Gene detail

Detail information of Am03G008360.1 Annotation

Gene ID	Annotation
Am03G008360.1	transducin family protein / WD-40 repeat family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G008360.1	mRNA	Chr03	21567864	21582709	-

Sequences

CDS:

>Am03G008360.1
ATGGACTCCATTCCTTTTCGCGATGGCAACATACATAAGATTCTCGACACCCGATACATTGACACTCGCTTGGACGTCAACCATAGTTTGCAGACACACTCCTCGTTGATTCGGAGGCTTTCTCAAGAAAGAGAGTTAGAGGGCCATCTTGGCTGTGTCAATGCAGTGGCTTGGAATTCAAGAGGTTCATTGTTGATATCCGGATCAGATGATACGCACATGAATATTTGGAGCTACTCTGGTCGGAAACTATTGCAGTCAATTGACACCGGACATTCTGCAAATATATTCTGTACAAAGTTCATACCAGAAACATCTGATGAGCTTGTAGCCTCCGGAGCTGGAGATGCTGAAGTTCGGTTATTTAATAGGTCTCGCATAAGTGGGAATGGGTTGAATGATAATGCCGTTGTTCCATCAGCACTTTACCAATGCCACACCCGTAGAGTAAAAAAATTGGCTGTTGAAAATGGAAACCGTAATGTGATATGGAGTGCCAGTGAAGATGGAACTGTAAGACAGCATGATCTCCGGGAAGGTACCTCTTGTCCTCCTGCAGGATCTTCACACCAAGAGTGCCGAAATGTTCTACTTGACTTACGGAATGGAGCTAAAAGGTCACTTGGTGATCCTCCTAAACAAGCCCTTGCTTTAAAATCTTTTGATATTAGTTCAACTCGACCACATTTGCTACTTGTTGGTGGGAGTGATGCCTTTGCACGTTTGTATGATAGAAGGATGCTTCCGCCCCTAAGCTCTTGTAGGAAAAGAATGGCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTGGACATCCGAGTTTGCACTTAACTCATGTTACATTTAGTCCCGATGGATGTGAGGTTCTCCTCAGTTATAGTGGAGAGCATGTTTATTTGATGAATGTAAATCATGCTGGAGTGAATGAGGTGCAATATACTTCAGGAGATGTTTCAAAGCTGATGACTTACTCTCCAACAGTGAATGGGGTAGAATTGCAGCCTTTTGTGTCTAATGTCTTCCCAAATGGTTTTCCTATTAAAAAGAACATTGCTGCGAAGCTTGACAACTGCAGGAAACTAATAAAATATGCTAAGAAGTCATTGGAGGAGGGGACGCCCTATTATGGAATTGAGGCATGTAATGAGGTTTTGAATGGCTACAGTCATATTATTGGGCCTGCACTAAAACATGAATGCTTGTGTACTCGTGCTGCACTATTACTTAAGAGGAAGTGGAAAAACGATGCCCATATGGCTATAAGAGACAGCTATGCTGCTAGGGAAATCGATAATTCTGCGTATAAACCACTATACTACATGTCAGAAGCATTGTCTCAGTTGGGGAAACACAAAGAAGCTTTGGATTTTGCTGTTGCTTCCCACTCGCTGGCCCCATCCAAAGCTGAAGTTGCAAAAAGAGTGGAGAATGTGAAGAAGGATATTGATTTAGCTGAAGCTGAGAAAAATAGTAAGACAAATGATGGAGCATCTAGGTTTGACAATCGAGGTGGAAGAATATTATCATTAAGTGACATACTCTACCGTTCAGATGCTAATAGTGATGCCTCACAAGATGGTCCTAGATCCGATAGAGATGATTCTGATTATGATGAGGAATTGGAGTTGGACTTTGAAACATCGGTATCTGGTGATGAGGGACATGATCCTGAATCAAATATTCTTCATGGGAGTTTAAATCTTAGAATTCATCGAAGGGGTGACTCCAGGGAAAGTGTCAGTGCAAATGGCTCATGTGAATCACCCTCATCATCATCACAGAATAGCAGAGTATCTTATCAGCCTGAAGCAGCTATTGATATGAAGCAGAGATTTATTGGCCACTGCAATGTGGGGACTGATATAAAACAAGCCAGTTTTCTTGGTCAAAGAGGTGAATATGTTGCCAGCGGAAGTGATGATGGAAGATGGTTTATTTGGGAAAAGCGAACTGGTAGACTCATAAAAATGCTGAATGGCGATGAATCTGTTGTAAATTGCGTACAATGCCATCCATTTGATTTTGTTGTGGCAACCAGTGGGATTGATAACACAATAAAGATATGGACTCCAAGTGCTCCTGTTCCATCTCCTGTAGCTGGTGGTTCAGCAGGACCAGAAACTGGTGATGTGTTGGTTGCTATGGAGAGCAATCAACAAAAATTATCCTGTGATCGTGATTCCATCTTGCCCTTTGGGTTTTTGGAACCATTTAGAATGCATGAGTTTCCGGAAGGTTCGCTACGCTTGCGCCCTTTCGAGTGTGCCCAAAGCTAA

