Gene detail

Detail information of Am03G006140.1 Annotation

Gene ID	Annotation
Am03G006140.1	nuclear RNA polymerase D2A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G006140.1	mRNA	Chr03	16021595	16030437	+

Sequences

CDS:

>Am03G006140.1
ATGGGCCACGTTGGTTCCAGCAAAGATGGCAGCAAAGCTGCGATGGCGATTGACGACGACGACATGATGGCGACGAACAACGACGACATGGACATTGACCTTGACGAGTATTCCAATGCGGAGATCCTCAAAGAGGTGGGAGATGCTCAGGTGGTAAAGTACTGTGAGAACTTCTCGAAGCTGTTCTTCGAACAGTACGGTCTCATCAGTCACCAAATCAATTCCTATAATCAATTCATCAGCACTGGTATTCAGAGCATTTTCGATTCCTTCGGTGACCTAGTCGTTACGCCAGGTTTTGATCCTTCAAAGAAAGGAGACAGCGATAATTACCGTTATGCTTCCGTGAAGTTTCGCACCGTAACCCTTGATCGCCCTAAGTTTTGGTGCGGAGAAGGTAGTACTCAAGAGTTTAAGATGCTTCCTAGGCACGCTCGTCTTCAGAGGATGACTTATGCTTCTAAAATGAAAGTCAATGTTCACGTTCAGGTATATGTTCCGAAGAAGGTTCAGAGTGATAAATTTAAGACGGGAAAAGATGAATACGTTGAAAACGATATTAAATTGGACGATGTCAGAGAAATAACCATTGGGAGGTTGCCTGTTATGGTCAAGTCTGATCTGTGCTGGATGAGTGGAGATGAAAAGGATGATTGTGAATTTGATCATGGAGGCTACTTTCTGATAAAGGGTGCGGAGAAGATCTTTATTGCACAGGAACAAATTCATTTAAAAAGGCTATGGGTTTTGAATAGTCCGTACTGGTCAGTTGCCTACAAATCACAGATGAAGAGGAATAGGATGCTTATTAAGTTGGTGGGGAATTCCAGAATTGAAGGAATTAGCAATAGCGAGAAATCCCTTGCAGTGTATTTTTTGTCGGTTGAGATTCCTTTATGGATACTATTTTTTGGTTTAGGTGTCTCTTCTGACAAAGAGATTGTAGATCTTATTGACTATGGAAGTGGAGATGCGAGAATTCAAAATATTATCTTTGCATCCATCCGCGATGCCGATGAGAAATGTGATGGATTTCGTAGAGGGAAGAATGCACTTCATTACATAGAGGAGCATGTAAAAGGTGTCCAATTCCCACCTCCAGAGCCAATTGAGGAGTGCCTCAACATGTATGTCTTTCCGAACATTAAAGGTTTGAAGAGAAAGGCACGCTACGTTGCATACATGGTGAAGATTCTCTTCATGGCTTATACTGGGCGTAGAAAATGCGACAATCGGGATGATTTTCGAAATAAGAGACTTGACTTAGCTAGTGAGCTGCTAGAGCGCGAGCTAAGAGTGCACATTGCACATGCTCGAAAGCGAATGGCAAAGGCCTTGCAAAGAGACCTTTATGCAGATAGAGAGGTACGTCCAATTGAGCACTATCTCGATGCTTCCATTATTACAAATGGTCTCCAAAGAGCATTTTCTACTGGTGCATGGACACATCCTTATAAAAGGATGGAAAGGATTTCTGGCGTGGTTACAACACTTGGGCGAACTAATCTGTTACAGACCACGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTCTGTTTCCTCTCTACTCCGGATGGTGAAAATTGTGGACTAGTAAAAAATTTAGCTGTCACGGGACTTGTAAGTACCAACACAACTGAATCTATACTTCCTCAGTTGTTTGGTTGTGGAATGGAAGAACTTGTTGATGATACCACCACCTTTCTGGGGGCAAAAGATAAAATCTTCTTAAATGGGGATTGGGTTGGAGTTTGTCAAGATACCGATTTCTTTGTGGCAGAGCTACGAAAGAAAAGACGTAAAAATGAATTGCCTCATCAGGTGGAAATCAAAAGAGATCAATGTCAACAAGAAGTGCGCATATACTCCGATGCAGGACGGATTCTTCGTCCACTTTTGGTAGTTAGTAATCTACTCAAGTATAAAGGATTGAAATCGGAGCCTACATCTTTCCAGGCTCTATTGGATAACGGCCTTGTTGAGCTGATTGGACCTGAAGAAGAAGAAGACTGCTGCACTGCTTGGGGTGTTCCATATTTATTTGGAGAAGAGGGTAAAAAAAAAGTGAAGTACACACACTGCGAACTTGATATGTCATTCTTGTTGGGTCTAAGCTGTTCACTTGTTCCATTTGCTAACCATGACCATGCAAGAAGGGTGTTGTATCAGTCCCAGAAGCACTCTTCACAAGCAATTGGCTTTTCTACAACAAACCCTGATATAAGAGTTGATGCTTTGTCTCACCAATTATTTTATCCTCAGAAGCCACTTTTCCGGACAAAGATGTCTGAATCTCTTGGAGAATATGTTTCACGTGGCTGTCCTCCTAGAAAGGTATTAATTCCAACAGCTGAATTCTATAATGGGCAGAATGCGATTGTGGCTGTCAACGTACATTTAGGGTACAACCAAGAAGATTCGTTGGTGATGAACCAGGCATCTTTGCAGCGGGGTATGTTCAGATCTGAACACATAAGAAGTTACAAGGCTGAAATTGACAATAACGAATTGTCAGAAAAGAAGAAACGCAAACCAGAAGACATTGTTAATTTTGCAAAGATACAAAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGTGCAAATGTGCAAAGTGGGGACATTATTGTTGGACGGTGTGCTGAGTCCGGAGCAGACCACAGTATAAAGTTAAAACACACTGAAAAGGGTTATGTGCAAAAGGTTGTGCTGTCCTCAAATGATGAGGGAAAGAACTTTGCGGTGGTTTCATTAAGACAGGTTCGAGGTCCAGTTCTTGGTGACAAGTTCTCCAGTATGCATGGACAAAAGGGTGTTTTAGGGTTTCTGGAGTCTCAGGAAAATTTTCCCTTCACTAAACAAGGTATTGTTCCTGATATTGTCATCAATCCGCATGCATTTCCCTCACGACAAACTCCAGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATCGCAAGTTTCCACCCTAAAGATTCCCCGGCAAATGCTACCCCTTTTTCCGCTCTCTCTATTGAAGCCATTACAGACAAGCTTCACAGAGCTGGGTTTCAAAGATGGGGAAATGAGAGGGTATACAATGGGAGAACTGGTGAGATGGTTCATTCCCTCATATTTATGGGCCCAACATTCTACCAGCGACTACACCACATGTCTGAGGACAAAGTAAAATTCCGAAACACTGGTCCGGTTCACCCGCTGACCCGACAGCCTGTTGCTGACAGAAAGCGATTTGGAGGTATCAAGTTTGGTGAGATGGAGCGCGATTGCCTGATAGCTCATGGTGCATCAGCCAACCTGTATGAACGCCTATTTACCCTCAGCGACTCCTCTCAGATACACATATGTAGTAAATGCAAAAATGTTGCAAATGTGATCTTACGGTCTGGGTCTGGGGGCCGAAAAATACGAGGCCCCTATTGCCGATTCTGTGAATCGGCTGATGACATTGTGGTGGCCAATGTCCCATATGGGGCTAAATTATTGAGCCAGGAGTTGTTTAGCATGGGAATTAATCTCAAATTTGAAACAGAACTTTGCTAG

