Gene detail

Detail information of Am03G005530.1 Annotation

Gene ID	Annotation
Am03G005530.1	RNA-dependent RNA polymerase 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G005530.1	mRNA	Chr03	14305187	14310958	+

Sequences

CDS:

>Am03G005530.1
ATGGATCTAGAAGGAAGTGAAAAGGACTCGGTGGTTACTCAAGTCAGCATTGGTGGATTTGACAGTGAAGTTAAAGCTAGAGATCTTGTGACATTCTTGGAAAACAAAATTGGATCTGTAGACAGGTGTCGGCTGAAAACTTCTTGTACTCCTCCAGAGTCATATCCAGAATTTAATATCATTGATACTACACAGATCGAAAAAACAGATGAATATAAGAAGGTGGCACCTCATGCTTTTGTGCATTTTACATTGCTGGATTCTGCAATTGAGGCCCACAATGCTTCAGGTCGTTGTGATCTCTTTTGGAACGATAAGCCATTAACGGTCTTCTGTGGGCCTCGAAATCCATTCTTCCTGAACCAAAGGAGGAGAACTGCAACTCCTTTTAAGATGTCTGATGTAGTTGTTGAAATTGGGACTTGGGCTAGCCCAGGGGAGTTTCATGTTGATTGGAGAGGGCCTGATAAAGGGGTAAATTTTCTGGTGGATCCTTTTGATAGCATGTGCAAGCTTTGTTTCAATCGTGATACCGCCTTCTCATTCAAAGGAATAGCAAAAAAAGCAGTGATAAAGTGTGATTTTAAGGTGGGTTTCTTGGTTAGAGACATACGTGAGATCAGAAAATATGCCGATACATCATATCACGTTATTTTATTACGACTCGCTTCATCACCCTCGGTTTGGTACAGAACTGCTGATGATGACATTGAAGAATCAGTCACAATTGATTTACTGGATGATGATGATCCTTGGATTAGAACCACTGACTTTACACCAAATGGAGCTCTGGGTCGATGCATTTATTATAGAATTTTGATCCCACCTCGTTATGGTGCGAAATTGACGAAGGCAATGGATTATCTGAAAAGTCAAAGAGTGCAAGTGGTTCCACTTAAACGGCAACTTAGGATACTTGATGAAGCTGATTTTGGGGTGCCCATGTTAGATGCTTTCTTCTATATTAATTTTCAAAAGGGCATTACTTTTGATATAATGTTCTTGGTTAATGCAATAGTACACAATGGGATATTTAATCGGCATAGTTTATCAGACAAGTTTTTTGACTTGCTGAGAAATCAATCAAAGGAGGTCAATGTGGCTTCCCTGAAGCACTTGTGTTCTTACAAGAACCCGGTGTTTGATGCAACTAATCGACTGAAAATGGTGCAAGAGTGGTTGATCAAAAACCCGAAGTTTTATGAAAGCTCGAAGCATTTTGAGGATATTGTTGAAGTTAGAAGGTTGGTTATCACCCCAACAAAAGCTTACTGCGTTCCACCAGAAGTGGAACTGTCCAATAGGGTTCTCAGAAAATTTAGAGAAGTATCAGACCGATTCTTGAGAGTGACCTTTATGGATGAAGGCATGCAGACGCTTAATGTCAATGCTCTCAACTATTATGTTGCTCCCATTGTGAAGGAAATCACATCAAACTCATTTCCACAGAAGACAAGAATATATAAAAGGGTGAAGACAATCCTGGAAGAAGGGTTTCACTTATGTGGAAGAAAATATTCATTTTTGGCTTTTTCATCCAATCAACTTAGAGATCGTTCAGCTTGGTTTTTTGCTGAAGACAGCGACATTACTTGTAATGATATCAGAAATTGGATGGGCAGGTTTAATCAGAAAAATGTTGCAAAATGCGCTGCCAGAATGGGACAGTGCTTTTCATCTACATATGCAACAGTGGAAGTTGCTGCCAATGAAGTTAACTCCATGCTTCCCGACGTTGAGAGGAACAAGTATGTTTTCTCTGATGGCATTGGTATTATCACCACCGATCTTGCAGCTGAAGTTGCAGAGAAATTGAAGTTGGACACAGTACCCTCTGCTTACCAGATCAGATATGCTGGTTTTAAAGGGGTTGTAGCCTCTTGGCCTCCTAAAGGGGATGGATACAGACTTTCTTTAAGGCCTAGCATGAACAAGTTTCAATCAGATCATACTACCTTGGAGATCTGTACTTGGACCAGATTTCAACCCGGTTTTCTTAATAGGCAGATTATAACATTGCTTTCAGCACTGGAGGTGTCAGATGAAGTGTTCTGGAAAATGCAGGAGGCAATGATTTCCAGGTTAAATCAATTGCTTGTAGATGCAAATGTGGCGTATGATGTGCTGACCAAGTCTTGTGCCGATCATGGAAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCTCAAACAGAACCTCATCTTAGAGGTATGTTAACTTCTATACGTGCTGCACAGCTTTGCGGTCTTAGAGAAAAGTCTAGAATTTTTGTCTCATCTGGACGGTGGTTGATGGGTGTCTTTGACGAGTCTGGTGTGCTTGAACAAGGGCAATGCTTTGTTCAAGTGTCTACTCCATCTCTGGAAAATTGTTTTTCAAAGCACGGCTCGAGATTTTCCGAGACAAAGAATCTGCAAGTGGTTGAAGGCCTTGTGGTCATAGCCAAAAATCCATGTCTTCACCCTGGAGATGTCAGAATTTTAGAGGCAGTTGATGTCCCTGAATTACACCATTTATATGATTGTCTTGTTTTCCCTCAAAAGGGTGATAGACCCCATGCAAATGAAGCTTCTGGAAGTGACCTTGATGGGGATCTATATTTTGTCACATGGGATGGAAATCTTATCCCACCTAGTAAGAGGAGCTGGATACCTATGGAGTACGCGCCTGCTGAAAACAAACTTCAAACTCGGCAGGTCACTACCCGGGACATCATAGAGTTTTTTGCCAAAAACATGGTGAATGAGAGCCTGGGTGCAATCTGCAATGCACATGTGGTGCATGCTGATTCCAGTGACTATGGTGCATTGGATGAGAAATGCATACACTTGGCTGAGTTAGCAGCCACTGCAGTTGATTTCCCAAAAACCGGCAAGCTTGTCACTATGCCCTCTCATCTGAAACCAAAGTTATATCCGGATTTTATGGGGAAAGAGCACCATCAATCCTATAAATCCAAGAAGATCCTGGGAAGACTTTACCGACGGATTAAAGATGCATACGATCAGGATATCGACGCCCCAGATTTGAACTATGCATCTGATATACCGTACGATAAAGATCTCGAGGTTCCAGGATCTTCTAATTTTATTGCTGAGGCATGGGGACAGAAATGCTCTTATGATGGCCAGCTGAGTGGCTTACTTGGTCAGTATAAAGTTAGAAGAGAAGAAGAAGTGGTCACCGGACAGATCTGGTCCATGCCAAAGTACAATAGCAGGAAGCAAGGGGATCTCAAGGAGAGGTTGAAGCACTCATACAGTTCTCTGAAAAAAGAATTTAGGCAAATTTTTGAAAACTTGAATTCTGATGTTGGGGAATTAAGCAGTGAAGAAAAAAATTTGTTGTATGAGCAGAAAGCTTCAGCTTGGTATCAGGTGACATATCATCCTAAATGGGTGAGAAGATGCCGTGACTTGCAATTAAAATCAGCAGATAATCAAGAGTCAGATAGTTCAGAGAGTATGTTGATGCTGAGTTTTCCTTGGATTGCAGTTGATTACCTAGCTCGCACAAAGGTAAAGCGCCAGGGAAATTTTGATTCAACCAAGCAAGTTGGTTCTCTTGCAAAGTATCTGTCTGAAAGGTTATAG

