Gene detail

Detail information of Am03G009360.1 Annotation

Gene ID	Annotation
Am03G009360.1	pre-mRNA splicing factor-related

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G009360.1	mRNA	Chr03	24931299	24936091	+

Sequences

CDS:

>Am03G009360.1
ATGGTCTTCATCGTGCCACCCAGCGGCAGAACCTTATCCTTAGACGTAAACCCTAACACCACCACTCTCCATCACCTCAAGCATGAAATCCAACAAATCCACGGCATACCTATTTCGCAACAACGCCTATTCATTTCGCAGAGTCTCCAATTACTCGGAGAAAACGATTCCCTTCTAATCTCTAATCTTGGCGTCGGATCCTACTCAACCCTAACCCTACATGTCCCTTTTTTTGGTGGAACTCAGCCTCCGGCAGTTCCCAAACCCCGATTCGATTTCCTCAACTCGAAGCCGCCTGCTAATTACGTTGCTGGACTTGGTCGTGGTGCCACCGGATTCACAACCCGTTCCGATATCGGTCCTGCCCGTGCTGCTCCTGACCTTCCTGATAGATCAGCTACTGCCATCGGCGGCGCTGCCCCTGCCGGTGGTGCCGGAAGGGGGAGAGGGAAGGGAGGTGAGGACGAAGAGGATGAGGAAGGGGAAGACAAAGGATATGATGAGAATCAGAAATTTGATGAGTTTGAAGGTAACGATGTTGGGTTGTTTGCTTCAGCTGAATATGATGAGGATGATAAGGAAGCTGATGCTGTTTGGGAAGCTATTGATAAGAGAATGGATTCTCGGAGGAAGGATAGAAGAGAGGCGAGGTTGAAGGAGGAGATCGAAAAGTATAGAGCTTCTAACCCTAAAATTACTGAGCAATTTGCTGATTTGAAACGCAAATTGTATACACTCTCTGCTGATGATTGGCATAGTCTTGAGAAGTTTGAGAGTGGGGGTTATTCATCAAGGAATAAGAAGAAGAGGTTTGAGAGTTTTGTGCCTGTTCCTGATACCCTTCTCGAGAAGGCAAGGCAGGAGCAAGAACATGTGACAGCATTGGATCCTAAGAGTAGGGCAGCGGGAACTGAAACTCCATGGGCACAAACACCAGTTACTGATTTGACTGCTGTTGGTGAGGGCAGGGGTACTGTGTTGTCATTGAAATTGGATAGATTGTCGGATTCGGTTTCAGGGATGACTAATGTGGATCCTAAGGGGTATTTGACTGTTCTAAATAGTATGAAAATAACTAGTGATGCTGAGATTTCAGATTTTAAGAAAGCCAGGTTGCTGCTCAAGAGTGTTACTCAGACAAATCCGAAACATCCTCCTGGTTGGATTGCGGCTGCGAGGTTGGAGGAGTTGGCGGGCAAGCTTCAGGCTGCGAGGCAATTGATACAGAAGGGTTGTGAGGAATGTCCCAAGAATGAAGATGTGTGGCTAGAGGCTTGTAGGTTGGCAAATCCCGATGATGCGAAGGCTGTAATAGCTCGGGGTGTTAAGTCAATTCCAACTTCTGTGAAGCTGTGGATGCAGGCTTCAAAACTAGAACATGATGATATGAATAGGAGTAGGGTGTTGAGGAAAGGGCTGGAGCACATTCCTGATTCAGTTAGGCTGTGGAAGGCTGTTGTGGAGCTTGCTAATGAAGAAGATGCAGGGCTTTTACTTCACAGGGCTGTTGAATGTTGTCCCTTGCATGTGGAATTGTGGCTTGCACTTGCCCGGTTAGAAACTTATGACAATGCTAAGAAGGTTCTCAATAGGGCAAGAGAGAGGCTACCTAAAGAGCCAGCCATATGGATAACGGCTGCCAAGTTGGAAGAAGCTAATGGGAATACATCCATGGTTGGCAAGATTATTGAGAGGGGTATAAGGGCTTTGCAGAGAGAAGGTGTGGTGATTGATAGAGAAGCTTGGATGAAGGAAGCAGAGGCAGCAGAACGAGCTGGTTCAGTAGCTACTTGCCAAGCAATAATCCACAATACAATTGGAGTTGGAGTTGAAGAAGAAGATAGGAAGAGGACATGGGTAGCCGATGCGGAGGAATGCAAGAAAAGAGGTTCTATTGAGACTGCCAGAGCTATATATGCTCATGCCTTGACTGTCTTTTTAACTAAGAAGAGCATATGGCTCAAAGCAGCACAACTTGAAAAGAGTCATGGTACTAGGGAATCTCTTGATGCATTACTTCGTAAAGCAGTTACTTACAGACCACAGGCTGAAGTTCTTTGGCTTATGGGTGCCAAAGAGAAGTGGCTTGCTGGGGATGTGCCTGCAGCTCGTGCAATTCTCCAAGAGGCTTATGCTGCCATTCCCAATTCCGAGGAAATATGGCTCGCGGCTTTCAAGCTGGAATTTGAAAATCATGAACCTGAAAGAGCTAGAATGTTGTTGGCTAAGGCCAGAGAAAGAGGAGGTACAGAGAGAGTCTGGATGAAATCAGCAATTGTTGAAAGAGAACTGGGAAACATTGAAGAGGAAAGGAGACTGTTAAATGAAGGACTGAAGCAATTCCCTTCATTCTTTAAATTGTGGTTGATGCTTGGCCAGCTTGAGGAACGACTCGCTGAAAATGCAAAGCGACAGGGTCAGCCTGAGAAGCGGCATGATCAAATGATGGAAGCCAAGAAGGTTTATGAATCGGGTTTGAAAAACTGCCCCAATTGTGTACCACTTTGGCTCTCTCTTGCTAATCTTGAAGAGGAGATGAATGGGCTGAGTAAAGCTCGTGCAGTTCTCACAATGGGTCGAAAGAAGAATCCTCAAAACCCTGAACTCTGGCTTGCTGCTGTGAGAGCGGAATTGAAGCATGGATATAAGAAAGAAGCTGATATTTTGATGGCAAAAGCATTGCAAGAGTGTCCGAACAGTGGTATTCTGTGGGCAGCTTCAATTGAGATGGTTCCTCGTCCCCAACGTAAAACAAAGAGTATGGATGCACTAAAGAAATGTGACCATGATCCCCATGTTATAGCTGCTGTGGCCAAATTGTTCTGGCACGATAGGAAGGTGGACAAAGCTCGGACTTGGTTGAATAGGGCTGTGACGCTTGCCCCTGACATTGGGGATTTTTGGGCCTTGTGCTACAAATTTGAACTGCAGCATGGAACTGAGGACAGCCAGAAGGATGTATTGAAGAGATGTGTTGCTGCTGAACCAAAACACGGAGAGAAATGGCAAGCAATCTCAAAGGCAGTGGAGAACTCTCACCAACCGACGGAATCCATCTTGAAGAAAGTGGTGATTGCACTTGGGAAGGAAGAGAATGCAGCTGAGAATAGTAAACATTGA

