:0009737	response to abscisic acid	Biological Process
GO:0008285	negative regulation of cell population proliferation	Biological Process
GO:1902679	negative regulation of RNA biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR000270	PB1 domain
IPR015300	DNA-binding pseudobarrel domain superfamily
IPR003340	B3 DNA binding domain
IPR010525	Auxin response factor domain
IPR044835	Auxin response factor
IPR033389	AUX/IAA domain

trEMBL

trEMBL term	Description
A0A4D6NNM0	_

SwissProt

SwissProt term	Description
ARF2A_SOLLC	Auxin response factor 2A

KEGG

KO	Description	Enzyme
K14486	auxin response factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G62000	auxin response factor 2
Medicago sativa L.	MsG0480023564.01.T01	_
Oryza sativa L.	LOC_Os12g29520.4	auxin response factor, putative, expressed
Cucumis sativus L.	Csa005276	_
Glycyrrhiza uralensis Fisch.	Glyur000260s00013528.1	_
Codonopsis lanceolata	Cl_chr02_09640T	_
Arachis hypogaea L.	AH08G29450.1	Auxin response factor like

Expression pattern