Protein:

>Am03G006140.1
MGHVGSSKDGSKAAMAIDDDDMMATNNDDMDIDLDEYSNAEILKEVGDAQVVKYCENFSKLFFEQYGLISHQINSYNQFISTGIQSIFDSFGDLVVTPGFDPSKKGDSDNYRYASVKFRTVTLDRPKFWCGEGSTQEFKMLPRHARLQRMTYASKMKVNVHVQVYVPKKVQSDKFKTGKDEYVENDIKLDDVREITIGRLPVMVKSDLCWMSGDEKDDCEFDHGGYFLIKGAEKIFIAQEQIHLKRLWVLNSPYWSVAYKSQMKRNRMLIKLVGNSRIEGISNSEKSLAVYFLSVEIPLWILFFGLGVSSDKEIVDLIDYGSGDARIQNIIFASIRDADEKCDGFRRGKNALHYIEEHVKGVQFPPPEPIEECLNMYVFPNIKGLKRKARYVAYMVKILFMAYTGRRKCDNRDDFRNKRLDLASELLERELRVHIAHARKRMAKALQRDLYADREVRPIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVTTLGRTNLLQTTAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNTTESILPQLFGCGMEELVDDTTTFLGAKDKIFLNGDWVGVCQDTDFFVAELRKKRRKNELPHQVEIKRDQCQQEVRIYSDAGRILRPLLVVSNLLKYKGLKSEPTSFQALLDNGLVELIGPEEEEDCCTAWGVPYLFGEEGKKKVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRVDALSHQLFYPQKPLFRTKMSESLGEYVSRGCPPRKVLIPTAEFYNGQNAIVAVNVHLGYNQEDSLVMNQASLQRGMFRSEHIRSYKAEIDNNELSEKKKRKPEDIVNFAKIQSKIGRVDSLDDDGFPYVGANVQSGDIIVGRCAESGADHSIKLKHTEKGYVQKVVLSSNDEGKNFAVVSLRQVRGPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASFHPKDSPANATPFSALSIEAITDKLHRAGFQRWGNERVYNGRTGEMVHSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRSGSGGRKIRGPYCRFCESADDIVVANVPYGAKLLSQELFSMGINLKFETELC*