Protein:

>Am03G009360.1
MVFIVPPSGRTLSLDVNPNTTTLHHLKHEIQQIHGIPISQQRLFISQSLQLLGENDSLLISNLGVGSYSTLTLHVPFFGGTQPPAVPKPRFDFLNSKPPANYVAGLGRGATGFTTRSDIGPARAAPDLPDRSATAIGGAAPAGGAGRGRGKGGEDEEDEEGEDKGYDENQKFDEFEGNDVGLFASAEYDEDDKEADAVWEAIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLKRKLYTLSADDWHSLEKFESGGYSSRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAGTETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGMTNVDPKGYLTVLNSMKITSDAEISDFKKARLLLKSVTQTNPKHPPGWIAAARLEELAGKLQAARQLIQKGCEECPKNEDVWLEACRLANPDDAKAVIARGVKSIPTSVKLWMQASKLEHDDMNRSRVLRKGLEHIPDSVRLWKAVVELANEEDAGLLLHRAVECCPLHVELWLALARLETYDNAKKVLNRARERLPKEPAIWITAAKLEEANGNTSMVGKIIERGIRALQREGVVIDREAWMKEAEAAERAGSVATCQAIIHNTIGVGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKSHGTRESLDALLRKAVTYRPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNIEEERRLLNEGLKQFPSFFKLWLMLGQLEERLAENAKRQGQPEKRHDQMMEAKKVYESGLKNCPNCVPLWLSLANLEEEMNGLSKARAVLTMGRKKNPQNPELWLAAVRAELKHGYKKEADILMAKALQECPNSGILWAASIEMVPRPQRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQHGTEDSQKDVLKRCVAAEPKHGEKWQAISKAVENSHQPTESILKKVVIALGKEENAAENSKH*

