Gene detail

Detail information of Am03G008900.1 Annotation

Gene ID	Annotation
Am03G008900.1	isoamylase 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G008900.1	mRNA	Chr03	23360096	23380425	-

Sequences

CDS:

>Am03G008900.1
ATGCTTCACCAGCAATTACTCTTCAGTTCAAGACTCGCAACTCAATCTACACTCCTCCCTTCCGTTTTTCCCGGCGGTAACAACGCTATTCGCACTTCACTTGCCGGAAATTTGTCTGCTTCTGATATGAGTAGGTTGAGTTTTAGTAAGCAAGCATCTGGAAGCAAATCGAATAACAATGGCCGTGGAGTTTTTAGTGAGACAAGGGAAGTAGCCAAGCTTATTACAACTAATGCTTATGGTCGTGCTCAAGAAGGAGCGCTTAAGGAAGAAGCCTTCAAAGCAATAGAAAACAGACCATCATGGGAAACTTTCCCAGGCCAAGCATTTCCGTTGGGTTTATCACAGGTCGACAATGGGATCAATTTTGCTATTTTTTCACAGCATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCCGAGAGAGGAAGCATTGATACACTAGATGGTGACATGATAGAACTGGCTTTGAATCCCCAGTTGAACAAAACAGGGGACATTTGGCACATATGTATTGAGGATCTTCCTAGGAGCAATGTTCTGTATGGATATCGGATAGATGGACCTCAAGACCGGGGTAAGGGGCATCGATTTGACAGCAGTGTTGTGCTTGTTGATCCTTATGCCAAACTAATTGAAGGTCGAAGATATTTTGGGGATAGTAGCAAGAAGTTGTCTAAGTTTCTTGGCACGTATGATTTTGACAGCTTGCCTTTTGACTGGGGAGAAAATTACAAGCTTCCAAATATTGCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGGTTAGATAACAACATTCGTGGAAGCTACCTTGGTGTGATTGAGAAGATCCCACACCTTCTAGAGCTTGGTATCAATGCAGTGGAGTTTCTGCCTGTCTTTGAATTTGATGAGTTCGAATTACAGAGGCGTCCAAACCCCAGAGATCACATGATTAATACGTGGGGTTATTCAACAATAAATTTCTTTGCTCCAATGAGTCGCTATGCTAGTGCGGGTGGGGGACCTGTTAATGCTTCCCAAGAGTTCAAGCGAATGGTTAAAGCCTTACATTCTACTGGAATAGAGGTAATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGACAATCCTTACACTACTTCATTTCGAGGCATAGATAATCAGGTTTATTACATGCTGGACAATAAAGGACAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGCAACCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTCGATTTGATCTCGCTAGTGTCATGTGTCGAGGAACCGATGGTTCCCCCCTCAGTGCTCCCCCACTCATTAGGGCAATTGCTAAAGATGCAGTCTTGTCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGAAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAGTTTATCAAGGGTGATTCTGGTATGAAGGGGAGCTTTGCAACTCGTGTTTCCGGGTCTTCTGATCTTTACAGAGTGAACAAGCGTAGACCATATCATAGTATTAACTTTATTATTGCACATGATGGATTCAGCTTGCGTGATCTTGTTTCATACAACTTCAAGCACAATGAAGCTAATGGGGAAGGTGGAAATGACGGATGCAATGACAACTTTAGCTGGAATTGTGGTTTTGAAGGTGAAACTGACGATGCTAGTGTAAGAGCTTTGCGGTCAAGGCAAATGAAGAACTTTCATTTGTCATTAATGATATCCCAAGGTACACCAATGATGCTAATGGGGGATGAATATGGACATACTCGCTATGGAAATAACAATAGTTATGGGCATGACTCTGCCATTAATTTTTTCCTCTGGGATCAGGTGGATGCAAGGAAGAGTGATCACTTCAGGTTTTTCTCCAACGTGATAAAGTACCGGCATGCACATAAAGTACTAAGTCATGAAAATTTTCTCGGCGAGAATGACATAACATGGCATGAAGACAATTGGGACAATTATGACAGCAAATTCCTTGCATTTACGCTTCATGACAGTAGTGGAGGAGATATCTATTTGGCCTTTAATGCTCATGACTACGTTGTTAAAGTACTGCTACCGACACCCCCAACAAAGAGAAGCTGGTTTCGCGTGGTGGACACTAATCTTAAATCTCCCAATGACTTCGTCCTCGATGGGGTCCCAATAGAAAAAGCGTATAGTATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA

Protein:

Promoter(3k):

>AM03G008900.1
CTTCTCGAAAACCATGGTCACACGTTTTTTGTTATCGAAAGGAAACTTATTAAAAACCGTTTTCTCCAAAGAATCGTGACTTAAATCATATGCTGTGTGATTGATTGTGTTGGAACGCTATGATATATTATTTTAATGTGTGATTAAGATTGGGTCTCGATCGGAAGGGATTTTGGAATCGGAACGGAATGGATTACTCATGAAAATACTATTTTCTGGAAAACTGATAGAGACGCACGGATCGTGTGCCTACGAGCACGGGTCGTGCGCCTCCCTCTGATACGACAGGAACTGGATTTTTAAAACACGCACGGATCGTGCGCCAAGTCGCACGGGTCGTGCGTATGTCTCTGGAACTTTATAAAATTTTAATGGATAACGCACGGATCGTGCGCCAAGTCGCACGGGTCGTGCGTATCTTTCTGGAAAATTTCTACAAACTGTTCAAAAACGCACGGGTCGTGTGCCTACACGCACGGGTCGTGCGAGACCTTTTGACCTTCAATTTCAAAGTACCTTTCTATCCATTCCAAATGATCCCAATCCTCTTCTAATCCATTCCCCAAGGTTCCACAACAAGGTAAAGGTAAAAATGGTATGGGATTGAACATGTTCGATAGAAAGTTTGTGTGTTATGAATAAAATAGAAAACCGCTCTTAGAGAACGCGAGAGTGCAAATGTCAAAGAATGATAATAACACACGGTACTTGACTGATATTATACACTGTAATTGACTGTTATGGTACATGGTACTTGACTGGAATGACTAACAGCCCATTGCGGGTACACAGACTGAAAATGTATAATAAATACAAGAGGAAAAAGGGTGACGACCCTAAGAGGTTAGCATACTAGGGGAGGGGAAGTCATGAGCCCCAAAACCTAGACTCAAGAATGTTTCCCCTGCTAGAAATAGCAGGATGGGTTCACCAAAGTCAAGAGATGCCTATAAAATAGGTAGACTGAGGTGTTATGCTAAAAACATGGAACAAAGATTGCATGCTTCATGTGTCGCTTAGGAGGGCCATGAGCATGGAGGTTACAGGAACTGAATGTATTTCCACGTGGTTGCTTTTTAGGACCACGAGTTCAAAACAAGGCATAATGAACCGCTAGAGTTGTAAGGGGTCTCGATAGGACTCACTGAGATAATGTTTATCTCACCCTTCATATTTGTGGTTTTTACAGAGAAACAGGGGAAAGCAAAGGCGGTAAAGCATGGTTAGCTGGTGTGACTCTTGGAGTCATTGAAGACCTAGTTTAATGTTTTAGACCTTTGTTCCGTTTATTGTTTCTATGTTCCGATTGTATAACTTTCATTGTCAAGTTGTAAAATCGTTTCCGCTACTTTATGTTTTGAGTATTGAACACCAGGATATGTACAAGTCTTAAGTTTTGGAACTTAAGCATTTTCAGAAAGTTTATGAGGTTCAGAGAACCAGTTATTATGTATTATCTAAAGTTTTAGATGTGTTCAATATTTCAATAACAGGAAGTTACTCTGATGTATGCCATTTAGTGCATTTCGATGATTCTATATATTAGAATTTATCGGGGTGTTACACAAAGTGAACGAAAGTGAAGGATAGACTTACATAATTTGTTTTTGATCAATATTCTGGGTTTGCAATTGTTTTAAGTTGTTGTTCCTGGTTCAGATTTCGTTTTCGATTTGTTTTTGTTTTCGTTTGTTTCGATTTCGTTTCGTTTTCCATTTTGATTTCGTTACAAATCTGAAATGTTGGAAACTTGCGTACAAGAAAGATGAAGAAGGAAGAAGGAGGAAGAAGGAAGACTTCGTTACAGATCTGAAACCCATTTTGATTCTGGGTTTCCATTTTGATTTCGATTTCGTATTCCATTTTGGTTACAGATCTGATGGTTACAGAAGGAAGAAGAAGGAAGATGAAGAAGAAGAAGGAAGTTGAAGATGGATGTGTAACTGAGTTTTTTATTTAAATAATTTTTTTTAAGAAAATCTACTTGGAAATACCACATCAGCACCTTTAATGCCATCTCAGCACTGTAACAGCCACGTCACTTTTTTTTAACGGAGTTAAGAGGAAACTTAAAAAAAGGGTAAAGTTGCTTAAAATTTGAAAGATAAAGGTCTAATTTGGGACAAAAAAAACATAAATGACTAATTCGTTACTTTAAATAAAGATAAGAGACCCTAGGAGCACTTTTGCCTATAAATTTCATACCCGTAAAATTAATAACTATGTTTATTTTATATCTACTAAAATATAAAAATATAAAAATTAATATATTAATTTATTAATATTTTTAAATTTATTCATATATAATATTAATCTATTTTAGATCACCTAAATTAATATGTACTTAGCAAATATGGTGCTTGTTTTTGCTAATAATGCAATAATTGAAAAGAAAAAGATGAAAAAGAGCAAAAGAAACAAATTAAACGAAGTCGTTTTGATAAAATAAAAATAAAAAATTAAATGCACAACCCGATTCGGGTCAAGTCGGGTCACCGGTTCGACCGGCCGTGCCGGTTTTTAAAACTTTGGGTAGAAGAGTGGGAGGGAGTATAGAGGTTTAAGCTAGGGGTATTTTAGGATTTTTGAAAATGTGGGGGGGGGGGGGGGGTGAAGGAGTAGAAAAGTTCTCGAATGGTCACAAATAAAGAACTCATCAAATCCGCGGAAAGACACAAGAAGCGAGATATTTTGTTTTAGGAAAAAGAAAAAAGATTCAGACACGTGTAGAGCAGAGGGCGAAAACACTGGAGTCGACTGATGGCGCCCGCTTTCCTCTCATTTCCCGAACCAAGCTTCACGTGGCAGACATGAACTTCCCATTGCTTGCTTCCACTTCCACGCATCACTCGTCTCTTCTCTAGTAAATAGTAATAATCACAATCCCATTCCCAGCACCTCTTCAAACTCCCCACTCCTCACTCTGAATGCGAAAACCCAATCCACCATCTCTCTCCTCTCACTCGTTACCGAAACTGAATTCTCTCGAATCAGTTCAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00128.27	Alpha-amylase	280	635	7.00E-17
PF02922.21	CBM_48	111	209	2.60E-13

