Gene detail

Detail information of Am03G002520.1 Annotation

Gene ID	Annotation
Am03G002520.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G002520.1	mRNA	Chr03	6369429	6375957	-

Sequences

CDS:

>Am03G002520.1
ATGAGCAAAAGGCCACCACCTGATCCTGTGGCAGTTCTACGAGGTCATCGTGCTTCTGTCGTCGATATTTCTTTTCATCCCTCTAAGCCTATACTATTCTCCGGTTCTGCTGATGGTGAACTGCGGATTTGGGATACCTTTCGGCGACAAACAGTTTCATCAGCATGGTTACATAGTGGCGCCCATGGGATTGCTGCTGTTGCCAGTAGTTCTTCACTTGGACCCAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTGAAAGTTTGGGATTTTGATGGTGCTGGTTTGTCTAGGATTCCATCTGTTACAATCAAGACGAATAGTTACCACTTTTGCAAGCTTTCCACGGTGAAGACTCAATCTACTTGGTTGAAAGAAGGGAAGGCTTCAAAAGATTGCGATGAAATAGAACAGACTGATACCAATCAAAGTTGTTCTGAGAGCTTTGAAGGGCTATCATATCTGGCTTTGTCAGGGGAGAACTCTTCCGAGGTTGAAATTTGGGATCTCAAGTCTGCTGAAAGATCTGTGCGACTCCCTTCAAACGTTCTTAATAACTCTTCAAGTGCTTGCAACAAAGATAGAGGGATGTGCATGTCACTTCAATTGTTTTTACCATCTGAATCGCAAGGATTTTTAAACGTCTTGGCTGGATATGAGGACGGTTCCATGCTTTGGTGGGATGTGCGGAATTCTGGAGTCCCAATAAGTTCTGTGAAATTCCATTCCGAGCCAGTTCTGAGCATCTGTATTGACGGGTCTTGCAAAGGAGGAATCTCTGGAGCTGCAGATGAAAAAATTGTGATGTACAGCTTGGATCATTCTTCGGGTACCTGTGTGGTCAATAAAGAAATCAAATTGGAGCGACCTGGCATCTCCGGAGCCTCAGTTCGGCCTGATGGAAAAATTGCCGCAACTGCTGGTTGGGATCACAGAGTAAGGATATACAATTATCGCAAAGGAAATGCTTTAGCTATTCTAAAGTATCATCAAGCCACGTGCAATGCTGTAACATTTTCTTCTGATTGTAAGGTTATGGCCTCTGCGTCAGAAGACACAACCGTGGCGCTATGGGAATTGTATCCTCCTCGAACATAA

Protein:

Promoter(3k):