Promoter(3k):

>AM03G006140.1
AACGCAACAGATCACGATCTTCTTCACCTTATTCCAACAACAACAACAATAAACATAACCAGAAAGCGAAAGAGGGTTTTTTTTGAGAAATGAGAGTAAAAATGGTGTGATAATTATAGAACAGTAAAAGAGTTTTTGAGAAAGAAGAGAGGAAAATGGTGCGATTTCATCATTTCTTCCCCAACGCTGGTGATTTCATCATTGCTTGCAAAGATTCATGGGGTCTTTGTATTTCTGGTTGGGACTTTGAAGGATTTAGGGTTCATGTGTTGAAGAAGCAAATGGAGCAACAATTTGGGGGGGGTTTGAGGGTTTCGGTTACGATGGAGAGAGATGAGAAAATTCAACAACGATTGTGTTTGATGCGATGGCTTAAGAGGGATGGAGAAGAGGGTTGAGCAGATTAGGGAAGATGATGATGAACATTTTAATTTATTTTTTTAATAAAAAATTGTTTTTTAAATAAAATCCAAGTTGGAATTGACACATAAACATAAATAATTGTCATGTAGACACTCTAACAGCCACATATACATTTTTCTAATAGAGTCAAACGGAAATTGCAAAAAATGGTAACGATGCAATGATTTTAAAACATAAGAGACCTATTCGTTACAAAAAAAAAATAAGGGACCTATTTGTTACTGAAAATAAGTTAAGGGACATTGAGAGCTATTTTGCCTAGTTAATCAATACAGTTGACCCAGTGGCATAAGTTACTGTAGGACACAGAGGGTCGACCCAACTCTTTCGAGTTTAGTTTTTGCAGTGGACAAACTCGATTTTGGGAAGTGCGAAATTTGCTCCTAAACACGGCAAAGCCTAATACTTTTTATTTATGTACCAAAGCACCCTCCTTTTGCTTTCAACAAGTTGGAAATCACGCCCCCACCCTCTTTTCTCACAGATATTAAACTTTATTGCTTTTTTTATTTGCTCAACATATTTTTTTTAAAAAAAGTTGTTTTGTTTTAAATTATTTCTTGTTAAATAATTAATGTTTTGTATTAGATAATAAACCCAAAATTTATCACATGCCAAGAATGTTTTAACCTCTGCACCAACTAAAATTATCTTGATATATTCGCAAAAAGAAATGCATATATTAAAAATTATATGCAAACAATATATTATTAAAAGAATTTCAAACATATATTTTGAGACGTGAACGCTTGTGATGATGTCATTGCTAAATATGGTGCGTAGTCCTCAATGCACTACAAAACTTATAATTCTCCCCCTGTTGAAATGGGATATCTGCACTGTATTGCTTCTGAAAGATTCAACGGAAGTCCTTGCTTAGTCGCTCATGCTTTCACCTTTTTTTTTTCTATTGCATTTCACCAAGAAAAAGATGAGAAAAGATGTAAAAAAAAGTGAATTTTAAGCCATAAACAAATACACATTAATTAGTTTTTTTTTTAAAAATAAAACAACCTAAAATAAAATACATAATAGCTTATAGTGTATATAAACTTTTTCTTATATAATATAATCTCAAACAAAAACTCTAAATTCAAAAGTTAAATCAATCCAAAATAAAAATGAAGCTAAAATATACATTTTGTCCCTTATCTTCTTTTAGAGTGTGTTTGGGAGAGGATTTGGGAGGGTTTGGAAAGGGAGGATTTTGGAGGACTTGGTTTATATTTTAATATCTATTTGAGATTTTGAAAAATTGAAAGAATAACATAATAGATAATGATAAAATATTGTAAATCACACTTCATTTTTATTTAGAAACATTTACAGCTTCCTCAATTTAGAATTGAAAATCAAGTTCAATCCTCATTTTCAGTTTGGCTCTTTTACTTTTCATTTCAAAATGCCCCCCGGTTTCTAAGTTATAGCAATATGGTGGCTCAATATATATATATTTTTTTAAAATAATCCTTTAATTTGTAATTTTTTCCATAATAGTCTCCTTTTTCTATGTTAATATGATAGCTTATTTTGCTAAAATTATGTTGGCATGGTCATTTCCATAGAACGATTTAAACGAAATGACTATATTCTTATGTTGGCTACTCGTTATTATTGTGCAATATTTATTGTTTGCCGGTACCTAATATACGTCAGAGAATTTGATTGACCACATATACTCGATTTTGCGGGGCGTCGTGGTTCTCCCTTCCTAATAGAGTATATTTAAACGAAATGTTGTTATCCCTTCCTAATAGAGTATATTGAAACGAAACCAACACTGTTGGCCTAGTGACTTAATCTACCCTAGAACACAGGGGGTCAACCCGATGCTCCCGGGTTCGATTCTCGCAGTGGACAAACTCGGTGTTGGCTAGTGCGAAATTTGATCCTAAGCACGAGTGGAGATTAGTGTTTCGTTGAAAGCGTTGAGACGCTTCGAGGGTAGTCAGCGATGGTTTAGACAAAAAAAAGAGTATATTGAAACGGAATGACTATGTTTTTTGGTTACCGCGTTATTGAGTGAGATTCAAATCGAGTTACCACTCGGATCAACTATTGTCGGTAACGAGATGCCTATATTAGTATTACTTTACAAAATAAAAGAAACGCCAAATTTAGAAACTAAAAAAGAAATAAATGACACAAGTATAGTTTAGCATAAAAAACTGCAATATATTGTATTTATTTAGAAAGTCAGAAAGTAAAATAAATAAAAATGAATAGTATTAGTATGTCCCAACGCGAGGGAGGGCACATGCGTCTTTCCGCTCCCTTTCTTTGCGCATCCGTCAGGACTCGTCAGGACTCGAGAAGCTGAGTACGGATGCTTTACCACATATGCCCCTGTAGTCTTGTCCGCATTTTTTTAGTAATTTTGTAATAGTAATAATTAATAAAGCGAGTCTCAACTCTCAATAAAACTCATTCATTCTCACGCCAAGTTTCCCGTTCACGGTCACAGTCCACAGTACACACTACAGAGTGAGAGCAAACGAAATCGTGAGATAGTACTAGTTGAAAACCCTTGTCCTAAAACCCTAGATTTTCATCGCACCAAAACCATTGTTGATAATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00562.31	RNA_pol_Rpb2_6	725	1102	8.40E-100
PF04560.23	RNA_pol_Rpb2_7	1104	1202	3.80E-30
PF04563.18	RNA_pol_Rpb2_1	67	458	6.30E-29
PF04566.16	RNA_pol_Rpb2_4	594	654	3.50E-21
PF04565.19	RNA_pol_Rpb2_3	498	557	5.70E-16
PF04561.17	RNA_pol_Rpb2_2	294	421	8.10E-13