Promoter(3k):

>AM03G009360.1
CCTTGATCCCTTTTCTTTACCCTTCTCTTTCTTGTTGTTTGCTTTCCAGTTTTTCTTAGAGGAGTATGATAACAAGGCTTGTTCAGTTTCTTTCTCTGAACTTTTCTGCCTTATTCTCAATTCATGAGCCTCTAAGGAACCTTGAAGTTCATCTAACTTCAATTCATCTAGGTTTTTGGATTCTTCAATAGCAGTAACAACATAGTCGAATTCCTGGGTTAAGGATCTAAGCACCTTTTCGACTTTACTTGTTTCCGACACAGTTTTACCATTGCCTTTCATTTGATTAGTTAAAGCTACTAACCTCGTAATGAATTCTCCAATTGATTCTCCATCTTTCATCTTCAAGGCCTTGTACTATTTTCTGAGCGACTGTGGGCGTATCTTCTTCAGTTTATCTGCTCCTCCATACGAGTTCTTGAGGACATCCCACGCTGCCTTTGCTGAATCGCAATCAATGATCAGGTTTAGGATGTTGGTATCAACACTTTGGTGAATCAAAAACAACCCTTTTCCATCTTTCTTTCTCAGCGAATGGTGGTTGTTCCTCACCGTTTCAGTGGCGTTTGCTGCCAATGGTGGAACACCATCATTCACGACATCAAGAACATCTTGATACCGAAACAGGACCTTCATCTGCGCGCACCACCGTTCGTAATCTTTTCCATCAAAGATGGGGAGGTTCCCTGGAATACCTCCACCAGAGTTATCACGCGTTGCCATGAGTCTTGAAGGATCTTGAAGGATCTTTAAAGCTTTGATACCAGTTTGTTGGGGAAAACGGCGGAAGGGGTGAGGGAAAGGAGCGAAAGCGCTAAAGAGAAGAGAAAGGTAGGGCAAGACAATGATGCAGTAAAACTGAATTATGAAACTGTATTGTATAAAATCGTTCTCCACAAGAATCACATATAACTGTACATGCTACTACGTATATATAGATAAGTCAGACCCATGATTTCGATCAGACCCACACTTTCGACTAGGCCCATAATAGGCCTACTTACTACACCTATCTGTATTACTAGCGCCTACCTATATTTACAAGCAATTGAATTACAAAACATATCTCAATAATTATCTCATTCCATTTTTACTCCTTCCTGCTAGTGCTAGCACCGTGTCAGTCCGTTCCATCAAAAAACAAAAGCACCGTCGTTCCCTATTTCATGGAGCAAACATATACACCACCCGATAGCATATACAGCAGCAACATTTTTTTCTCTATCAAACCATTCTTCTTCTTTTTCATAACATTCTCCATTAAGTTCTATAATTTTGTTTGAACATCCTTACGTTTAGATAACAGGTCGTACTGGAAAAAACATATCAAGGTATATTTCCAAAAGTATTTTGGTGTCTGACATATTCATGACAAAACAATATTGATGAATCATGACAAAACAAGTAGCATTTAATCAAGCATACACATTCGAATAGAGAAAAAACAAATGTCATCATAATAGTTCGTGAATGAGATTGAATGAGGAGGCCAAACAATATTACATCACTACATGTAATGGAGAAAGAAGAAAAATGGTAGCTAGCAAGAAAGAATTTGTCGATTTTGAGGGAAGGAGGAATATGATCTTATCGTATCAATCAATTTTAAAAAGGAAACATTATCTCGGTCGATACTTTCAGGTGACAATATTTTTTTATTTTCTAACTTAAATAGCAGTACCGTTAGATCTTTTAAATTAAATGGTTTAGATTTGGTGTACACATGGTGTCAACGGATAGGGAGAATATCAGGTGAGAACTAGTTTTTACTGCGAAATGAGAGAATATCAGGTGAGAACTAATTCTTACTGTGAAATGTGACAACTCTTAATTATAACCGTTAGATTACAATTAACTGTTCATTAATTACAAATTGTTTCCTTATTAATTAAAGATCACATAAGATATAGTAATTAATAACGTAATTTGAACGATTATTTTAATCTAACCAGTGTTATGGTTATGAGTTTGAATTTATAGAATGAGTTAGTTAATTATGTTAATATTGTTTGAGTTATTTTAGATATTTTTAAAGTATGGTAAATAAATCATTTACTAGTTATTAATAATGTCACGGGTAATGCGATGACGACAATCCAACCTTTAACCTAGTACTTTGACTGAGTGCCGATTTTAATAACTATGACTTTAAATAACATTTTAAAAAATGTTATAAACTTGTAAAAGAATGTTTTAAGTTGTACTTAGCACTTAAAAACAATATGTGTGTTTTTTTTTTTGTTTAAATCAGGTATCCTCTGCGCGTAATTGTAGAGACTAATCTCTCGAGTCGGGTAACACCATAATGGGCTGCAAAGCTCTATCTCAAGAAATTTAAAACAATATGTGTTTAATAAGCTAGCAAAGAGTAAAATATTCATTAAATCGTTACCTTGATGTCAAAAAAATAAGTGAGTGTTTGGTTTTGCGTTGATGAAAATTGATTATATGAGAAGTGATTTGGTTAAAAGTAACTTGGATATAACTTGACAAATGTTTGGATATATTTTTGAAAAAAGTTATTTTAATCAATTCTTTTTGTTAGGATGGTAGTTTCCAAATTGCTTTTGAATGTAAGATTACCAAAATAACCTTTTCTTTCAATAACATTTTTTAATTAACTAATTTGGTTATGTATAATATTAATTTACTACAAAATATTTTTTCTATGTTCTTTTTACCATTGTAAGTTTTTTTTTTTTTTGGTCCAAGTTTTATTTCTTTTCAAGATTGTAGTGATTTCAACGTTAGGAGTTAGGACAATTTTTCTAGTCAATATCGTTGTTAACGGGTCACCGGGTTAAAAAAAATACACTACACCGCCATTGTTAACCCAAAAAGAGACTACACCGCCGTTCAATTCATTATTCGGTTAAAAAAAATACTCTGCGAAATCTTGTTCCAGTTTCATGTTATTCTTCTTCGCCAGAGAGTATCGAGACACCACGTTTCGTTCTTGCTTCATATTCTGAAACCCTATTCACTCTTACACCCATAGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06424.15	PRP1_N	98	255	3.70E-50

