Gene detail

Detail information of Am03G003470.1 Annotation

Gene ID	Annotation
Am03G003470.1	Rhamnogalacturonate lyase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G003470.1	mRNA	Chr03	8426929	8433770	+

Sequences

CDS:

>Am03G003470.1
ATGGACTTCCTTAATTATTTCATGTTCTTCATGCTTCAATTCACCTTTGTGGTGATGGATAATGGCATAGTCCAAGTCACAATATCAAACCCAGAAGGAATGGTCACTGGAATTCAATATAATGGCATTGATAATTTGCTCGAAGTTCTTAACCAGAAATCGAACAGAGGGTACTGGGATATTGTATGGGACCAGAGTGGGGAGAAAAGAACAAAAAAAACAGCAAAGGGAAAGGGTAAATTTGACAGGATTGAAGCTACAAATTTTAAGGTGATAGAGGAAAGTGAAGAACAACTAGAGCTATCATTCACGAGATTGTGGAATTTTTCTCTTGAGGGAAACCTTGCGCCACTCAATATTGATAAAAGGTTTATATTGCTCCGTGGTTCCTCTGGGTTCTACACCTACGCAATTTACGACCATTTGAAGGAATGGCCTGCTTTCGATCTTGACAACACTAGGGTAGCATTCAAACTTAGGAAAGACAAGTTCCATTACATGGTTATAGCAGACGATCGAAAAAGATTTATGCCACTGCCTGATGACCGGTTGCCGGAAAGGGGCCAAGTTCTAGCCTACCCAGAGGCCGTTCGCCTTGTAAATCCGGTGGAGCCGGAGTTCAAAGGAGAGGTAGATGACAAGTATCAATACTCAAGTGAGAGCCGAAGTAACCGTGTCCATGGTTGGATTTCCATCGATCCATCAAAATCTACTGGGTTCTGGCTAATTACACCCAGCAATGAGTTCAGATCTGCTGGTCCCCTCAAGCAATACCTCAGTTCTCACGTGGGCCCCACTTCCCTCTCCGTATTTCATAGCACACATTATTCAGGGGTGGATCTGATAATGAAATTTGGACAAAATGAGCCATGGAAGAAAGTCTTTGGGCCCATATTCATATACCTTAATTCCCTCTCTGATAGGCTTAGCCCGAACAAGCTATGGGAAGACGCCAAAAAGCAGATGGTGAATGAAGTTGAAAGTTGGCCCTATACATTTCCAGCTTCTGAAGATTTTCTCTCATCAAACAAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACGTTAGTAATGCATTAATCACAGTCGGTGGTGCTTATGTGGGATTAGCATCCCCTGGAGATGTTGGATCTTGGCAAAGAGAATACAAGGGTTATCAATTTTGGACTACTACCGATGATAAAGGCTATTTCTCAATTATTAACGTACGTCCTGGGAACTATAATCTCTATTCCTGGGTCAATGGATACATTGGTGATTATCAATATAATCGCGTCATTAAAGTAACCTCAGGTTGTGAAATTAATGTGGGTGAGCTTGTATATGAACCTCCAAGAGATGGTCCAACATTATGGGAAATAGGTATCCCTGATCGCTCCGCTGCTGAGTTCTATGTTCCTGATCCAAATCCTAAATATATCAACAAACTCTATATCAACCATACTGATAGGTTTAGGCAATATGGGTTGTGGGAGAGATATACTGACTTGTATCCAAATGAAGACTTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTTTTTGCTCAGGTTACCAGGAAGAAAGACAACAACACTTACGAAGGAACAACGTGGCAAATTCATTTCAATCTTGATTATGTTAATACTAAAGGAACCTACAAATTGCGACTGGCTCTAGCATCTGCACATTCTGCTGAGCTACAGATTCGGATAAAGAACTCAGAAGAAAATCCACCTTTATTTTCAACTGGGCTTAGTCTTGGAAAGGACAATACTATAGCAAGGCATGGAATTCACGGACTTTACTGGTTATACAACATTGATGTACTAGGCAGTCTCTTAGTGAAGGGGAACAATACCATCTTTCTAATGCAAGCTGCAAATACAAGTCCCTTTCAAGGAGTTTTGTATGATTATATCCGTCTAGAAGGACCTCCCTCACATAAATAA

