Gene detail

Detail information of Am03G003600.1 Annotation

Gene ID	Annotation
Am03G003600.1	Nucleotide-diphospho-sugar transferases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G003600.1	mRNA	Chr03	8801144	8805329	-

Sequences

CDS:

>Am03G003600.1
ATGGCGTCGTTCCGACGGACGCTATCGCCGGCGTATCATGATCGCCAGTACCTAAACGGCGCATTTTCGTCGTCGTCTCCATCTCACAAGCTTCCCTCTTCAAACGCCAATTACTCAGCACTGGCGGCGTCGTTTCAGAGACTGGTCGGAGTAGTTTTCATGCGACGGTATGGTCGGAAGGCGCAGTGGCGAAAAGCTGCGTACAGGTGCGTGCTCTGTTTCTTCGTAGGGTTTTTGTTAGGAATGTTTCCTTTCGGTCACGTCGTCGAAGACACTCGTCCCAACAACATGTCTTTCGAGATCAAAACGCCGCGCATCGACGCACAATTGCTTCGCGAGGATCACGTTCCGCAAAAGCTCGGCGGTACAGAAGTCGATGCCGGAGATGATGGTTTTGTGATCGATCCCGTGAGGTTGAGTTTGAGCACGGAGAAGGATAAGGAGCTAAGCCAGAGTTTGACGGTTGACTCTGTGAAGTTCGATTTGGTGGCGAGGAAGCAGCTGATTATTGTAACGCCAACGTACAACCGCGCTTTTCAGTCGTATTTCTTGAACAGGTTGGGACAGGTGTTGAGGTTGGTGCCGCCTCCGATTCTGTGGGTGGTGGTGGAAATGAACTCGGCTTCGATGGAGACTGCGGAATTGCTGAGGAAAACTGGTGTGATGTATAGGCATTTGGTGTGCACTAAGAACTCGACGGATGTGAAGGATAGAGGGGTTCATCAGAGGAATAGGGCTTTGGAGCATATTGACCATCATAGACTTGATGGGATTGTTTACTTTGCTGACGATGATAATGTATATTCTCTCGAGTTGTTTCAGGCATTGAGAGACATCAGTCGCTTCGGCACTTGGCCTGTCGCTATGCTTGCGCCAAGCAAGAACAAGGCTATTTTGGAGGGTCCGGTATGCAATGGAAGCCAAGTGATTGGGTGGCATACAAATGAGAAAAGTAAAAGACTTCGTAGATTTCATGTTGATATGTCTGGATTTGCATTTAACAGCACAATTTTGTGGGATCTAAAGCGATGGCGACGTCCTACTTCAAATCCTATTCGGCAATTAGACACAGTGAAGGAGGGTTTTCAGGAGACTACCTTTATAGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGGTTCCCCTCCTGATTGTTTGAAAATAATGAATTGGCATCTCCATTTGGACGCCCATAATATAGTATATCCAAAGGGTTGGATGCTTCAGAAAAACCTAGATGCTGTCATACCCGTCAAGTAA

Protein:

Promoter(3k):

