Gene detail

Detail information of Am03G002950.1 Annotation

Gene ID	Annotation
Am03G002950.1	RNA binding

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G002950.1	mRNA	Chr03	7520096	7520886	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G002950.1
AGAGACACGGTTTCACTACATAAGGGATCAGGTGACTACTGGGAAACTGATTGTGGACTACTGTCCTACAAAGCAACAGTAGGAAGATTTATTCACCAAGGCTCTAAAATGTGAGATGTTTACTAGGCTAAGAAGGGAAATTGGCCTGGTTGCCTTCAAATCCTAAAGAAAGCAACGATGTCTAAAAGCTATTCCTAAGGGCTTGTCTTAGGAGATTGTTTTGAATGCTATACCAGGGGCATGTCCTGGATTTCTAAATTCCTTCTTATCCTAGAATTAACCTAAGTGTTTTTTAGGTTTTTGTATTAAGAGAGGATATTGGTTTTTAATAAAAAACCTAAAATACACTCTGGATTTGGTAACAGCTATATAATACAAAACAGATAGCTGTTACCCCAGCAGTCCAAGAAAACAGATTTTGTTATCTGTTTTAGTTACTTACAAAGTAGTTAGAGCCAGTTACAATCTATGTAACCAACCCTAACAAACCCTTAGAAGGGTCTTTCATTTTATATAAATAACCTATAGGCTGTATACAATTACACACAGAAAAAATTGAATGAGAATTTTACATTGAGTTTAGTTTTTACAAGTCTTCAATCTCCAGTTCTCTCTGTTACTGTTACTGTGTAGCTTTCTTCATCGTGTACAGCAAGTGGTTGTACCTCACAAGAAGAGAAAAACAGAGTGTGTTATTCTCAGGTGAGGAATAAGAGTAAGTAAAGAAAGATAAGAGAAACAGTGAGAAGAAAAGAAAGATATACCTGTTCATACTCTTCTGAGGGAGTTCTCAAAGTGAGAGACTCAAGTGTTTCCAGATTTCGTTCATTGTGCATACAAACAGAAAACTCTAAAGTGAGTTGGGGTTTAGATCAAAAGAAAAACAGAATAAATTACAGAGTAAGTGACTTATACCTTCTGTTGTTGATCACTTTCTTGCTTGGCTTTAAATCATTCTCTGTCTCACACGTTCAAGCAGAAAACACAAGCCAAGATTAGGGTTTGTGTTAAGGAAACAAAGAAGGTAAAGAAAACTACGAAAATAAGTGTTCATTACCTGTATGAGAGTGTCTGATTCAAAACCCAGTAACCATACCCTTGTAAAACCAGAAACTCAGATTAGGTTTTTCTGAGACTTCAAATTTGAAACGCAAAAGAAGGGGTTTTTGCGTGAAACCAGTGTTCGAAGCCTTGTGGTGGAAGATTGAAGTTGTTTCAAGCTTCAATCATCAAGCTTGCTCACGAAAAATCAAACCCTAGTAGGGGCTGTGTTAGAGAAGACGAAGAAGACAGAACGGCGTGGAACCAAGAAGAGAGAGAGTGAAATCTTGAATTTCTGGTCAGTGACCTAGTTTAGAGGCTTTTATACTACGGGTCAAAGAAGATCTGCGTGTTGCTACAGTTGCTGAATCTGGATTCCGCAGGAACCCGTTTGGCAGCCAAGTTGGGCTACTGTGGTATTTTTTGGTGCTTGTGGGCTGACTCAGTGGGCTGGATAGTTGCTATTTGCACCCCTACTGTTTCATTTTGGCAACCCGAAAGAGAAAATCAATAAATGGTTAATAAATTCAATATAAACAGGGAAAAGGGAACTTGGCACAGCGGGAAAACGAATTGATGCAGGGAGAAATGAAAAGAAACAAATTTAAAAGGGGAAAAATAATTGAAAAGATAACCGAACCTAAATGCTGAAACGAGACATACACAGAGCAACACAGATGGAAGAGGAAGAAGACGCACATGGAGCAGCGCCGTCGAACATAGCTGCGATTGAAACAAGACGTAACAAGCCACAACATCGTTTCTTCACTTTTTCTAAGTTTTAGTGTTTCTTATTGAGGGAATCGAACAGAAGACTGAGAAGAGGAAGAAAAAATGTGGAGAAAAACTCATCTGAGTCAAAAATAAGGTACTGGACAGGTGCTAAAAATGGACCGTCCGGTTTTCAATAACCACCCTCGGTTCTCCGGTTTTTGACCGGTTCAAAGCGGGTTTTCCGGTTTTTTCCCGGTTCTTGCCTCCAACGGGTTAATAGAGCATAACCGAACCGTAGACACATCCGGGTTTTCCCGGTCCAACCGGTTCAACCGGCCGGTTCGGTTTCAACAACATTGCTTAGGAGTGACATTAAATGCTTGTTTGGATACGCGGTTGCATAGTCTAGTCGCACGACTGCAATATCAAACGTGATTTTAAGGTATTTTGTTCTTCACAACAGCCATTTTTTACCACACAACAAGGCTCAAAAATCATGGCAACAGTGAAGCAAGAAATTGTAGCTTCCACGTCCAAGAAATCACGGCATCAAGAATTAAGAAATCAAGGTGTTTGCTAACAGATAAATTTTCTTTTCTGCCCTTCATAAATAGCCTTCATCACCTGCCTTTCACCATCAAACACAACAAATGCATGGTTAAAAACATATTTTCACAACCTAAGAGCTAGACAAACATGCTTTTACCGCCAAACACAATCAGATTTTTAAAACTAATTACAAGTTGACACGTAATTAAAAAGAAGTTAGTGAATTGGTATTTGGTAACCACCTTATATATCAACCATTCCATGAATTGTTATTGGTTATAGTTGTATAAGTTTATTCACTGTATGTGTACATAAATTATACTCAAAATATAATTTATGGCTTGTAAAAAGGTGATAGGAAGGAGAGGGAAGAAAATTAAATCGATGTAGGGCCATTTAGGACGGTTACACTTGAGGGGGGGGGGGTGTCCTTCACATATGAGGGGGTATTCTTAATAGTATTAGCCTAAAAACATCATTTAAACCCAATCCAAAATTTCACTATTGGGCTAGACCAGAAGTCCAAAAGTCATTGACAAAAAAACTATTTTCTAATTTTATTTTCCTTGCAAACACAAATCCTGTAACAAACAAAATAAACAAAAAAAACTGAAAAACCCCAATTGGTAAAACCCTAGAAAAACAGAGAGGCAGCGGGAGAGAGGAGGCAGAGGCAGAGGCAGAGGAAGAGTAAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03657.16	UPF0113	104	182	6.00E-23
PF17833.4	UPF0113_N	2	90	8.30E-22