Protein:

Promoter(3k):

>AM03G003470.1
TAACTGATTGAAACTAACAAGTCTAACTAGCTGGGACTTTGATTTTAGAAATTGGGAAAATGGGGGGACTAAAATCGTGAAAAAAAAAGTTGGGGGACTAAAATCGTGAGTTGGTCATAATAGATGGAACAAAACTGTAATTAAGCCTTTATACTTTTAGTGAAAGAATTTGTCCGTCGCTAAAAGTTCATTAAATTTGACTTTTAGTGTAGGTTACGAAAAGTTCACCAAATTTAACTTTTAGTGACGGGCGTTATCCGTCACTAAATGTTCACTAAAGTTGACATTAATGACAAAAATCCATCACTAAAAGTGAACTTAATTTGGATTTTATGTCACTAAATGTTCAATAAGTTAACTTTTTGTGAGATAGTTTGTGTCACTAAAATTTACTTTTTTTCATTGTTTTTTCTATCACTAAAATATCATGTTGTCACTAAATTAAACTCTTAGTGACGTCTTTTATCCATCACCAAAATTCCTTAAATTTGGCTCTTGGTGATAGATTAGGTTCGACACTAAAAATTCACTCATTTTGACTATTAGTGACGGATTTCACCCGTCAATTAAAGTTCACGAAACTTCATATAAAAGAAGGTTTTATTAGAAAAAAGTCAACTATCTTCACTTTTAGTGAAAGATTTTTTCAATCATTGTAAGTTCGCTAAAAATAGTGACGGATTTTGTTCATCACAAAAAGTTTACAAAACTTGACTAAATCTTTCACTAAAGCTGAACTAAATTTGGAGTTTATTGACAGATTTTGTCTATCACCAAATGTTCACTAAGTTAGATATTTTGTGTCTCACTAAAATTTACTTTCTTTTCATTGTTCTTTTTTATGACTAAAATCTGTCATAGGTTTTGTCTTTCACCCATTTATTTTTTTTAGTGACGGATGCCCGTTACTAAAAGATCATTAAACTTGACTTTTGGTGATCGTTTATGTTGGTCACTGAAACTTCACTGAATATGACTTTTGGTGATAGATTTGTACGTCGATAAATGTCACAAAACTCGATATTTAGTGACGGACGAAATTCATCACTAAAAAGTGAACTAAGTTTGAAGTTTAAAGATAGATTTTTTCAGTCATAAAAGTTCACTCAATTATACTTTTAGTGATATACTTTAAAATTTTCTTGTTTTCATTGTTTTTTCTATCACTAAAATATCACTTCTAGTGATAGATTTTGAATGTCAACAATTTATACTTTTTCGTGGCAAATTTTTTCTCTAACTAAAAGTTCATTATAATTGATTTTTAATGACGAGTTATGTTCGTCAATAAAAGTTCACTATATTTTACTTCTAGTGATAAATGTTTTCCATTACTAAATGATCCGTAAACTTGACTTTTTGTGATAGACAAAATATTTAACTAAAAGTGAACTAAATTTCTTTTAATCATGTAATCTCTTTGTCTCTTTGAAATATCTTAATCTTTTATTTGCCCCTAATAACTTTGTGTTCAATGCGTTTGATCACCAATACAAAAACAAAAGTGTCACAAGGGAAGCCTTTACCGATCGATTAAGTTTTTTTTCATTCCTTTGTCTCGCTCTGTTGAGAGAAGTCTTTCTAAATTGAAATTATTAAAATTTTATTTGCAAACTATTAAATAGCCTATAAAAAATGATTTTTTTAAAGAACTCTAAATCTCTAATTATAATCAAACTATTAATGATTTTGCAACAAAAACACGGAGAAATAATTCCAGTGATTATGAGGCATCATTTTCTTCATTCGTACAGGCGCACCAAAAATATCAAGGCCGGCTCTGACTAGGGCCTCTATATATAACCTCATGTTCACCCTAATTGTGGTTATTTTATTCTCCTTTATTTGGGTAGCTAGAGCTCCTTATCCTGGAATACTCTCACCCACTTACAAGATGATCCCTTCTAGTCTCATCATAGTCGGCCTTGGCTCATTCTCCCTTATCTTCGCCAATTTGAATATTCGCGCGCGAGGGGGTCCCTAAAATGAGTTGAGACCAAAGTTCACCCTAAATCGAGTAGGAATATAACGGTTATTATACTCAACGACCATCTCGATCCGGTGTTTTGCGGTTATCTCGGACTCCTGGTAAAACAACTCCGTTGTTGCCATATTCCACTAGGCCAAGGAAGGCTATGTGGGATGAATAGGAAGGCTTAGGGTATATTGGGCCGACTTGTTTGGGCTAAGTTGGCGAATAAGTTATGTAGCTCCAGATTCCCTCCATCATCCAATCAAGTTCCTAATTATTCCTTCTTTTTTTATCAAAGTTTCTAATTCCTAATTATTCCTTTTCTATTAAGACATTGTTTTTCCTTCTTGCAATTTCCACATACTTCTCTTGTCAAACCACCTAAACTGCCACCGCTCTCGCGACGAAGTCAAGCCAATATAATATTAGTTATTATAGGTTTTCTGGTCATTGGCACTTAAGTTATGCATTTTGTTAAATTTTCGTTTAAAAGGTTAAGTAAAGAAAGACATAACATTATTTGATGACCAAATATTCAATTAAATCTTTTATGATTTTATTCCATATTTGTAAAAAATGAATATGATGACAGAATGTGACCAAGTGCATGAAGGAGGTAAATAACCATCTATGGAAAATAAACTATAAAGATTCAATTTTAATATCAATAAAAATCTGATATATAATGTTTTTTTTTCATATATGCGATTTCTATAAATTTCATTAAACACGCAATCAAAGAATTTAATTAATTACTTTTTGTAAACAAATAATTTAATTAATTTTGTAATAAAAAAATTTGCCCAAAAATTAATTGTGTAATAATGAAAACCTGATCCCGAAATTAAATTTTTAATTTAATTCTCCTAAAGTGGGATTTGGCTTTTAGAAAAATGTTGGTTGGTTGTGAAGTTATAAACATATATGCTGATGAATGTTTGTGGAGTTATATAATATATGCAGATAAATCATCTCTTACTACCAAGGAATTTCAAACTCTTGTCAAGTAAAGTTCAAAGCAGAGGACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06045.14	Rhamnogal_lyase	16	211	1.10E-85
PF14683.9	CBM-like	453	642	3.50E-56
PF14686.9	fn3_3	368	439	6.60E-25

