Gene detail

Detail information of Am03G009300.1 Annotation

Gene ID	Annotation
Am03G009300.1	ubiquitin-conjugating enzyme 27

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G009300.1	mRNA	Chr03	24561059	24565898	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G009300.1
TCTCCCCCTCCCTTTTTTATTTTATTTTTCTTTTAATTAGTTTATTTTTAAATATTAATGATAATTATTTTTCACTAGTTGCGCTCTTCATTTTTTTTTCGTTGTCAACTTTTCGTTCATATTCAAAACAGAAAAACAAAATAATCATTTTCCTCCAAAAATAAAAATCTTATTTTCAAGATAGGGGACTAAGTCGACTGTACAGTCGGGTTAGTCTGCTTTTTAGGTCACTAATGAACCGTTACGGATCATGTCCTAAAATCCCTATTTAAAACAAACAATTTCTAAATTAAAATAAACACAAACACATTTCTTTCCACAAATCAAATTTTCAAAATAGGGAATTAAGTCGGCCGTACGGCCGGGTTAGTCAGTGTTCTAGGACGAGTGAGCCGTACGGCCCAATAGTCCTAAAAGCCTATTTTAATAAAATCAAACCACCATACATCAAACCATTTTCCAAACTTCAAAAACTCCATTTTCAGAAAATAGGGGACTAAGTCGACCGTACGGACGGGTTAGTCATCGTTTTAGGACGGATGAGCTGTACAGTACAATAATCCTAAAACCCCTATATTAAAAAACACCAACCAACAAACATTTTCTACCCAAGAACTACGTGTGATTTGATTCTCTACCAAGAGATACGTAGGAGCAGAGGGCGGCCGACCTCTGTCAATTGCACTAATAAAAAACCTTTTTCAGTCTTCTCCTAAATAATCATTTTCTTAAATAAAATATCAATTTTCTTCTTTCTTTTTAATTCACAATAAAAGGGTAAAAATAAATGTTTTCAAAATTAACTTTCGTTTCTACAACTAATTAGCAGGTAACTTTCCTTAGGAAGGATGTCGTGGGGTGCTAATACCTTCCCCACGCATAACCGACTCCCGAACCCAAATCTGGTCTCAAGGACCCTTATCCATTCCAAAAGGGATTTTCCAATATTTGCCCTTAAACTAAACTTTGGTGGCGGCTTCATTTTTGAACCTTCGAGGAATCCTATCCCGGATTTTTCGGTCGCTACAACAAGTAATAAAAAGGGATGAATAAACAATTCAAAGATTGTTAAGGTTTAAATATATAAATTATATTGAATACAATAGACGGCCCAATGCGGGTGGATATATAAATTATATCAAAAGGATGAGTGACGACCCAGTAGATTAGTATACTAGGGGAGGGGAAGTCATGAGCCCCAGAACCTAGACCTTAGAGGTTTGAAGCTAGTGTAAGCTAGTGGAGAGGTTCGAAGGCAAAGGCAGACCTTTTTCCAGAGATGTACTATGGCATGAAAGGAAAAGATATATGCACGTAGGCCCTTTATGGACTATGATTAAAGAAAAAGAAATAAAAGGACCGAGAGTTATTGTGAGGGGTTACGGTAGGACTCACTGAGATAATGTTTATCTCACCCATTGTATGTTGTTGTTTTACAGAGAAACAGGGAAAGAAGAAAGCGACGAGGCACGAGTAGGTGACGTGCTAGAGGACAAGTTAGAAGACTTGGTTCTTTTATCTTTGATATTGAGTTCCCTAGTTGTCTTTGTAACTCGATAGTATGACTTGAATTTATTTAAGTTATGTAGTCGTTTCCGCTTTTTCTTGTGATGGTATTGAACACTAGGTTATAAAGATATTGAAAGACATGGAACCTATATGGTTTTTATTTAAGTTATGGAAGGTAAGACTGTTGATGTTAATCATCGAGAAAAATTTTAGTCGCGTTCAATATCTAAACAGGAAATATTACTCTGATGTATGCCATTTCGTGCACCTTAGCATTTCTATTTGATAGAAATATTAGGGTGTTACAACAAGTGTGTTTTAAATGTGAGATAAAAAAATTTAAGAGGTGAGAGAGAAAGTGGGACCCACAAAAATAAAATGAGATAGAATAATTATGGATTTCCAAATTTTCCCTCAAAAAAACAAAAAATTAAGTGGGCAATATGGTAATTTGATTAGTTTATTGTTTTCTTAAATAGATATTTTAGATACGGATAGTATGGTACTTTTTTTTTTTTGACAACAATAGTATGGTACTTTTGATAGTGGTTGAGTCGATTAAATAGATACTTGATAATTGAAAAATAGGTAGTTGATGATTAAATTTTGATTAAATAGATAGATCAAAAAAATAAAATGTGAAGAGAGAGAGAATAGAGAGAGAATAGAGGTGGGAAAGATAGAGAGAAATTTGTGAAAGATAAGAGTGAGAGCGAAGTACAAAAGTGGGTTTTAAATATGAGATTAAAAAATTTATGAGATGATGAAAGAAAGTGGGACCCACAAAAAAAGATAGAATAATTATAATTATAAATTTACAAAAAAGCCCTCATAAAAGTAAAAAAGTAAATGGGCAATTTAGTAAATTCACTAACCCTAAATTTTCTTATATAGTTATAATCAAAACATATGCTACCACATTTACATTTTTAGACATCACCAAATTTTGACATTTGTCACAATTTAGGGGCAAAATAGTCAATTCACCACATAAAGACAAAATGCTACAGTATCACTACAGTGCGCTACAGTGACGTTTCTGACACGCTACAGTACCGCTTATGTCACTCTACAGTACGCTACAGTGACGTTTCTGATGCGCTACGGTACAAATACAGTTTTTTTTTTTAAATTCAATTTTTTTTTAAAAAAAACTGATTAGTTGATGAATTAATTAAATACTAAAAAAGAGTTGGAAAACACTCGCCACTCGGTGCTAACAATTGACTATCTATCATCATCATCCCTCACTTGTAAAAGGTGAAAAAGCAACCAAACGGGCTTTATTCTAAACTTGCTTCTTCTGTAAAGCACCAAGGTGAGTGAATGAGTGACTGAGTTGTTGTCCTTCCTTTCATTCACATTCACATTTCTTTCACGGCGACGCGGCGTGTGATAACACCTTATATTTCTGTTGTTGTAGTTTTCTCTGTTCTTTGTAAACGAGTCATTCTCAGCGTCTAGGGTTTGCTGATTGATTTCAGATTGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00179.29	UQ_con	6	144	2.60E-43
PF00627.34	UBA	157	191	5.70E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	UBC

