Gene detail

Detail information of Am03G008220.1 Annotation

Gene ID	Annotation
Am03G008220.1	Spc97 / Spc98 family of spindle pole body (SBP) component

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G008220.1	mRNA	Chr03	21180538	21188623	-

Sequences

CDS:

>Am03G008220.1
ATGGGTGCAGAGCCACGACTTTCCCGAAGCTTAGTCAACCGAATCTACGCTCCATTGGCTAATGAAATTCCCTTTTCACCGCCCATCCCCTCCATGCGTACAAATGAACTCGAACTCGTCCGCGGTGTTTTACGAATGCTGCAAGGATTTTCTGGCACGCTGTTCTGTTGGGATAACAGTGGAAATTGTTTTCGTGCCAAGAACGGAGTGTACTTGACTCATCTGTCCCTGAAAAGTCTCCATTCACTCCTCAATCAATTTATCTACGCAGCATCGTGCCTCCAACTGGTAGAGATTACAGTCAATAAAATTGAAACTGCAGTTCCAAAACCTTCTCCCACTTTTAAGGCTTTTGCAACCTCTGCTTCAGCGTGGCTTAAGCGTTTGCGGAATATTGCGCTGAAGGAGGAAGTGTCTATGAACAATGCAGATGGCCTATCCACTCCAACCTTGTTAGGATTGGCAAATTCTTTATCAAGTATTTGCTCGGGTGCTGAGTCCTTATTGCGAATAGTTCATGAGGCCATCCCTGAAGTATATTTTGAGTTTGCATCATTTGTACCTGCAGCAGACCTGGCTGTTCATATTCTTGACTATCTTCATAAGAAACTTGATGAGATGTGTCTTGTACAAGGTGGTGAGGAGGAGGCTTATCAAATGGTGCTTTATATGTATGTGGGAAGCTTATTGCCATATATTGAGGGTCTTGATTCCTGGCTTTTTGAAGGAATACTTGATGATCCTTTTGATGAGATGTTCTTTTTTGCTAATAAAGAAGTCTCAGTTGATGAGGCGGAGTTCTGGGAGAAGAGTTATTTATTAAGAAAGCTACAACCTAGTAAGTTAGATACTAACCTCTCTTCCCCAAATTATGTCAGTGATTTTGTGTCAGCTTCAAATGACAAGAAGGAAATGGGCAGTAGGGATTCCATCTCTTTGCCTAGTACAATTAAAGGAAAAGAGCAGAGAGTTAGAGACTGTCCAGCTTGTCCTTTCTTTATTAAGGATTTAGCCAGGTCAATAGTTTCTGCTGGAAAGTCTTTGCAGCTGATGCGCCATGTCCCGAATTCCTTAGCAGTATGTAGCAAAGGAAGTAATTGTAAGATTGGTAGTACCAAATATTTAAAATATTTGTCTCCTACTCATAGAATGGCTGGGCTAACGTTGTCAGAAATTTTTTCTGTATCACTAGCTGGACTTATTGGTCATGGTGACCATGTTTGTAAATATTTTTGGCAAGACGATTGGTGTGAATCTGTATTTGTTTCATCCTTTGTATCTAATGTCAACAAGGAAAAAACAAACATTGACAACAATGAAAATCTAACTGCCCCACCATACTCGGAGAAGATTTGGTACAAATTTTTGATTGATACAGTATTTCAAAAAAGATCATCTGATTTGAAGCCAAATTTTGAAGACATAAATAATGGCTCGGGAGACCTGAGAGGGGCTAGAGTTGTTGAAGACGAATTTCCCCTCTTGAGATCATGCTTAGAAAACCCAGTTATTACTGTTTGTCGAACAAATATTGGAAAAAACAGGGATGCCTTGAAAACATTAAATTTATCTCGAAAGTTCTGCTTGCCTTCTTTAAATGACGAGAGCTTACGAACGGCTATATTTGGTGGAGAAAGTACAACATTTTCTGGGAGTGAAGGAACAAACTATACTTTCGGTTTTCAGTTTGGTGAATCTGAATACATTCACTCACAGGATGAGAGAAAGCTGTTAGAAACGTTGTTTCCTTTTCCCACCATATTACCTTCGTTTCAGGATGATCTTCCTGTGTCAGAGCTCTTACCTTTCCAGAGAAACAGCACTCTTCCTTCAAGAGTTCTTCATTGGATGCAAAATGTTGACCTAAGAACTACTCCACTGCCTCTGGTTATTATGCAGTACTGCCTAACCGCTTACATTCAGAAACAGGTGGATTATATTGGAGTGAATATGTTGTTAAAGTTGATGAATGAATGGAGGTTGATGGAAGAGCTGGCAGTGCTGCGTGCTATATACTTCTTAGGTTCAGGTGATTTGCTACAACACTTTGTGACTGTAATTTTCAGTAAATTGAATGAAGGCGAAACATGGGATGATGATTTCGAATTAAACACAATATTACAGGAGTCAATCAGAAATTCTGCTGATTGTATGCTGTTAAGTGCTCCAGATTCATTGGTAGTGTCGATAGCCAAAAATCTTGTTGACGGTGATGAGGAAGCTAGTACAGCTGGAACTATTCCTGGTACTCCTCATAAAAGTCATGTCAATAACTTTGGGATTAATGGCCTTGATATGCTCAAATTCACATACAAGGTACCTTGGCCTCTTGAACTCATTGCAAACGCTGAGGCAATTAAGAAGTACAACCAGGTGATGAGGTTCTTGCTGAAGGTCAAGCGTGCAAAATTTGTATTAGATAAAGTGCGGAGATGGATGTGGAAGGGTAGGGGATCTACTACAAATAACAGAAAACATCATTGGTTAGTGGAGCAGAAACTCCTTCATTTTGTGGATGCATTTCACCAATATGTGATGGACCGGGTATATCACAGTGCATGGCGTGAACTGTGTGAACGTATGACTGTGGCCAAATCTTTGGATGAAGTCATTGAAGCCCACGAGACATACATATTATCAATTCAGCGGCAGTGCTTTGTGGTTCCTGATAAACTGGGGGCTCTGATTGCCAGCCGCATTAATAGCATCCTTGGCTTAGCTTTAGACTTTTATACCATACAACAGACGTTAAGTAGCGGTGGAGCTATTTCTGCAATCAAGGCAAGGTGTGAGATGGAAGTGGATCGTATAGAGAAACAGTTTGATGATTGCATTGCTTTCTTACTTAGGGTCTTATCTTTCAAACTAAATGTAGGGCATTTCCCTCATTTGGCTGATTTGGTCACTAGAATCAACTACAACTATTTCTACATGTCTGCTAATGGAAATTTGATGTCCGCCTCCAGCTCTGGAAGTGTTACTTCAAGATTGGGGAAGGCCTCTGGATATCCTGAATTGATTGCCTGTGCCAGCAAGAATTGGAAACAAAAGCCTTTGAACGGAGGTTTAGATAGATCCACATCAAAACCTCCCTTTGATGCATAG

