Gene detail

Detail information of Am03G002100.1 Annotation

Gene ID	Annotation
Am03G002100.1	PAM domain (PCI/PINT associated module) protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G002100.1	mRNA	Chr03	5351348	5356425	+

Sequences

CDS:

>Am03G002100.1
ATGACTCAAGATCTCGAGATGAAAGACCGCTCAACGCCCTCCAATTCCGTTTCTCCACCTGTTCCATCTACTTTGCAGAATTTGAAGGAGATAGCATCTCTTATCGAAACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGTGCTGTTCGCCTTACAATTGCATTGAGGCGAAAATTAACTGCATCTGTTATATCATCTTTTCTGGATTATGTTCTCACTACCGGTTCTGAGCCTCATACCAAATTGTCTGCCTATCTTCCCAAGGAGGATGATCACGAGATGGAAGTGGACGCTGCAACATCTGCTATTCAAATCCCGGCTAAACATTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTTTTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCTAAAGCTTGTTCCTCGGCAAGCATTGCTTTGCTAAAAAACGTTAACAGAAGAACTGTCGATGTTATTGCATCTAGACTATTTTTCTACTATTCATATAGCCACGAGCTTACAGGAGATCTTGCTGAAATTCGGGGTAACCTCCTTGCGTTGCATCGGATTGCCACCCTGCGGCGTGATGAGTTGGGACAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAAGCAGAGAAGTTGAGGTCCAAGGCTCCACGCTTTGAAGCACATTCAAACCAGCAGTTCTGTCGCTATCTATTTTACCTTGGTAAAATTCGGACAATTCAGCTGGAGTATACAGATGCAAAAGAGTCTCTCTTGCAGGCTGCTCGGAAAGCTCCAGTCGCAGCCCGGGGTTTTAGAATCCAATGTAACAAGTGGGCTGTCATAGTGCGTTTACTGTTGGGAGAAATACCGGAGCGGACTGTCTTTATGCAGAAAGGAATGGAAAAGGCATTGAGGCCTTACTTCGAGCTTACAAATGCTGTCAGGATTGGAGACTTGGAGCTGTTTAGGAATATTGCAGACAAGTTCTCCACCACCTTCAATGCAGATGGAACACATAATTTGATTGTTCGTTTACGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGTATCTCACTGGCTGATGTTGCCAAAAAGTTGAGGTTGGATTCTCCAAGTCCTATTGCTGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGGGCTATTGATGCTACATTAGATCATGCAAATGGGTCGATGGTGTCAAAGGAAACTGGAGATATTTACTCCACGAGTGAGCCTCAGTTGGCTTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAGGCTGTTAGAGCTCTTCGTTTTCCACCAAACACACACAAAGAAAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAACTGGCCAAACATATTGCAGAGGAAGACGACGATGATTTCTGA

Protein:

Promoter(3k):

