Gene detail

Detail information of Am03G008450.1 Annotation

Gene ID	Annotation
Am03G008450.1	ubiquitin-specific protease 16

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G008450.1	mRNA	Chr03	21824770	21832697	+

Sequences

CDS:

>Am03G008450.1
ATGCGTTTAACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTTTCTGTGGTGTTGCTGGTGATTGCTTTTGTAATTCGCCGTAAATGGCTTCATGCGGCGGCTAGGAATGAGGAGATCAAGAGGCTTTTGATTTTAGCCGCTGAGGAAACTGAGAGGGTCGAGAGAGAAGCATCCTATGAGTACGGTGCTGCAGTTTCGGCCACTAACATCAATCGATGCGCTCTATGCTATTTTCCCGCCAGCGCGCGCTGCAAGCAGTGTAAATCCGTTCGCTACTGTTCTGTGGAGTGCCAAACCGTTCATTGGCATCAAGGTCACAAATTAGAATGCCATCCTCTCAGCAAAACAGACCAGATTGATGGGGCGATAACTGGTCTTGGCAAGAAGGTAGTGGAGCAAGATTACTCCGGTATTCATGATGAGAAATCTGAAAGTGAAGGCAGAGAATGTAAAACACCCTCTGAAAAACCCTCAGTTACTGATATTAGCTTTTCTCCTGAGGTTTCATTCGGAAAGGATGATGATATAAGAGTTGAGTCCCTTGCAGAGGGAAGCTTAACAGATACTAATTCTGAATTATCTAGTAACTCATTTTCTGGATTTTCTGCTTCCGCAAATTCTAGTGATTCATCTGATGATTCCTCTGTATGTGAAAGTATCTTCTCAAATGAGCAAAATAGATCAGAAGGACATATATTTGTTGTTCCCACCCTTGACATCTCTAATAAACCTGCAAGTGATAAAAGCATGGGTGCAGTCATGCCTTCTTCACCCAAGTTTGCCAGTTTGCTTGATTCAGTGGATGGTTCTTCTACAATTCATAAGTTAAATAATATTACATCCTGTTCTAGTAAAGAAGAGAGGGAGTTGACACCAAATGGTGCTTCAGGCTTGAGCATGTTGAAGGGTGTGAAAATTGAGCACTCTGGATTTTGGGATAAAGCTCTTGATTCGAGAGGGATTAAAGACGATTCTAAGAACGGCACTTGTCCATCCCATTCTGATGAATCAATCAGTGAAAAGACTGATTCTGGATGTTCATTTCACTCTTCGTTCAGCACCATGCCTCCTTTGCATGTGCAACACACTAGGCCGAAGGATTCTTTGCCTGATGATAATCTCCCAAACTCTATTGGGAATAATATGCCACGTCCAAGATCAGCATCATCAGAGAATGACAACGTGAATTCTTCAAAGGTGAGGAATTTCTCATTCATCAGCAGCAAAAATTCCAATTTTGCGAGCTATAGTACTCCCAGTGGTTCTGAATGTGATCAATTGCAATCTAAAGACAGCCTGGCACCTTTACCTTCCTTTTCTCCCCAATTATCCAGTGTTGTTAAAGATTCAGGTTCTGCAGATGCTTTGAGCATCCGTAACTTGCAATCAGCTGCCTCTATGGCATCAAATCATGTTTTGGACAACTATGGCTACACCTCGAAGTCCACCAATATCAGATGTCTGACACGTGAGCTTGTTGATTCTAAATTATCTTCTACAACTGAAGGACATTCACTTCCTAGTACAAAACATAGGAATAATGGCATTGAATATGGGACTGTCACTTCTTCTCAGGTTGCCAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTCGTTGATCAGTTTAGTGGATCAAATTTTTCAAAGCATGGGAGTGATATTGCTGGAAGATACAATGACAAGGGTCTTTTTCCATATGAATGGTTTATCAAGCTTTATAACTTCAACAAGGTGGAGTTGCGTCCATTCGGTCTTATAAATTGTGGAAATAGTTGTTATGCTAACGCCGTACTTCAGTGCTTGGCATTTACACCACCCATAACTGCTTATTTGCTTCAAGGACTGCATTCTAAATCATGTGTAAATAAAAAATGGTGTTTCACGTGTGAATTTGAAAATTTGATTTTGAAGTCAAAGTTTTCAAAATCCCCGCAGTCTCCCATGGGCATACTCTCTCAACTACAGAGTATTGGGAGTCAACTTGGTAATGGCAAAGAAGAAGATGCACATGAATTTCTAAGGCATGCTATTGACACTATGCAATCAGTTTGCCTTATGGAAGCTGGAGTTAAAGCATCTGGTTCTTTGGAAGAGGACACTACTTTGATGGGTCTAACATTTGGAGGCTACCTTCGATCAAAGATAAAATGCATGAAATGTGGTGGGAAGTCTGAGCGCCACGAAAGGATGATGGATTTAACGGTTGAGATTGAAGGGGAGATATCAACCCTAACAGAAGCCCTTCGAAGGTTTACAAGCACTGAGACTTTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCGAAGAAGAAGCTGACAATTTCAGAGGCACCCAATATTCTTACAGTTGCATTAAAGAGATTCCAGGTATTTCCTAAATTCAACTACAAGATGTTATTATCTGCATCTTCTGCAGCCTGTATATGCAGAGTTTACTTCATGTTTGTTGCGTTTGTGTTGCAGTCTGGAAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGGACTAGTGATAACACGCCCATATTCAGATTGTATGGAGTGGTTGTTCATTTGGATATCATGAATGCTGCTTTTTCGGGTCACTACGTGTGTTATGTGAAGAATATCCAGAACAAGTGGTTCAAGGTTGACGACAGTGTGGTTACAGCTGTTGAATTGGAGAGAGTTTTGACTAAAGGAGCATATATGCTTTTTTATGCAAGGTGTTCTCCAAGGGCCCCAAGATTAATCAGGAACAGGATACTATCCCAAGATTCAAAAAGTAAAGTCAAATTAGTCAATGGAAAGACTCTTACAACTAAAGCAAGAAATATGTTTACAAATTCTGGTGCGACTGAAGACATTAGTGGTTCGATTTCTCCAGATGGGTCACCCACATTGGAGTCTTTCTATTCAAAGTATCACCATGTGAGAAAAGTTTTAGAAGAAGACTCATCAAGTGATAGTTCATCCCTTTTCAGCAGCAATTCTGATGAAGGTTCTTGCAGCACAGATAGCACCCGCAATTCAACCAGCGCAGATGACTTCTCCGGTTATATTTTTGGTGATTCAGCGCATGGCTGGAGTAGCGTATGGAGGAATTTTGATTCCGACACTTCATCCTCGTCATCTCCCTCGAACTGTAAACATTCACCCCTATCTAATATGGACCGGTATGATTCAGTATCTCCAGATGCAACTGGTTTGCGAATTCCTACTGGTTCAAGTGCAGCAGTAGACAGTCCTTTATACAAAAATAGACGTGGGGATGTTGAGAGGAGTGGGGTAGGTGTTTCTCTTTTGCATTCTGACACAGCTTTACAGCATAGGAAATTAGGAAACAGTAGTAGTAGCATTAGCAACGACAGTACTCGTAGAGAGACTGACACGTTTCTGGAAATAGGATCTAACCATTTTAATGATATGAACTCTGGTGTATCATGTAGAAAGTTAAAGAAAAGAACGGATTGA