Gene Ontology

GO term	Description	Category
GO:0000209	protein polyubiquitination	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0005524	ATP binding	Molecular Function
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR016135	Ubiquitin-conjugating enzyme/RWD-like
IPR023313	Ubiquitin-conjugating enzyme, active site
IPR000608	Ubiquitin-conjugating enzyme E2
IPR015940	Ubiquitin-associated domain
IPR041974	Ubiquitin carrier protein 27, UBA domain
IPR009060	UBA-like superfamily

trEMBL

trEMBL term	Description
A0A371HPE2	_

SwissProt

SwissProt term	Description
UBC27_ARATH	Ubiquitin-conjugating enzyme E2 27

KEGG

KO	Description	Enzyme
K04649	ubiquitin-conjugating enzyme (huntingtin interacting protein 2)	[EC: 2.3.2.23]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G50870	ubiquitin-conjugating enzyme 27
Medicago sativa L.	MsG0080049061.01.T01	_
Oryza sativa L.	LOC_Os01g70140.1	ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed
Cucumis sativus L.	Csa005285	_
Glycyrrhiza uralensis Fisch.	Glyur000139s00009299.1	_
Codonopsis lanceolata	Cl_chr01_05510T	_
Arachis hypogaea L.	AH18G34280.1	Ubiquitin-conjugating enzyme E2 27 like

Expression pattern