>AM03G002520.1
ATGTAATAGGTGAATGATGTGGTAAGAAAAGAAAAATAGAAAGATGGAAAGGATATTAGATGAGTGTTGATTTTTGAGGGTGTTCAAAAATACACTCAATTCTAAGACAAACTAAAATCATATATTCTTTGTAATCAATTCTATAATCGTTGGATCCAAGTCTTTTTCATTTTTTGCATTACTTCTGCTGATAATGTTATATTGTATCATTCTTGCAATGCATAATTGAGTCTTGTGATTTTATGCTTTGTCGTAAAGTCACTTAAAACTTGAAAGAACATACTTAAAGACTAGTACTCAGTAAAATATGTATTACCACACTAACATACTTTACTTGAAAGCAATATCTACAACACAACACAACCTATATACTATAAATACCACTCCATTTGCTCATTCTTCCTCATCCCTTCCCTCAATTCTCTTCTTCTATTCACATACAATACAATTGCAATGGCTTTTTCTAAAACACTTGTCCTGGCCTGCACCTTGTGCCTATTTGTGTCCATGGCTTGTGGACGCGATTTCTCCATTGTGGGCTATTCATCAGAGGATTTAGAGTCCATGGATAACCTCATCCTACTCTTTGAATCATGGATATCAAAACACGGAAAGATTTATGAGTCAATTGAGGAAAAGCTACTTCGGTTCGAGATTTTCAAGGATAACCTCAAACACATAGACGAGAAGAACAAGGTTGTCAGCAACTATTGGCTTGGACTCAATGAGTTTGCTGATTTGAGCCACCAAGAGTTCAAGAACAAATACCTTGGCCTAAAGGTTGACGACTCCTCTAAAACAAGAGAATCACCTGAGGAGTTTACTTACAGAGATGTTGATTTGCCTAAATCAGTGGATTGGAGAAAGAAAGGTGCTGTCACTCCCATCAAGAATCAAGGCTCATGCGGTAAGCAATACTATACATACATATGCTAACTATCTATCACCGGTGTCTATGTGTTAGTGTCGTGTCTGATGTCTGTATCGACGTTTCAAATGACATGATCATGAATGTGTAAATACTTTTGTATTATAGGTAGCTGCTGGGCATTTTCTACAGTTGCTGCAGTTGAGGGAATAAACCAGATTGTAACGGGGAACTTAACATCCTTATCAGAGCAAGAGTTAATTGACTGTGACAGAACCTTTAATAATGGTTGCAATGGGGGTCTCATGGACTATGCATTCTCCTATATCATACAAAACGGTGGACTCCATCAAGAAGAAGACTACCCTTACATTATGGAGGAAGGCACTTGTGAGATGAAAAAGGTGTGTGTGTAAACTAACAAATAATACTTTTGTGACTGAACTTTCATTCATTCACTCATATTTGTTTTACTTGCCATTCTTTCACCAGGAACAAACCAATGTTGTCACTATTAGTGGGTATCATGATGTGCCACAAAACAATGAACAAAGCTTATTGAAGGCACTTGCCAACCAACCTCTCAGTGTGGCCATAGAAGCTTCAAGCAGAGATTTCCAATTTTATAGTGGAGTACGTTACTCTTTCTAATTAATTCTAAACTAGTTTGTTATGAAGCTTTTTGTTTATGTTAGAAGGGATTAGTTAATCTTATTATTGTCATATATAGGAAGGAACTAATAATTTTGTTTGTTATGGAAATTTTATAGGGTGTTTTCGATGGCCATTGTGGAAGTGACCTAGATCATGGTGTGGCAGCCGTTGGATATGGGACATCAAAAGGCATTGATTATATCATAGTGAAAAATTCATGGGGAGCAAAGTGGGGAGAGAAAGGATATATAAGGATGAAGAGAAACATTGGAAAGGCTGAAGGGATCTGTGGACTTTATAAGATGGCTTCTTATCCTACTAAGAAGAAATAGTGTTTTCTGTTTGGCTCACCAGTTGCTTGAATTTATTTCCTTGTTTCACTTTTACGAATTCCTAATGTCTGTTATTTCCATGTTCTTCTTTAAAGCAATGTAACGTCTTCAATCAATACAATAATATTCAGTATTTTTGTGTACCCAAAAATAATCTATTAATACAATTCATTTACTTTTGCTTTGTTTCCTTTCCTATACATACATATCGTGCAAAAATTTTAAGTTATTTATTTGTCACAAATTAGTCTTTTAAGTTTCTTTTTTTACCAATTAGGTTTTTAAGTTAACGTGTACATCATTAGCTAGGGGTGCTTGCGATCCGACTTGGTACGGTTGGTGGAAAAAAAAACCACGAGCCGAACCAAACCGCGCAGTTGAAAAAAAGCCTGAATATATATGATAAATATTGTTTTTTTTGTGATTTTTGTTTGGTTTGCGGTTTTCTATTGGGTTGGTTTAGTTTTGAACATCCCTACCGTTAGCATTTTTCTCATTTTCCGTTTCAAACAAACTCAATTGGCATTAATATAGCTAACTATCTGTAACGAAGTCTACGTGGGTTCCTCCGGTGTTCATATGTCCCTGTTTTTTTCCGACTAATTATCTTTATCTTCAACCCAAAAAAAGAAAACTTAGGAATTCAAAAAACAAAAGCAAACCCATAAACACATAAACCCCAACTCCATCTTCTTCCTCCCTCATGAACCCTAAAATTCATTTATTTTTTTTCAAAATCTGAATTCAATTTTAGGGTCCACTCTTCCAAAAAAAAATCATATTTTATTTTATACGTAGTAAAAATATATTTAATTTACCCATTTATTATTTATTATAAATTGAAAAAAAAGACATAACCCCCAAACTGAAAGACACCCTAGTCTCAAGCCAGCCCCAGAGCCCTGTGCCCCACACCAGCCCATCTCCGACAGCCGCAAACCACCGGGCACCCCACTGCGCAGTTTCCTGACAACAGCGGTAGTACAGCATCCCCAAGCGCGCGTACTGCGTCGTTGGCTTCTCTCTATTTGAGTATTTAAACTCCATCAATTCACATTCTAGAACAGTCTAATACAGACAGTTCGTTCAAGTCAATATAAGTGATCTTTAGAATTTGATAAATAAATAAATAAAGAGGAACGAAGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	9	45	1.10E-20

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:2000280	regulation of root development	Biological Process
GO:0009793	embryo development ending in seed dormancy	Biological Process
GO:0006282	regulation of DNA repair	Biological Process
GO:0031570	DNA integrity checkpoint signaling	Biological Process
GO:0006974	DNA damage response	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A9D5A9D7	_

SwissProt

SwissProt term	Description
DSE1_NICBE	Protein DECREASED SIZE EXCLUSION LIMIT 1

KEGG

KO	Description	Enzyme
K24770	protein decreased size exclusion limit 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G29860	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0380017834.01.T01	_
Oryza sativa L.	LOC_Os06g04040.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa010930	_
Glycyrrhiza uralensis Fisch.	Glyur000028s00003572.1	_
Codonopsis lanceolata	Cl_chr05_46080T	_
Arachis hypogaea L.	AH08G01170.1	Protein DECREASED SIZE EXCLUSION LIMIT 1 like

Expression pattern