Gene detail

Detail information of Am03G008190.1 Annotation

Gene ID	Annotation
Am03G008190.1	myb domain protein r1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G008190.1	mRNA	Chr03	21160549	21162203	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G008190.1
CACCGTGATTTCGGAGAAGCTCCACCTACAAGGCCGGGCTTATAGCTACGAACGTGTCTGCCCCCAGCCTCGGAAGCCTCGAAGTGTCAGGAAATGATGTGACCAACGAGTGACTCGAGGTGTCAGTTTAATGTCGCCTTTAGGGCAGTATTCTTCGATGCCGGGCTTATACCAGCGAGGGTGTCTGCCACCAGCCTCGGAGCGCCCGAGATACGGGTCTTGTTAAAGATTTTCGAGGCCGGGCTTATACCAGCGAGGGTGTCTGCCACCAACCTCAGAGCGCCCGAGATACGGGTATTGTCAATGATCTTCGAGGCCGATCTTATACCAGCGAGGGTGTCTACCACCAGCCTCGAGGCGCCCGAGATACGGATCTTGTCAAAGATCTTCGAGCCCGGGCTTATACCAGCGAGGGTGTCTGCCACCAGCCTCGGAGCGCCCGAGATACGGGTCTTGTCAAAGGTCTTCAAGGCCAGGCTTGTACTAGTGAGGGTGTCTGCCACCAGTCTCGGCAGTGCATAAAACGTGACCACCTGAGGGACTCGAGGTGTCAGGATAGTAGGAATCATCCGGAGTCCGACCTAGTGGAGCTCCCGAACCTCTAGCGATGTCAAGCTCGGTGTCTCGGGTTCCGGTTTTAGCGTGGAACTTTAAGGCGATCGTTCGACTGATCCCAAATCCTTCCCTTCAACCTCAGAATTCATTTTTACTAAGCAATCAATGTGAGGAAATTTGTAGTCGATCCTTATATATAGATGGTTAAACATTTACAAAGTCGGATTACATCACACCCGTAGGCTCATTCCGAGACCTAGGTGAAACGTGACCTTCCTGCGTTAATCCCTTCTTCATGATCGATATACTTCTAAGATCGCTGGAGGAACTCGGCTAGCGACTCAGCTTGGTTGACCCCGACATCTATCTGAAACAGACTTCCTTCACGAAGACCAGCCTCCATGAAGTAAAGATGGAATGAGTCGTTGAGGTTCCGGACTTGAGCAGCTTCTCTATTAAATCTCTCTATGTAGTCCCGAAGGAACTCATTTTCTCCTTGCCGAATTGTCTGCAATACCTTCCGAGATTTAGGCTTTCGAGTGGGCGAAGTGTGCAGAAAAGAGCTTGGCTAACTGATCCCAATACGAGATCGTATTTGGCTTAAGAGCCCCGAACCAGTCTAGAGCAGCCTTCTCTAGAGTGAGGGGAAAGGTTCGGCACTTTATCTCCTCTGGAACGTTACGGTATTGCATAACCGTGTCAAAGTAGTCGAGGTGGCGGTCCGGATCGCCAGTCCCGTCATGCATTTTCCGACCTTCAGGGGGTTTCTCGAGGTGGTTCGGCACCGGAAAGTAGTCGATCTTACTTGTGAAGGGTCATTTGCGCTTTGTCGACCTCTCCAGGAGTGGAGACCGTCGGTAGCCATATTTTTTGGGGGATCCGCTCGAGCGAAGACGCTGAAATTCCTGCCTCGGAGACCTTTTCCGACTTCTGGTATGTCGCCTCGGAGGAGAGGGAAACAGAAACGAGCTAGGCCGAGGGGAACCCTCAGGACTATAAGAATCATCAGTTGTCCAACTTGGGGGAGTCTCCGATCCTCGCCTTCCTCTACAACGAGGTGGAGTGCGGTGATGGTATCTCCTCCAAGCCGGAGATCGATGGCGGCCGCGGCCATCAGTCATTCCACTTGAAGAGTTGCGCAAAGAGGAACTCAAATCCGGGATGTTACGAGCCCGGATCTCAGCAATCTGAGCTTCTAACTGGGTGTAGCGTTGACTTTCCTGCCGGTCGACATCGGCTTTCCAATTTAGGAACAGGACGAGTTGTTGAACAGCATCGACCGGTACCTGGACGGTCGGAGGGGGAGGTGGAAGTCGGTTCCGGGCTGAGCTCCCAGGAACCATAGCCGTAGCCGAGCTTTCAGCATGCGCCGGGCTAAGGGGTGAGGTGACTGCCACTCCTTCCGGAGTCACCCACTGCAGAATCGGTCCTTCAGCGACATTCGGGATAGTCCTATGACGTAAGGCTATCCCGAATGTCGGAGCCATTGTCAAGCAAGGAGATGGGAGAGGAACTAAAGTACAAGATCCTCCCACTGTGCTCGCCAATGTTCTGTACCGTATCTCTGGACCTGTATCCGATCCTAAACACAAGGTCCGATCCGAGATAGTTGGTAGGGGTTGGTCTTGATCAACCGAGCTCCGCTTTCGATCCGGGGCATGTGGTACCTGTGAGGACACTCCGACGCTCAAGTCAGCTAGGAAACTGATTAGAGATAAAGAGTAGGAAGAGTGTGTACCTTGAGCATTACAGTGAATGCCTATTTATAAAGTAAAAGTGTGTTGTCCTAATGAATCAGAGTCGTCTGATGTAGGGCCTAGATCTTAGCCGTTGGTTAATAAATCTGCTTTTGCTTTTGGGTCTCACTATCGTGGATTGGGCCATCCGTAACAAACTTAAACTCTTTTAAAAAGACGGTTATATATCTTTTAAAAATACAATAAAATACTGATGTAAAATGAAGAGAAGATGTGAAGAAGTTTCAAAGAGGAGTAAATGGTCAAAAGAGAAAGAAAGAAGACAAACCTGGATCAGTGTGTGCCAGCCAGCCAGAAAGCAAGCCTTGTTACTTACTCTCTTACACTGTAATCAAACAAATCAAATGGTATCTGCAGAGTCATTGTTGTTAGACCTTTCACAGTTCACACCCACCACCAACTATACAAAAGCCCAGTTTCCTGGAAAGTACCCTTCCTCTCACTCACAGCTGCACCTTTTTTTCTTTCTTGTCTTAAGTCTCAACATCCCTCCCTCTCATTACACAGCCACACCCCATAGAATTAAATAATTCTACCTTGCATGCACCTTATTATAATATTAATCATCTAACTAATCACTCTTCTCTTCTCATTTCTCTCCATATATAAATAACTAAACCCAAACAACACTACACTCCCTTCGTCTATTACTTATCACTCAAAAACCATTTCTCTCTAAAATTTGAAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	34	80	3.70E-34
PF00249.34	Myb_DNA-binding	88	130	3.70E-34
PF13921.9	Myb_DNA-bind_6	37	95	1.00E-26
PF13921.9	Myb_DNA-bind_6	89	133	1.00E-26

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A8B8LM01	_

SwissProt

SwissProt term	Description
MYB44_ARATH	Transcription factor MYB44

KEGG

KO	Description	Enzyme
K09422	transcription factor MYB, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G67300	myb domain protein r1
Medicago sativa L.	MsG0380017116.01.T01	_
Oryza sativa L.	LOC_Os09g01960.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa003581	_
Glycyrrhiza uralensis Fisch.	Glyur000236s00014246.1	_
Codonopsis lanceolata	Cl_C02027_unscaffolded_00010T	_
Arachis hypogaea L.	AH17G26480.1	Transcription factor MYB44 like

Expression pattern