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	PL4

Gene Ontology

GO term	Description	Category
GO:0102210	rhamnogalacturonan endolyase activity	Molecular Function
GO:0071555	cell wall organization	Biological Process
GO:0005576	extracellular region	Cellular Component
GO:0030246	carbohydrate binding	Molecular Function
GO:0005975	carbohydrate metabolic process	Biological Process

InterPro

InterPro term	Description
IPR010325	Rhamnogalacturonate lyase
IPR029411	Rhamnogalacturonan lyase, domain III
IPR029413	Rhamnogalacturonan lyase, domain II
IPR014718	Glycoside hydrolase-type carbohydrate-binding
IPR008979	Galactose-binding-like domain superfamily
IPR013784	Carbohydrate-binding-like fold

trEMBL

trEMBL term	Description
G7J4L7	_

SwissProt

SwissProt term	Description
RHIE_DICD3	Rhamnogalacturonate lyase

KEGG

KO	Description	Enzyme
K18195	rhamnogalacturonan endolyase	[EC: 4.2.2.23]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G09890	Rhamnogalacturonate lyase family protein
Medicago sativa L.	MsG0380017741.01.T01	_
Oryza sativa L.	LOC_Os08g44020.2	rhamnogalacturonate lyase, putative, expressed
Cucumis sativus L.	Csa002219	_
Glycyrrhiza uralensis Fisch.	Glyur000011s00000713.5	_
Codonopsis lanceolata	Cl_chr02_40720T	_
Arachis hypogaea L.	AH08G08320.1	Rhamnogalacturonate lyase like

Expression pattern