Gene family

Gene family	Subfamily
Epigenetic Regulators	NRPDB1

Gene Ontology

GO term	Description	Category
GO:0009073	aromatic amino acid family biosynthetic process	Biological Process
GO:0008652	amino acid biosynthetic process	Biological Process
GO:0004106	chorismate mutase activity	Molecular Function
GO:0098869	cellular oxidant detoxification	Biological Process
GO:0004601	peroxidase activity	Molecular Function

InterPro

InterPro term	Description
IPR007644	RNA polymerase, beta subunit, protrusion
IPR007121	RNA polymerase, beta subunit, conserved site
IPR014724	RNA polymerase Rpb2, OB-fold
IPR007641	RNA polymerase Rpb2, domain 7
IPR007647	RNA polymerase Rpb2, domain 5
IPR007646	RNA polymerase Rpb2, domain 4
IPR007645	RNA polymerase Rpb2, domain 3
IPR037034	RNA polymerase Rpb2, domain 2 superfamily
IPR007642	RNA polymerase Rpb2, domain 2
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712	DNA-directed RNA polymerase, subunit 2

trEMBL

trEMBL term	Description
A0A1S2YAD1	_

SwissProt

SwissProt term	Description
NRPD2_ARATH	DNA-directed RNA polymerases IV and V subunit 2

KEGG

KO	Description	Enzyme
K16252	DNA-directed RNA polymerase IV and V subunit 2	[EC: 2.7.7.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G23780	nuclear RNA polymerase D2A
Medicago sativa L.	MsG0380017365.01.T01	_
Oryza sativa L.	LOC_Os04g54840.1	DNA-directed RNA polymerase subunit, putative, expressed
Cucumis sativus L.	Csa014852	_
Glycyrrhiza uralensis Fisch.	Glyur000162s00009914.1	_
Codonopsis lanceolata	Cl_chr07_28990T	_
Arachis hypogaea L.	AH10G19750.1	DNA-directed RNA polymerases IV and V subunit 2 like

Expression pattern