Protein:

>Am03G008220.1
MGAEPRLSRSLVNRIYAPLANEIPFSPPIPSMRTNELELVRGVLRMLQGFSGTLFCWDNSGNCFRAKNGVYLTHLSLKSLHSLLNQFIYAASCLQLVEITVNKIETAVPKPSPTFKAFATSASAWLKRLRNIALKEEVSMNNADGLSTPTLLGLANSLSSICSGAESLLRIVHEAIPEVYFEFASFVPAADLAVHILDYLHKKLDEMCLVQGGEEEAYQMVLYMYVGSLLPYIEGLDSWLFEGILDDPFDEMFFFANKEVSVDEAEFWEKSYLLRKLQPSKLDTNLSSPNYVSDFVSASNDKKEMGSRDSISLPSTIKGKEQRVRDCPACPFFIKDLARSIVSAGKSLQLMRHVPNSLAVCSKGSNCKIGSTKYLKYLSPTHRMAGLTLSEIFSVSLAGLIGHGDHVCKYFWQDDWCESVFVSSFVSNVNKEKTNIDNNENLTAPPYSEKIWYKFLIDTVFQKRSSDLKPNFEDINNGSGDLRGARVVEDEFPLLRSCLENPVITVCRTNIGKNRDALKTLNLSRKFCLPSLNDESLRTAIFGGESTTFSGSEGTNYTFGFQFGESEYIHSQDERKLLETLFPFPTILPSFQDDLPVSELLPFQRNSTLPSRVLHWMQNVDLRTTPLPLVIMQYCLTAYIQKQVDYIGVNMLLKLMNEWRLMEELAVLRAIYFLGSGDLLQHFVTVIFSKLNEGETWDDDFELNTILQESIRNSADCMLLSAPDSLVVSIAKNLVDGDEEASTAGTIPGTPHKSHVNNFGINGLDMLKFTYKVPWPLELIANAEAIKKYNQVMRFLLKVKRAKFVLDKVRRWMWKGRGSTTNNRKHHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCERMTVAKSLDEVIEAHETYILSIQRQCFVVPDKLGALIASRINSILGLALDFYTIQQTLSSGGAISAIKARCEMEVDRIEKQFDDCIAFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSANGNLMSASSSGSVTSRLGKASGYPELIACASKNWKQKPLNGGLDRSTSKPPFDA*

Promoter(3k):

>AM03G008220.1
AAAACGGAAAGATAATATTTTTGAGATTTTGTTAATTAACTGAAAGATAACGTTTGAAAATAAAGAAAGATAAAAGTGATTAGGGTTTGACTCCTCTCCACTCACCTATCTTATGGACCTTCAGCTACTCACATATTAGTTGTTTGGAATACCAGATTCAATTCACAATATTAGGCTAAGGACAATTCCTTGCCTCAAAACCCCTATTACCCTAAGAGTTACCCTAATTCCTTAGGTGAGTCATGCCAGAGGGTAAAGCATTAAAATCAAGAATTAAAGAATTCATGAATCAAACCCCACATTCCTATGGTGATCGGAGTTTCATGATCTAAAACATCATATCAAGTATACAACTCATATCCCTATGTAATCATATACCCTAAATCATTATAATTATCATATGTAACTATAAAGCATTAAACAAGGATGTTTTAAACATATGATAAACCAAACAACCAATAGTCTTAACCATAACAAAGAATCCAATAGATAGGTTTGGGGAGAGTCATCTCTCCCTAATCAAGAGAAACTAGTTACACATCATCAAAAGATTAGAAAATAAGAGTAGAGAAGATTACACATAGAAGAATCTATTAGAACCTTCAAATCCTAAAATCGCATCCCAGATGAAGTGCCGGAGGTACCGCTTTTCTTCTCCTTCGCTTCGTCGTCGTTCACGCCTTACGGCGCTGCTGTGCGTGGTACTTCCATTCCTTGATTCTCCAATCCTTTTTAATTCCAATTCCATTCACGCTCCTGTTCGTTCCTTTCCTTTCAATTCCCTTTTTTTTTTCTTAAGTCCAGCCCACAATTCTCTTGGCCCATCAATAAATTGGCCATTATTCATTTAATTTGGACTTTGCCAATTACACCCCCACTTCTACTACATAAAACTGAAACTATGCCAAATCCCTAGTTATTGGCTGAATAAAACATAAAATGACTAACAAATTGGTTGCAAACTGAATAAAAATATACATATGATGAGGACTCATCACCTACTACTCTCCTCCCTCAATCTCCGCCCTCTTCTCTTCTCCCTCAATCTCGCACTCTTCTCTTCTCACATTGCTCCCTCGTCGCATCTTACGGTCTCCACAGGTAACCATTTCTTTCGTTTTGTCATTCTGCATTTTTTTCTGGTTTTCGCATGGTTCGACGCAGAAGTTCTGAACGGGTTCGAGGGTTAAGTGTCAAACCACCCCGTTTTTTGAACTTTCTGAATTCTAACTGTTTGTTTAATTTTTTTAGTATGGCAAAGACAAGAGGCGGTGGTAGTTCTAGTCAGAGACATGATGATAATGAGAGAGTTCGTCCAATGGCGTTCGTCCACAACAGGAATGCTCAGAATAACCCACGTGCACGTGGACGCGGAAAAACAATCCCACCCCATGCTAATGCTGCATTGCAGTATGATGACTTTGAGCGTGATTCTGAGGACTTTATAGCTGCTGAGTTGGCTGGCCCATCAGAGGCTGAAGACATTGGTGAGGCCATTCACACAGGGGATTAAGAAGTATAGCTGTGTCTACGAGCGGAGAGGGAGGCAGACACAGTAGTCGTATTTTTTTTTGTTTTTTATGAACACATTTTGCTCTGTAAGACATATTTTTGTTGAAAATTAGGCAGTTCAGAAGTTGTTAAAAATATGCCGCTTAGTTAATTTCAGGATTCGTTAGATTATAATAAAAGCTGTCTGTGGTACAGCAGTTCGGTACTAAAACTCCGAACCAGTTCGGTGCCACAAATCCGAACTGGTCCAGTTCGGTGCCACAAATCTGAACTGATTCGGTGCCAACAATCCGAACCTGTTAAAAAACCATAAAAGGGGTGTGCCTGTGCGTAGAAATTAAAAATAACATACTCGGTACTTATGGTCCGAACGGGTTCGGTACTTCTGGTCCGAACCATTGTAAAAACAGAAAAAAAATAAGCGCGCCCAAGATTCATTAATGACAATTTGGTTTTTCACGCGTTTTGGGGTGTCCACTGAGTAGAGGGGTGTTGTACGAAGTATCCCCCAAAATTTTACTGTGAAACGAACAATGCCTAGAGCTGGCAAAACGGGCTACCCGGCCCGCATCGGACCAGCCCATGTCGGGCTCGGACTTTTATGGACTGAGCCAAAAAGCCCGGGGTTGAAATTAGGGCTCAACTTTTAAGGCCCAAGCCCGGTCCTATGCGGGCTTTTCGGGCTAACCCGCATTATGCGCCAACGCTATTTAAAAAAAATACTTTTTTATAAAAATAAAATAAAAACATGTGTTTATTATTTAACCCCACTGTAATGTAGAAAGAAAGAAAAAAGTTAGCATCGTGTGATGCTTTAAAACGCTACTGGAAGAAAGCTCAAGGCGTTTCAAGCACCACAAATTTTGGAAGATGTTATTCAACATAATTACATACCATGATGTCAATGAAATAATATGGAGCCTTTCTCCCGGATAACCTCAATTTTATAACAAGTAGATAAGAGTTTCATGAGAAATGAGAGCATATGCTTCAGCATGTTAAAGTGAATACACGCTTACTGACTTGCACTCTGTGCATTGTGTAATTGTGTTTGGGATTTTGGTATGAGTTACCAATATTGGGCTTTTGGCAGCAATGTAATTTTTTTAAAAAAATTGCGGGCTTGCGGGCTACCCATGGCCCGGGCGGGCTAGCCCGGTGCGGGCCTAGACTTTTTAGGGTCGGGTTAAAAAGCCCGGATATAAAAATGGGCTCAATTTCTTCAGTCCAAGCCTTATGTTTTTCGGGCTAGCCCGGCCCGGCCCAACGGGCCCAGCCCATTTTGCCAGCTTTAACCCTGCCCAGCCCAATTGTGATCTTTAATAGTAGTTCCTTCCGCCATTAACATTTCAAAGCCATATATATACATACACTCCACCACAGTCCCCCCTCACTTTCCTTTCTTCCCCTCCCTTCCTCAGAAAACAATTTTCTCCGCTCACCACCATAGCATAGCATGAGCGTTCGCTTCAAATTCAGAAGAACAGC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04130.16	GCP_C_terminal	661	977	2.50E-72
PF17681.4	GCP_N_terminal	40	397	2.60E-24