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0030687	preribosome, large subunit precursor	Cellular Component
GO:0042255	ribosome assembly	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0005730	nucleolus	Cellular Component
GO:0042273	ribosomal large subunit biogenesis	Biological Process

InterPro

InterPro term	Description
IPR005155	UPF0113, PUA domain
IPR016686	Ribosome biogenesis factor, NIP7
IPR015947	PUA-like superfamily
IPR036974	PUA domain superfamily
IPR002478	PUA domain
IPR040598	60S ribosome subunit biogenesis protein NIP7, pre-PUA domain

trEMBL

trEMBL term	Description
I3ST48	_

SwissProt

SwissProt term	Description
NIP7_XENTR	60S ribosome subunit biogenesis protein NIP7 homolog

KEGG

KO	Description	Enzyme
K07565	60S ribosome subunit biogenesis protein NIP7

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G15770	RNA binding
Medicago sativa L.	MsG0380017788.01.T01	_
Oryza sativa L.	LOC_Os07g47420.1	60S ribosome subunit biogenesis protein NIP7, putative, expressed
Cucumis sativus L.	_	_
Glycyrrhiza uralensis Fisch.	Glyur000028s00003514.1	_
Codonopsis lanceolata	Cl_chr01_05130T	_
Arachis hypogaea L.	AH14G42810.1	60S ribosome subunit biogenesis protein NIP7 homolog like

Expression pattern