Gene detail

Detail information of Am03G006300.1 Annotation

Gene ID	Annotation
Am03G006300.1	CONSTANS-like 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G006300.1	mRNA	Chr03	16299351	16301751	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G006300.1
AAATAGATTAAAAAAATCACACAGAAAATATATGGATGAAAGGAAGAGGACAACCGACACACTTATGTATGAGTGACTAGTCATAAAAAGTAAGGTGGACAAGTAACTGAGACCACCCGAAATCGTATAATCCGAATAGTCAGTGGCGGAAATAGATGACTTTTTATAGACTAAGATATTCATACTAGTACGTAGTTTCTCAATAAAACATAAACATATCATTAGTTAATATATGATCATCACATTGTCGGAATAAATACTTGTGATCATATCAAATAGGGATAGTTACATATATTTATCTCACCCATATCACAATATATTATTTTTTCTATTATTGTGTTACGAAAAAGCGGATAATTTTGTCTTTTAGTTATTGAGGTATTAAAGTGTATCATATATGAGTGACAATCATGTGCTTAGTTGGTAAGAGGTATCAGAAATGCATCTGAGAAGTATCCTTAGTTGGTAAGAAGTATCAAATATGTATCTGAAAAGTATGAGTCAAATATTTTTTTTAAAAAGAATTAAAAAATTATTGGATACTTTTTGGGTACGTATCGAGTGCGTGTCGGTATCGGATACGCATCCGACACGGTTACGTCTCCATTTTTGAATTATCGAGACTTCATAACTTATCATTCATGGAAAATAATTATACGAATGACAATGCAATTAATTTAATAACATATAATATTTCATCCTTAACTCAATACAATATTCGTTTATAAAAAGTAAATATATTTATAAAGGTAAAATACAAAATAACTATACTAACAACATGCAATTTTTTTAGTGGAGATTCAAGACTAAAATATTTATGGATATAAAATATAAAAAAATTATACCAAAAATAGTAATATATCACAATTGGGATTCAAATTAGGATAATCATTTAAAAAATTTAAAAATATCTATTTATTATAGCAAAAACATGTAGGGTATTTGGCTTGCAAAAGGGGTAAATACTAGTCTAGATAGAACAGTACTTAACGAACTTAGGTTTCTTGACAACTTTTTTTAGTTTACACCGTTTGATGCACAATAGAATAGGGTGAAGAAAAATATAAAATTTATTACAATACTCTTTATATTGATTTTATAAAACATATTTTACATAATATCGTTATTTAAGAATATTTAGATCATTATTATCTTCAAAAAAAATATTTACATCATTATTTTATAATTATGTTTTTTCTTTCTCACTTTTTCCTTTCATTTCCACACAATTCCTCTTAGACCGAAATATTAAATAATTATTTCATTTTTTATTGTCTTTTTTTTCTTTTTCCTTTAGAGCATCAGCAGTAGTAGTTCCTAAAGTGATTTTTACCAATGAAAGAGAATATTACCATTAGGGAGAAAAATATTTATTTAATAGGCTAAATATATATTTTGGCCCTTTATCTTTGGGGTTGTGGTCACTTTGGCCCTTTATCTTTTTTTTTCTCATTTTAGACCCTCATGTTTTTTGTGTGTGTCATTTTGGCCCCTGCCGTTATGTTTATGTTTTTTTAGGCAAATTTTTAAGGACGAAAATGAAATCAATTAAAAACATAAGGGCCCAAAATGAAATCAATTAAAAACATAAGGGACTAAAATGAAATCAATTAAAAACATAAGGGACCAAAATGATAACGGCAGGGGCCAAAATGACACACACAAAAAACATGAGGGTCTAAAATGAAAAAAAAAAGATAAAAGGCCAAAGTGACCACAACCCCAAAGATAAAGGGCCAAAATATATATTTAGCCTATTTAATAAGTGGGAGTCCTCTATGTAACTGCTTTCTTTTTCTTACTTTACATGGATCCTATTTGAAAATGATGTAAGCTATTTGTTAACATGCTGTCTTTATTTGACGTGATGATGTCTAGTTATTTGTTCGATCGATTTAGTAATTTTTTAGAGTTTTGTGTTGGAGAAATTGAGAGCTTGAAAAGCAATAATAAAAAATTATAAATGAGTAATGTGTACAAATAGGCCCATTTAGGCTCCGTTCGGCAAAGCCAAACCGCTGGCTTATAGCGGATAACCTAGTTGTAGATGTTTAACATGACTAATTTATAACGTTTTTTCACTGGCTTATAGAGTTTAGTAGTTGTTGAGCTTATAGCTTATAACATTTCATTTTTTCTCCCATTGAGGCCCGTATTGGTTTAATTAAATTTCTTATTTATCCACCATTAAATGAATCATTTCTCTCATATTTTCAAGCATTAATTACAAATATTCATTTATGTCATCCACTTTAAATTCAATCTTCTCTTTCATTTTCAACCGACAACCTCTAATTTTATCAAACACTTTAAATTCAATCCAGTGGCTTTTCTGCTATCGACTCATCTACTATAAGCTAGTTTATCCATTACCACCACCGCTTTATTTCCTATCACCTCTTTTTTGGCAAACAAAATGTTAAACGCCAAAATGAAAGATGTTCTTATATTTTTACTATTCTCTTCCGCTCTCTCTCCTATAAACAACGAGACCATGAAAGTTGATAAAGTGTGCTGGGCCTAGACAATGAAGTGGGGTCCAGTTTGAAAAGGACATTGCTTTAACAGGGATGCGGTGGGTCCAAAAAGTGCTCCATCCTTCCTTCCATCCCCCTTCCGTCTCCCTCACGTCAAGCCTTAAACAACGCCACTTGATTCACTGCAGTCACTGCTCCATGCAGTCACTGCAGTTATCTAAATAGTGAATCATTGGATGTACTTAAATCACTATCCTGGCCCTTCAGTTATTTTATGATAAAAAATAAAATAAAAATCAAAGAGGTGAGAGATAGAAAGAAGCAACGGCAGGGGATCAGCATCCCACATTGGGACACCCCCTTGAACATTGAATCTGGCTAAGCCTGTTACACGTGGCAACCTCCCATTGGAAATGATGCAGATTTCCCTGGCCCACACGATAGCCTTGTGAACTGGAACAACTTGACTCGTTTCACATAAGACGTTTCCTAACCACTTCAATCCTAATCAACTCCCATTCCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06203.17	CCT	232	274	1.30E-17
PF00643.27	zf-B_box	4	47	5.50E-12
PF00643.27	zf-B_box	46	90	5.50E-12

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	CONS5

Gene Ontology

GO term	Description	Category
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0000976	transcription cis-regulatory region binding	Molecular Function
GO:0010161	red light signaling pathway	Biological Process
GO:0010099	regulation of photomorphogenesis	Biological Process

InterPro

InterPro term	Description
IPR045281	Zinc finger protein CONSTANS-like
IPR010402	CCT domain
IPR000315	B-box-type zinc finger

trEMBL

trEMBL term	Description
A0A2K3LG98	_

SwissProt

SwissProt term	Description
COL4_ARATH	Zinc finger protein CONSTANS-LIKE 4

KEGG

KO	Description	Enzyme
K03539	ribonuclease P/MRP protein subunit RPP1	[EC: 3.1.26.5]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G24930	CONSTANS-like 4
Medicago sativa L.	MsG0380017344.01.T01	_
Oryza sativa L.	LOC_Os04g42020.1	CCT/B-box zinc finger protein, putative, expressed
Cucumis sativus L.	Csa006067	_
Glycyrrhiza uralensis Fisch.	Glyur000162s00009936.1	_
Codonopsis lanceolata	Cl_chr02_34160T	_
Arachis hypogaea L.	AH20G26380.1	Zinc finger protein CONSTANS-LIKE 4 like

Expression pattern