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	CBM48

Gene Ontology

GO term	Description	Category
GO:0009507	chloroplast	Cellular Component
GO:0005975	carbohydrate metabolic process	Biological Process
GO:0043036	starch grain	Cellular Component
GO:0009057	macromolecule catabolic process	Biological Process
GO:0009059	macromolecule biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR013783	Immunoglobulin-like fold
IPR014756	Immunoglobulin E-set
IPR006047	Glycosyl hydrolase, family 13, catalytic domain
IPR013780	Glycosyl hydrolase, all-beta
IPR004193	Glycoside hydrolase, family 13, N-terminal
IPR017853	Glycoside hydrolase superfamily
IPR044505	Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain

trEMBL

trEMBL term	Description
G7J3Z4	_

SwissProt

SwissProt term	Description
ISOA3_ARATH	Isoamylase 3, chloroplastic

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G09020	isoamylase 3
Medicago sativa L.	MsG0480023752.01.T01	_
Oryza sativa L.	LOC_Os09g29404.1	glycogen operon protein glgX, putative, expressed
Cucumis sativus L.	Csa002104	_
Glycyrrhiza uralensis Fisch.	Glyur000038s00004469.1	_
Codonopsis lanceolata	Cl_chr02_49140T	_
Arachis hypogaea L.	AH08G07590.1	Isoamylase 3, chloroplastic like

Expression pattern