>AM03G003600.1
GAAGAAACATCATTCAAATACTTACACGTGAACACACTTTTTCAAAGCTAAAAATACTTTCTCTTTCATTATTTCCAATTCCACCTCCCCACGACTGTGAAAAAATGCAGAAGCAAGGAAGAAGCTGTTAAGAAAAATGCAGAAACAAGGGAGAGAGATGAACGGAGAAGAAAGAAAAAAAAAGTTTTATCACTGCATAAATAAGCTTAACCGATTCTATCCACCCGCTAAAACTGTTACCCGCCGGAACCGCACCCGCCGGAACCACCACTTCAAACGGTCGGAAATGGACCTGTTTTAATGTTGCTCGGTTTTCTTTGGATGACCAGTTTTCAAACCGAAACCGGTGTACCCGACCGATTGTCCAGCCCTAGTGTAAAGTTAAACAAAATGAAATGATTTTTTTGGGTAACATAAACAAATATTAACTCTTTGTTTCTTTGTTTAACTTTAGAAATTTATTCACAGCTTTTCTCTTCTCAGTTCTCACGTTTCTTTCTCCCAACCATTTCATTCTTTCTCAGTTTGATTTTTCTCTTCATCTCTTATTAAGTGAGGATGACTACAACTGTGTTGAAGTTCAGATCGTGAAGGTGAACTAGAGCATTAACTTTAACACCAATGTCAATAGATCCAACTTTTTTCTACTTGTTTAGGCTTATGCGAGCTCTTCTTCTCCCCTTCATAATTATTTTTTCTGCATGACTCGGCCGGTTTCATACGAGTCCGAGTCACCGGTTTTTTTAAAAACCGCCGAGTTGCAACGGTTCATGGCGGGTTGACTGCAAGTCCGATCCAAAGAGGTGCTCGGGCCGGCTATGGGTCCGGTTCCCGGTTCGCCCAGTCCGAACGGCCGGTCCGAGCCGAGTTTTAAAACACTGTAGAAGACGACTGCTCTGATACCAAATGTAGGAATTAATCTATCTACAAGACATGCTTATAATCATGAATATACTATAGGGGAAAACAAAGACATACAAGCATGCTTGTATGTCATCAAGAACAAAGTCATGACCTTGATAACCTTAGGATCTACGACATGTTGATATATTAAGGATTAGATAAATACCTGGATCCATAGCAAAGAAGCAGAGAACGGATCCTTACAAGAATGAGTGAATGAAAACGAGCAACAGCTACTCGTCGACTTTATAGTTCTTCCGCAATTGGGACTCCTAATGCCTTAGACTCTCTTCAGATGGGGAGAGGAGAGCAAACATGTGTATATTGCAGTTGGTCTGGTATATTGGGGACCATAGCCTACTTATAGTGTGACAGTCTATTAGGGTTCCCATTATTAGGGGACCATAGCCCACTTGGCTCAGCTTGCGGCTAACTTGGATATTCAAGATGTGATAATTGAGAGTGATTCTCTCGAGATCGTGGAAGTGTGTAGAGGAAACATGGTGAAGCAACAGGTAATTAGTATCACTTCTGACATTTTGGAGCTTAAATCGAGAATTTTAAGGTGTGGTTTTACCTGGACACTTCGAGAAGGCAACACCGTTGCTCACAATCTTGCCCAATTAGCTGCGCGTAACATGCTTCCCGGCAATTGGATGTTCAAACCGCTGAAGCCCTTGAGATGTGCTATAGGTGAGGATAAAAGAAGTATTGTATTGCGGGCAGTTTGATGGTCCGATGAGAATGGTGGTGGCTGGAGGCGCTGCGGAGATTGGGGGTGTTTTAGGGTTTCTTTCCTAATTAGGCCTCTGTCTCACTCTGTAGTAAATGCCAATTATGGCTTTCTGATGATTCCCAACTGTTTTTATGTTTTTTTTTTTGGTCAAGTTGTAATGATTTTTATAGAAATGGGCAAGGCCACAACCAAATACAACAAACATTGCAAAGAAAACCCAAAAGTCCAACACAAGCTATTGGATCAGAGGGTATACAGAGAGAAAAAACAACAGGTTTAAATATAACTTCAGAGGCCCAACAAGAGCAGGCCAACCTAGAGCCCAGTAGAGCCCAAAAACACACGAGAGCAACGAAAGCAATAGAGTATGTTTAAATATAACTGTTTTTATGTTGGGTATTGCTTTTCCCACACCCCCTCCTACTCGAAACACACCCCATAAGGGTGTGAAAAGACCAAAAGGCCAGGCCAAACCTCTTTTTTTTCACGAATTTTCACCTGTTCGAACACGGGCATTCGAACAGGTTCGAATGACATCGTTCGAGTGTGTTAAATTTTGACTTCACACCCTTTTGGGCGTTTTTCACCTGTTCGCATGAGGTCATGCGAACCTGTTCGCATGACCTCGTTCGAACACATTCGAACGACATCGTTCGAGTGTGTTAAATTTTGACTTCACACCCTTTTGGGCGTTTTTAAACTGTTCGCATGAGGTCATGCGAACCTGTTCGAACAAGGTCGTTCGAACAGTCATAAAACACGTCCTCGCAGCGTCTCACGCGAGGTTATTTTTGGAATAAAATTTGTTAAGGGGTGTGAAAGAGTAGGAGGGGGTGTGGGAAAAGCAAAACCCTTTATGTTTAGTTGTTGTTACCGGCGATCCTCTCTGTTCCGGTTGATGGGCTAATGTTGTAAGTCCCATTGTGTATCTGTGTGGTGGAGTTGGATCCACGGTTGTAACCCTTTGGGTGTGTTGGTTTGGGCCTGGCCCGGTTTTATTAAATCAATCCACTTTCGACCAAAAAAAAAGGGGTTAAATAAAATAAAATAAAAACTCTAACCCGTTATGAAAAAACCGGACCTTGGACCCGAACCCAAATAGGATCCGAACCCAGAGAGAGCCGTCTTTCTTTCTGTCGTCAGTTCACAGCAACGAACGACGAAGCACAACTCCAAATAGATCTCTCATCACATCTCTTCTCTCTTTCCCTTTCTCCTTAATCACTCTCACTCTCTCCACCGTTCACTTTCAATCCCTAGTTTTTTAGGGTTTTCGATCTTTCCCCATTGTTCCAATCTCCCTCATGATATTTTAATTTTTTTTTTTAATTTTTGATTTGCTGTGTGTGAGAGGTAAATTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03360.19	Glyco_transf_43	187	395	8.50E-78

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT43

Gene Ontology

GO term	Description	Category
GO:0000139	Golgi membrane	Cellular Component
GO:0009834	plant-type secondary cell wall biogenesis	Biological Process
GO:0042285	xylosyltransferase activity	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0071555	cell wall organization	Biological Process

InterPro

InterPro term	Description
IPR029044	Nucleotide-diphospho-sugar transferases
IPR005027	Glycosyl transferase, family 43

trEMBL

trEMBL term	Description
A0A1S2Y8J2	_

SwissProt

SwissProt term	Description
IRX9H_ARATH	Probable beta-1,4-xylosyltransferase IRX9H

KEGG

KO	Description	Enzyme
K20869	putative beta-1,4-xylosyltransferase IRX9	[EC: 2.4.2.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G27600	Nucleotide-diphospho-sugar transferases superfamily protein
Medicago sativa L.	MsG0380017719.01.T01	_
Oryza sativa L.	LOC_Os10g13810.1	glycosyltransferase family 43 protein, putative, expressed
Cucumis sativus L.	Csa002208	_
Glycyrrhiza uralensis Fisch.	Glyur000011s00000688.1	_
Codonopsis lanceolata	Cl_chr02_17840T	_
Arachis hypogaea L.	AH00G00310.2	Probable beta-1,4-xylosyltransferase IRX9H like

Expression pattern