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT2

Gene Ontology

GO term	Description	Category
GO:0051225	spindle assembly	Biological Process
GO:0051321	meiotic cell cycle	Biological Process
GO:0000278	mitotic cell cycle	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR042241	Gamma-tubulin complex component, C-terminal domain superfamily
IPR007259	Gamma-tubulin complex component protein
IPR040457	Gamma tubulin complex component, C-terminal
IPR041470	Gamma tubulin complex component protein, N-terminal

trEMBL

trEMBL term	Description
A0AAN9MF47	_

SwissProt

SwissProt term	Description
GCP5_MOUSE	Gamma-tubulin complex component 5

KEGG

KO	Description	Enzyme
K16572	gamma-tubulin complex component 5

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G80260	Spc97 / Spc98 family of spindle pole body (SBP) component
Medicago sativa L.	MsG0380017114.01.T01	_
Oryza sativa L.	LOC_Os02g32340.1	Spc97 / Spc98 family protein, putative, expressed
Cucumis sativus L.	Csa009452	_
Glycyrrhiza uralensis Fisch.	Glyur000236s00014243.4	_
Codonopsis lanceolata	Cl_chr02_21850T	_
Arachis hypogaea L.	AH06G25010.2	Gamma-tubulin complex component 5 like

Expression pattern