Protein:

>Am03G008450.1
MRLTGDLGFSSLVLVVVSVVLLVIAFVIRRKWLHAAARNEEIKRLLILAAEETERVEREASYEYGAAVSATNINRCALCYFPASARCKQCKSVRYCSVECQTVHWHQGHKLECHPLSKTDQIDGAITGLGKKVVEQDYSGIHDEKSESEGRECKTPSEKPSVTDISFSPEVSFGKDDDIRVESLAEGSLTDTNSELSSNSFSGFSASANSSDSSDDSSVCESIFSNEQNRSEGHIFVVPTLDISNKPASDKSMGAVMPSSPKFASLLDSVDGSSTIHKLNNITSCSSKEERELTPNGASGLSMLKGVKIEHSGFWDKALDSRGIKDDSKNGTCPSHSDESISEKTDSGCSFHSSFSTMPPLHVQHTRPKDSLPDDNLPNSIGNNMPRPRSASSENDNVNSSKVRNFSFISSKNSNFASYSTPSGSECDQLQSKDSLAPLPSFSPQLSSVVKDSGSADALSIRNLQSAASMASNHVLDNYGYTSKSTNIRCLTRELVDSKLSSTTEGHSLPSTKHRNNGIEYGTVTSSQVASCSANSKSGLKTSVLKVVDQFSGSNFSKHGSDIAGRYNDKGLFPYEWFIKLYNFNKVELRPFGLINCGNSCYANAVLQCLAFTPPITAYLLQGLHSKSCVNKKWCFTCEFENLILKSKFSKSPQSPMGILSQLQSIGSQLGNGKEEDAHEFLRHAIDTMQSVCLMEAGVKASGSLEEDTTLMGLTFGGYLRSKIKCMKCGGKSERHERMMDLTVEIEGEISTLTEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTISEAPNILTVALKRFQVFPKFNYKMLLSASSAACICRVYFMFVAFVLQSGKFGKLNKPIQFPEILDLAPFMSGTSDNTPIFRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVELERVLTKGAYMLFYARCSPRAPRLIRNRILSQDSKSKVKLVNGKTLTTKARNMFTNSGATEDISGSISPDGSPTLESFYSKYHHVRKVLEEDSSSDSSSLFSSNSDEGSCSTDSTRNSTSADDFSGYIFGDSAHGWSSVWRNFDSDTSSSSSPSNCKHSPLSNMDRYDSVSPDATGLRIPTGSSAAVDSPLYKNRRGDVERSGVGVSLLHSDTALQHRKLGNSSSSISNDSTRRETDTFLEIGSNHFNDMNSGVSCRKLKKRTD*