Protein:

Promoter(3k):

>AM03G008360.1
CCGATGGTGTCTTCGGTGTCACCGTTGTTGGAGGAAGGGTTCCCTTGCCAGACCCCCTCATGGGCGTTGTCTGATGCTGCCCTGGTGCCCTACCTGGCACCCTCATGGGCGCTGCCTGATGTTGTCATGGCGCCCTGCCAGGCGCCCATGAGGGCGCTGTCTGATGCTGCCCTACCTGGCGCCCTCATGGGCGCTACCTGATGTTGTCATGGCGCCCTCCTGGATGCCAGGCGCCCTCATGGGCGCTGTCTGATGCTGCCCTGGTGCCCTCATGGGCGTTGGCTGCTTCCTTGCCAGGCGCCCTCTTGGGCGCTAGTTGCTTCCTTGCCAGGCGCCCTCTTGGGCGCTGGCTGCTCTTCATTCGCGTCCTGCCAGGCGCCCTCATGGGCGTTGGGATGGGCATGTCTTAGCAATCTGCTGGTCTTCTTGATGGCCAGGAGATCCAAAAGCTGACTCGCATTCGAAGACTGGGCAGGCTGACTGGTACCCTCGTCAGGTAGGGTTGCGACGTTGCCCTCAGGAATACCCTCTGGTCGGGGTGCAGGTATGACAATGCTCTTAACCCGGGGTCTGCCTCTGGGAGCCATGGAGCAGCAAGAGAAAAGTTCGAGTAGTGATGATGTGAAAGATAAAAATCTCCCACTGTGGTCGCCAATGTTCTGTACCGAGCAGCTTTTTGGTCGGCTGCTGTTGGTAGGTCTCTTGCTGTCCTGGCAGAAGGTCAGTGAGCGCCCGGGGGGGTACCTGCAAGCCACTCCGACGCTCAAGTCAGTATATAGAATATATGAGTGAAGGTACTAAGGATCAGAGTTTGAACAGTTTTTTAGGGCAAAGTTTGCCTGTTTTTATAGGAAATCGTGCCCTATCGTGGTTCGTTGGATGGGTAGAGTCGATCTTGACCGTCCAAGCATGTTGGGCTCGCATGAGGTGGATATGGGCTGAATCGGTTGGGCTGATCCATATTACTTGCTAAGCGCACCTCCTGGTTTTGCTAATGGGACCCCCTGGTCGACTCCAGAACATTTCTAAACAGAATTTCCAAGGCAAAATAGTTAGCACAAAACTTCTGCATAATTCCTAGATGTCTTCTAAAGTGAGGGATTAACTAAATTCATCACTGGTGTATCACTCAAATTGATTGTAAGATATAATATAAAATGTTATAAATGGTTGAGATTATCTCATCCATAAAGAAACTCAACAATTCATTGTATTTTACACTGTATCCTATGACCATTTTTAACTCGTACATCAGTGAGAGACTTAGTTGATCCTTCACCCTAACAACCACCCAATTTCTAAACAAAATTTTCAAGACAAAATAGTTATCAAAACATTTTTACAATTTGTAGACCTTCTGCACTATATCTAAACAAAATTTCTAAACTCCTACCCGGCACAATTGGCAGAGTTTTAAACATAATACCTTCTACACAAAATACTTAGAACATAACGTTTAGCATGAAATTTGTGCAAAAGATCACGAAATTGAAGCCGGTGGTGCTAGTTTGCTCTAGTAGAATTAGATTGAAGCTTAAAAAATGGAAGTTAGAGATCAGATGGGGATGAAGATGAAGTCAATATAACTCATTCATGAATGACCAAATTGCTCAAAAAATAGAAATGTAAGGGACTTAGTTGAGTTCCTTAAAATTTGACTCACTTATATGGTCACATAGACGACCCTAAGAGACACATATGCAAACTAACGTGACAATGACATGTTAGCAACCAAATGACTTTGTCCCTTGTTTGTAAATGTATGAGATACGAGATTATTTTGATATTAATTATTCCTGAGATCAAATTATACACCAATTTTTTTTGTTAGAGAGAAAATTGGATACTCACTCTATATTTAAATGAGTTATTAGTCAATTTAGTCTATGAAATGTCATAATAGTTCAATTTGGTTTTTAACCTTTACAATAGATCAATTTAGTCTATCACTTTTGTAAAAATATTTCAATTCAATTTAGTCCATTTTGCAAAAGATAGACTAAATTGAAATTATCAGAAAAACTAAATTGAAATACTTTTACAAAAGTTGGAGACTAAAGAATCTAATAACTCATTTTTTTAGAGACTAAAAAATCTAATAACTCATATTAAATTGAATTTTTGTGAAATTTTAGAGACTAAAAAATCTAATAACTCATTTTTTTTGACAGAAGAATCTAATAACTCATTTAAATACACAGTTTCACACATTCAGAAAATTCCATCCAGACAATCCTCTAACATAGCAATACGATAGTAGGGAAGAGTACAAATCCTCTTTGGTCACTGAATTTCTTTGATAGACAAAAAAAACTCAAAAATTAGAATAATGTTATTTTAATAATTGTATCTACCTCTCTATTAAAAATATCCATTTATCGAAGAGTTAAGTCCGGTATGAAGAGTGATGAAGAGCGCTTGCATATCACGCAAGAGCGCACTCTATCAATAACCAAGACAAAGCTCATGTACTTGCCCTATTTTTGGTTTTGCCAAAATTATAAATCTTTTTTGTTACCATGTATTCATGTAATTGGTGTGTAGTTTCCACCGGTTTTGTCGATGACTAATCTAGGTCGGGGAACCTGACTGGCCACGGGTTTCCGACTTTGCCGGCCCATGTGATTCTCCTCTCCCAATAGAATTTTTGCCACACCCAAAATTCGAACCCGAGACCTAAAGTGGGATTCAAGTCCGGTTACACTTGTAACGTAGTTATTGGTGCCAAGATTATAGAATTTGACATGACATAATATTATTACTAATAAATTATTTACTCACAATTCAAAAGTTTTACAATATTTTATTCATGAAAGTAATTGACATTGACAAATTTATATCATCGTAATTACGAAAAAAGAAGGGTGAAGTGTCTGGGCGTCTGCAGAGTATAACCGCCTCAGCTACAAGCAATTGATGAAAATCACGCTGATCGAGTTCCCTACTTTCGTTTTCACTCAGTACAGACACAGCGATTTCTGAGACCTTCTTCTACAATTT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	43	78	1.00E-16

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:1901000	regulation of response to salt stress	Biological Process
GO:0009788	negative regulation of abscisic acid-activated signaling pathway	Biological Process
GO:0051301	cell division	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR001680	WD40 repeat
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR045151	DDB1- and CUL4-associated factor 8-like

trEMBL

trEMBL term	Description
A0A1S2YBC8	_

SwissProt

SwissProt term	Description
ASG2_ARATH	Protein ALTERED SEED GERMINATION 2

KEGG

KO	Description	Enzyme
K11807	WD and tetratricopeptide repeats protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G10940	transducin family protein / WD-40 repeat family protein
Medicago sativa L.	MsG0380017092.01.T02	_
Oryza sativa L.	LOC_Os03g08830.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa002235	_
Glycyrrhiza uralensis Fisch.	Glyur000236s00014218.1	_
Codonopsis lanceolata	Cl_chr02_64890T	_
Arachis hypogaea L.	AH17G32600.1	WD and tetratricopeptide repeats protein 1 like

Expression pattern