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH35

Gene Ontology

GO term	Description	Category
GO:0046540	U4/U6 x U5 tri-snRNP complex	Cellular Component
GO:0080188	gene silencing by siRNA-directed DNA methylation	Biological Process
GO:2000630	positive regulation of miRNA metabolic process	Biological Process
GO:0000398	mRNA splicing, via spliceosome	Biological Process
GO:0022618	protein-RNA complex assembly	Biological Process

InterPro

InterPro term	Description
IPR029071	Ubiquitin-like domain superfamily
IPR000626	Ubiquitin-like domain
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR010491	PRP1 splicing factor, N-terminal
IPR045075	Pre-mRNA-splicing factor Syf1-like
IPR003107	HAT (Half-A-TPR) repeat

trEMBL

trEMBL term	Description
A0A1S2Z355	_

SwissProt

SwissProt term	Description
STA1_ARATH	Protein STABILIZED1

KEGG

KO	Description	Enzyme
K12855	pre-mRNA-processing factor 6

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G03430	pre-mRNA splicing factor-related
Medicago sativa L.	MsG0180000621.01.T01	_
Oryza sativa L.	LOC_Os10g35550.1	pre-mRNA-processing factor 6, putative, expressed
Cucumis sativus L.	Csa008549	_
Glycyrrhiza uralensis Fisch.	Glyur000009s00001448.1	_
Codonopsis lanceolata	Cl_chr05_45470T	_
Arachis hypogaea L.	AH03G40480.1	Protein STABILIZED1 like

Expression pattern