Protein:

>Am03G005530.1
MDLEGSEKDSVVTQVSIGGFDSEVKARDLVTFLENKIGSVDRCRLKTSCTPPESYPEFNIIDTTQIEKTDEYKKVAPHAFVHFTLLDSAIEAHNASGRCDLFWNDKPLTVFCGPRNPFFLNQRRRTATPFKMSDVVVEIGTWASPGEFHVDWRGPDKGVNFLVDPFDSMCKLCFNRDTAFSFKGIAKKAVIKCDFKVGFLVRDIREIRKYADTSYHVILLRLASSPSVWYRTADDDIEESVTIDLLDDDDPWIRTTDFTPNGALGRCIYYRILIPPRYGAKLTKAMDYLKSQRVQVVPLKRQLRILDEADFGVPMLDAFFYINFQKGITFDIMFLVNAIVHNGIFNRHSLSDKFFDLLRNQSKEVNVASLKHLCSYKNPVFDATNRLKMVQEWLIKNPKFYESSKHFEDIVEVRRLVITPTKAYCVPPEVELSNRVLRKFREVSDRFLRVTFMDEGMQTLNVNALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDSDITCNDIRNWMGRFNQKNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNKYVFSDGIGIITTDLAAEVAEKLKLDTVPSAYQIRYAGFKGVVASWPPKGDGYRLSLRPSMNKFQSDHTTLEICTWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEAMISRLNQLLVDANVAYDVLTKSCADHGNAAAIMLSCGFSPQTEPHLRGMLTSIRAAQLCGLREKSRIFVSSGRWLMGVFDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLQVVEGLVVIAKNPCLHPGDVRILEAVDVPELHHLYDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDGNLIPPSKRSWIPMEYAPAENKLQTRQVTTRDIIEFFAKNMVNESLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDQDIDAPDLNYASDIPYDKDLEVPGSSNFIAEAWGQKCSYDGQLSGLLGQYKVRREEEVVTGQIWSMPKYNSRKQGDLKERLKHSYSSLKKEFRQIFENLNSDVGELSSEEKNLLYEQKASAWYQVTYHPKWVRRCRDLQLKSADNQESDSSESMLMLSFPWIAVDYLARTKVKRQGNFDSTKQVGSLAKYLSERL*

Promoter(3k):

>AM03G005530.1
TGTCAATTGACGCTCTCGTTGCTGATCCCGTTAGCGCTTCCGTTGACACTCTTGTTGTCGCTCCGTGCGGCTCACAAAAAAACAAAATGAGATTTAATTATTGATTTTTTAGAAAAAATAATTTGGGAATTTTTGCTAGCGGTATCGCTTTTTTTGACAATTGGTAGTGGTTAAATGAATTTTTTTGATCAATAATGGTTAAATGAATTGGTTTTAGTAGTTTGAGGAGATTTTAGTAAATAGTAAATTCTACATAATTTAATAGTAATTTTATGTAATTACTGATTTTTTACAAAAAATAAGTTAAAAAAGAAGACTTTTTTTTTGAAAAGAAAAATCTGACTACGCGCATCAGCGCGGCAAGCAGCAGACAACTTTTGCTGCCTTTTTCGCAGCTGTTGTCGTTTTTTTTCTCAGCTTTTGTGCAGTTTTTTGGTCTGCTTTTCTGCCAAAAGCTGCGGTTTTTTGGTTTTTTAGTGACAAAATGTCTAAAATGCCCAAAAAATGGGCACGTGCGCAAGTGGAATGTCTAAAAATGTCAATTTACTAGCATTTTGTTTTATTATATTACTATTAGATTAGATTAGATATTAGATATTATATAGATTACATTTTTATCATTGGTTTTGGACACTATTTTGACATTTTGCTAGCATGTGAATTGATTATTCTATAGTATTAGATCGATTAGTATTAGAGATTAGGTTAAATTAGTATTAGATAGATATGTTTGAAGTGGAATAAAATAGAAGTAAATGAGAATAAATAGAGATAAGAGAAGAAAAAGAGAAAGAAATGAGAGAGGAAAGAGGGGATATTAGGAGAGAGAGAAGAGAATAAAATAAATAAAAAAGGAGAGATGAGAGAGATAATAGGAAGATGTGTAAGAGAAAAAGTAAAAAATTGTAAAAAGTAGAGGTTTTTTGTCTTTTAGTGACAAAATATCCAAAATACCCAAAATACCCAAAAAACTGGATACATAGCGCGATAGTGGAATTTCTAAAAATATCAATTTGCTACCATTTTGTTTTATTAGATTATTATATATTATTATATATATATATATTAAATTATATATTAGATTAGATAGAGTATTAGATATTAGATTAGATTATATTAGATTTGCTAGTATAATTTTAATATAATTTTATTAGATCAGTATTAGATCTAGAATACAATTTTATTCTCGAAATTTGAGTTGTGAAAGTGGTCCCAGTGGCCAGTGAGAGAGGGGAAAGGGAACGGAAAGGACGACGAAAAAAAAAGTAAAGATGGAGTGAACTGAACCGAATAGCAACAAACACACTCTCTCACTCACACGACGTTTTCGTGTTGTTTGTTGTAAACTTGTTAGAGAAGGAAACTGATTCCGAAAATTGCATTCTCTCATTATCAACGAGGTAAGCAATCTCTACCTTCTCCTTCCATGGAAGTGGAAAGGGGGTGTCGATTTTCGCACTTGATTCTGTTTTCATTTTCGGTATTTTATGGTTGGTTATCTATTTTGCTGAATCATATTTTCATCAATGGATGCAGGTTAGGTTGCAAAGAAAGCTTGTTCATTGTGTGGTCGAGTTGATCGGAGTACTAAATTGTTTGGAGATTCTGTAAGTTGTTCTATTGTTTGTCATATCTGATTATGTCTAGTAACGTTTGGTGGGTCTTCTTGGTTTTTTGCTATATGGAACTGTGATATGCATGACCCAGTTTTTAGAAACCGAACCAACCAATGAAATGGTTCAACTGGTTAAACCACGACCTTACACTGACTTCGGTTCAGCTATTTGAGCGGTTCGACCGTGGTTTCATCTGATTTGAGCCATTTAAAGTGGTTGAACTATGACCCGAAGCTCTCATCGATTTGATGTCTAATTCGGTTTTCAAAACATTGGTATGACCTCAATGAATAAACTATAAAATATACATTGCTGCTATTCCTGAAGTCTAGTTTACATAGTTGTTCTCACAAATTTATTGAATTTGCAAGACCATGTTCAGCATTTGAATTCATTTCTGTCAGTGTGTCTTCCTTTCTCTAATATTCTTTTTCAATTTTGCAATATTTGATGGCTGATTTGTTGGGTTTTCACTTTTTTGTACCCATAGTTAATATACAAGATGTAGGGATTCCCTTTCCAGTACCCCATTTTTTAATAACTATTGGTTTAATGGTTGGATACCTATTGTGCTGAATCATATTTTCATCAATGGATGCAGGTTAGGTTGTCAGGAAAGCCTGTTCATATGCATGACCTCAATGAATAAATTATAAAATATACATTGCTGCTATTCCTGAAGAATTGAAAGCAAATTAGGCAATTCTAAAATATTATTCATTTTATATTGTTATCAACAAGACATAAAACTCTTGTAGTAAATAATTGTGATGGAAAACAGTTGGAAGACTAGCCATGGAGAATGTATTTTTCGGAAAAAATGAAAACAATTTTTTAAAAATAATATATTTGTTTTATCTAATGTTTCTAAGTTTAAGTTGAATTGAGTGGAAAGGAAAACAGAAAATAAGGGAAGGAAAGTAAAGGACCCGGAATGGTGATGATGATTAGTGTTTTTATATTTCTGTAAGGCTTGTTTTAGTGATTCATATTTATTGGAGCTAGGAAACAACAGAGAGGGGAAAGAGTAGGGTGCATTGTGATGGTCTTTGAAGAAGATTTTCATTGATAGAAGTCTTTGAAGACAAAAATTTGTTTACAGAGCTGTTCTCACAAAATTATTGAATTTACAAGACCATGTTCAGAATGTGAATTCATTTCTCTCAGTGTGTCTCTCCGTGTCTCCTTTTCTCAAATATTCTTTTTCAGTTTTACAATATTTGATGACTGATTTGTTGGGTTTTCACTACATGTGTTTTTTATACCCATAGTTAATATACAAGATGTAAGAATTCCCTTTCCAGTACCCCATTTTTATTAACTATATTGGTCTAGGGTGGCAATCTGAATTTGTGCGATTTGGAATTTACAGATTACTAACAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05183.15	RdRP	418	998	1.50E-185

Gene family

Gene family	Subfamily
Epigenetic Regulators	RDR6

Gene Ontology

GO term	Description	Category
GO:0048366	leaf development	Biological Process
GO:0048544	recognition of pollen	Biological Process
GO:0016441	post-transcriptional gene silencing	Biological Process
GO:0045087	innate immune response	Biological Process
GO:0051607	defense response to virus	Biological Process

InterPro

InterPro term	Description
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type

trEMBL

trEMBL term	Description
A0A1S2Y902	_

SwissProt

SwissProt term	Description
RDR6_ARATH	RNA-dependent RNA polymerase 6

KEGG

KO	Description	Enzyme
K11699	RNA-dependent RNA polymerase	[EC: 2.7.7.48]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G49500	RNA-dependent RNA polymerase 6
Medicago sativa L.	MsG0380017425.01.T01	_
Oryza sativa L.	LOC_Os01g34350.1	RNA-dependent RNA polymerase, putative, expressed
Cucumis sativus L.	Csa005844	_
Glycyrrhiza uralensis Fisch.	Glyur000785s00024155.1	_
Codonopsis lanceolata	Cl_chr08_30210T	_
Arachis hypogaea L.	AH00G01770.1	RNA-dependent RNA polymerase 6 like

Expression pattern