| Gene ID | Annotation |
|---|---|
| Am03G006020.1 | chromatin remodeling factor CHD3 (PICKLE) |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am03G006020.1 | mRNA | Chr03 | 15658624 | 15679841 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00176.26 | SNF2-rel_dom | 305 | 584 | 9.90E-69 |
| PF06461.14 | CHDII_SANT-like | 932 | 1065 | 9.00E-59 |
| PF00385.27 | Chromo | 101 | 157 | 2.30E-23 |
| PF00385.27 | Chromo | 192 | 240 | 2.30E-23 |
| PF06465.16 | DUF1087 | 843 | 901 | 4.00E-22 |
| PF00271.34 | Helicase_C | 608 | 721 | 7.10E-18 |
| PF04851.18 | ResIII | 285 | 465 | 1.40E-10 |
| PF00628.32 | PHD | 53 | 95 | 2.00E-08 |
| PF11496.11 | HDA2-3 | 591 | 753 | 2.10E-07 |
| PF08074.14 | CHDCT2 | 1078 | 1111 | 2.30E-07 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | Others |
| Ubiquitin Family | PHD |
| Transcription Factors Family | SNF2 |
| GO term | Description | Category |
|---|---|---|
| GO:0003677 | DNA binding | Molecular Function |
| GO:0005524 | ATP binding | Molecular Function |
| GO:0005506 | iron ion binding | Molecular Function |
| GO:0016887 | ATP hydrolysis activity | Molecular Function |
| GO:0008168 | methyltransferase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR019786 | Zinc finger, PHD-type, conserved site |
| IPR001965 | Zinc finger, PHD-type |
| IPR019787 | Zinc finger, PHD-finger |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR000330 | SNF2, N-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR009463 | Domain of unknown function DUF1087 |
| IPR016197 | Chromo-like domain superfamily |
| IPR000953 | Chromo/chromo shadow domain |
| IPR023780 | Chromo domain |
| IPR012957 | CHD, C-terminal 2 |
| IPR009462 | CHD subfamily II, SANT-like domain |
| trEMBL term | Description |
|---|---|
| A0A8B8LL00 | _ |
| SwissProt term | Description |
|---|---|
| PKL_ARATH | CHD3-type chromatin-remodeling factor PICKLE |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G25170 | chromatin remodeling factor CHD3 (PICKLE) |
| Medicago sativa L. | MsG0180000562.01.T01 | _ |
| Oryza sativa L. | ChrUn.fgenesh.mRNA.85 | expressed protein |
| Cucumis sativus L. | Csa014880 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000162s00009898.1 | _ |
| Codonopsis lanceolata | Cl_chr01_02300T | _ |
| Arachis hypogaea L. | AH20G25750.1 | CHD3-type chromatin-remodeling factor PICKLE like |