Promoter(3k):

>AM03G008450.1
ATGAGGAATCAAAGCTTACGTAGTTCTACTGTGTCTTTTGTGAAATGATGCTTATGCATGAATGTCTCATCTTGGATGAATTTGACGAGGATTTTTTTGCATGATTATAAATGAAATGCTTATACTATGCAGATGATAATTGTTTTTGTTTTATCTTTATGTAATGAAAGGGAATGCAAGATGAATGATTTTTTTTCAAAATTGGAACTTTATTTAATGCAAATGACGCAATGACGTAATGATGCAATGATGTGATGATGCAAGGATGCTTCTTTTTTGTGTTTTTCCAGAAAGAGGATATTTACAGGTGGTGATTTGAAAATTTTCACACTATATGCCACCTCATATAGGCGAAAAGGAAAAGCATATCTTTTTTGATTTTCAAAAATTCTGAAGGAAAAATTGATTGAACTGAATGCACCGATGCAACACACAATTTGGAAAGCCCTTGTGACCTAAAAGGGGGTAGAACCTATGATCTAAGGCATTTTAGGGATAATCTTCCCATGTAGCTCTATTCACACACTCACAAGGTCATCAAAGCCACAGTCCCTCTCATGAAAATCCCCGTAAATGCAGCAAACTGCTAGATACGAAGCATCATGAAAGAGCACAACTCTGATTGAAACTTTCGCGAGTAGCCAAACGGACAAAGGTCCTGATGGGGTCCCACTACTCGAATCCACTCATCCTAAGGTATCCTAACAGACCTGGGTTATGGTCTCTTTCTCTAATCATATAATCTCAAGGTACAAGTGTGTGTGCGAAGGGCATTTCCTTAAAAACTACCCCACCTGCAAATGAAAATCCAGAACAGTCCAGACAATAGAAAGCAATAACATGTCGTCTACCCTAGGGTTCAATACCAATCAAATACAACTAATCTAGGGTGCCAACAACAATGCACTACTTACCTCAAGAAAGGGAGCAAAGAAGAAGGGGACATGACAAGAGGGGGGAAATATGCATGAATTTACCTTAAGAAATGGAGCAAAGAAAAAGGGGACATGATATGATTGGGGAAATGCATGAGGGAAATAGGAATATAAGCAAAGAAGTAACTATCTATTATTTTAAACAAAAGCGAGCATAGAAGAAGAATGCATATGGATGCAACATGCTTATGAAAAAGAAGAAGAATAGAGGCAAAGCAAGATGTTCAAATCAATCACACAAACCACACACTTAATTAATTAGGCTTGACCCACTTTTGAAAAAAATGTTTTTTAATCCCCAGTGAAGTCGCCAGCTGTTGCGCCCGAAAAAGTCCCCGAGGGAGAACCTTCCTCGTTCACAACTTTTCCTAAGACAATGAAGCCGCCACCAATATTTATTAAGGAAAATATTAGGAAAACCTTTTTTGGAAAGCGATTGGTCTTGCGAAACTAGAGAATAGGGTTCGGGGGTCGGTTACGCGCAGGGAAGGTGTTAGCACCCCACACGTCCTCTCTACTGAGAGGGAACCTTTAATTAAATGTGTGGTTTTAGTATGTTGACTTGAAAATACTTAATTTTGCCTCTCTACTTCTTATTGAAAAATTCTTAATGAAAATCTTTATTTATTATGAAAAAAGGGGGAAAAATGGTTTTTTAGAAAAAACGTGCTTGACGGGACAAGGCCCGCTCCTACGTATCTCCCGGTGCGATGGAGAACTCAAAGCTACGTAGTTCTTCTTTTTTGGTTTTGAAAAGTTTTTGTTTTTTATCTTTTTATTGAGTTTTCGAAATAGGATGAGCATTTAGTGGATGATTAAACTAACCAAAGTTATGGGTAATCACCGCTAAGTACTCTTGAAAATGAGAGTCACTACCGCCAGTCAGACGAACAAAGGTTCTGATTGACTATTAGTAGCAACCCGTTTTTTATTTGTCTTTTTGAAAGTGGTTTTCGAAAGAGATTGATTGGCACGAATGATCAAGCTAACAAAGGTTATGGGTGATCATCGCTTATTATTCTTTTGGGAAAAAGACATCGCCACCAATGGCTAGACGAACAAAGGTTCTGATTAACCACTAGTTGATCCTACAAGCAACATTAATTTGTAACTAGCGGTATTTATCAAAAAACACGGTAAAGAAGAGTACATAGAAAATTTCTCATCAATAAAGTCAAGTATCCTTTCCTAATAATCAAAAGCCGCGTTTTTCTATATGGCTACGTACCCACCCACACCTAAGCAGACAATTTTACTTGTAAAATGGTTAATTTCATGGAATCTCAGGGTCCACGAGGCAGGCCCCACCTCCACCGTCAGATCCCCGAATCCGAAACCATCAGAATAAACCCGTACTTCGAGGCCCCACTTTCACGTGCGTTCCCAGGCAAGCTTCCAAGTCTCACACACTATACACTCCTCAGCTTTTTCTCAGGTTCCCCTCAACTAACCAAACCGGCATCGAACCGGTTTTTGAAATTCGCAATCCCCGAATATTATTTGAGACTAGGAAGGAAGAAAGAATAAGGATTAATGAAATTTCACGTTTTCCAACAACCAAATTCCTTACCCTAGTATTTGTCGAAAAAAAAAATTCTCTTTCCCTAGTAAATCAATCTTTCCTTCCGTTACCTTCAATCAATATTTTAATTCCATTTCAATTTCCACCTTCTTTATTCACATTTATTTACCGCGTTCTCTTTTTTCTCTCTCTAACTAACCACCCGAAAACCGAACAAAACAATTTACTTTGCCTCGTTCGATTCCAAAGATGCGTTACGCTCCGTCTTTCTGAATTTTCAGTGGCATCTTCAGTTTACTTGCAAACGCGAACAAGAACAAAATAGCAATACGTTTCTCTTCACCTCACGGATTCGATTCTCCTCGTTAATCTCATCGTCACGGGTTGCCACATCTTTCTAACCGTTCAATCACCTGAGGGGTTGGATTTAGGATTTTCTATTTTAGGTTACTTCGCCGTCGCCGACGAGTGCTTCCGTGTGTGGTGGTGATTTAGCGGCTTAGGATTTTTTGCCTACGCTTGATGTGTGTCAGTGGAGGATAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00443.32	UCH	592	926	3.20E-43
PF13423.9	UCH_1	593	907	9.20E-19
PF01753.21	zf-MYND	76	113	3.10E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	USP

Gene Ontology

GO term	Description	Category
GO:0016579	protein deubiquitination	Biological Process
GO:0005829	cytosol	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR002893	Zinc finger, MYND-type
IPR018200	Ubiquitin specific protease, conserved site
IPR028889	Ubiquitin specific protease domain
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765	Papain-like cysteine peptidase superfamily

trEMBL

trEMBL term	Description
A0A3Q7XBA4	_

SwissProt

SwissProt term	Description
UBP16_ARATH	Ubiquitin carboxyl-terminal hydrolase 16

KEGG

KO	Description	Enzyme
K11855	ubiquitin carboxyl-terminal hydrolase 36/42	[EC: 3.4.19.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G24560	ubiquitin-specific protease 16
Medicago sativa L.	MsG0380017077.01.T01	_
Oryza sativa L.	LOC_Os08g37350.1	ubiquitin carboxyl-terminal hydrolase family protein, expressed
Cucumis sativus L.	Csa018616	_
Glycyrrhiza uralensis Fisch.	Glyur000294s00011873.1	_
Codonopsis lanceolata	Cl_chr02_64670T	_
Arachis hypogaea L.	AH00G04730.1	Ubiquitin carboxyl-terminal hydrolase 16 like

Expression pattern