>AM03G002100.1
GTGTCCAATCAAACTGCACTCCTTTCTTGAGAAACTTGTAGAGCGGTAGGGATTTGTTTGCTGACTTCGAAATAAAACGGGACAAGGCTGCGATCATCCCGATAAGCTTTTGTATCTCTTTCTTCGTCGTGGGCGGCTTCATTTCCGTCACCGCTTTGCACTTATCTGGGTTGGCTTCAATACCTTTCTCGATGAAGTAAAAACCAAGAAATTTGCCAGCCCTTTTTTTTGGGTTGAGCTTGGGGGAGTTTTTCGGGCCTCAGCGAACACTTCTTGGAGATCAGCCAGATGGTCTATGTCTGCTTTGCTTTTCACGATCATATCGTGCAGATAGACTTCGGCGACCCGTCCTATTTGGGCTTGAAAAACTTTGTTCGTCATCTTTTGATACGTCACCCCAGCATTCTTCACCCCCAACGACATCACTCGGTAACAGTAGTTCCCCTTTTCGGTCATAAAGGTCGTCTTCTCTTGGTCAGGCAGATACATCGCGATCTGGTTGTACCCCGAATAGGCGTCCAGGAATGACAACAAACGGAAACCAGACGCGTTATCGACCAGCTTGTCGATGCTGGGGACCGGGAATGCGTCTTTCGGACAGGCCCGATTCAAATCCGTGTAGTCGACACACATTCGCCATTTGCCATTTGATTTTTTGACCAACACGATGTTGGATAGCCAGGTTGTATATTTTATCTCCTTCACGAACCTAGCCTTAATGAGGTCTTCGACCGCTTTTTCTGCGGCTTGGGCTTTATCTTCTCTCTGCACTCGCCGCCTTTGGGAAACATACTTGATTTTTGGATCTACCACCAAATGATGGCACGCTACTTTTGGTGAAATCCCCGACATGTCGGCCGCGCTCCACGCAAATAGGTCGGCATGGTCTCTCAGACACTGTACTAACTTCTCTTTCACGTCATCAGGCAGATCGACCCCGATTTTGACTGTCTTTGATGGGTCTTCGCCTGGCTGTACCTGGATGAATTCACCGTCGGGTTTCGGCCTCTTAATTTGTTTCTTTAATTCCCGGGGTCAGGGCGTCATCCCCTTCTTCTTCCTCGCTATCGGGGTCGTAGCGGGCATCTAAGTCGACCGCGTTGACCTGGTGGCTTTCAACTGCTTTGCTCGCGACTTTCTTCCTCCTTGACTCGACTTCTCCTTGCTGCTTCAGACTCACGAAGTGACATCGTCGTGCTGACTGGAGATCGGCCTGCAGAGTTACAATCTCATCTGTGTTCAAGTAGAATCTCATTTTAAGGTGCACCGTGGAGGCGATCGCTACGAGCCGTCCAAGCGTGGGTCGGCCAAGAATACACTGATAAAATGACTTACAGGGGAGGACTAAAAAAGGAGTCTTGACTGTTCGAGATAGCGCTTTCTCTGTGCTGTCATCGCCGAAGGTGACCATCAGCTCAAGATGGCCTAGGGGCGTGGTGGACGACCCGTTGAACCCGTAGAGGTCGCTTCCTTGGTAGGGAATGAGGTCGTCCTGGGAAATCTTTAACACATCCAATAGGTCTTCGAATATGATATCAGCGAAGCTCCCTTGGTCAACTAAGATTCTTCTGATTTCTACGTTAGCCATCACCGCTGTGATCAGAAGGGGAACATGCTTGTTTGGCCTTCCGTCCAGTAAGTCGTCATCCCCAAAAGCCAGGACGGGTCTGTTGGACTTAATTCTCGGGGCGGAGGTCGAGGTGATGCTCATGGTCTCTCTCCACCGCCTCTTCATTGACTTGTTAGTTTCTCCTCCTTCCAAAGTGAACCCGCCTGAGATGACCATCGCTATCGGGCGGCCTTTGGATTTTTTAGTATTGATTTCTCCTTCGGAGTCACTGTGGTTATCTTGGGCGGCCTTCGTCGCTCTGGCCACAGTTTTCTCCTTTCAAGGGGAGCGTCGGGCGAGTCTGGTCGGTGACCGGCTTTCCCCTTTCGAGGGGGCGGCCGCGGTTACCGTGAGGTCAGCCAGAGGAGCGAGATCAGGACGGACAACAGGCACGGCTGCCTCTGCCGTGACTGCGATGCCTTCTGGCGCGGGTTGAGAAGGAATCTCGGCCGCACTCTGCAAGCGCGGGGCCCGCTTGCTGGGCGGTCAACCCCGCGGTGCCATTTCAGTAGATGAGGTGGTAGCTGATGAAGTGGGGTAGCGCCGGGGCTTCCACTTTGGTCGCCAAATAATATGTACCTTGATCGTCCAAGGGTAGGACGGGTATGTTACTTGGTCGTTCTGTCGGACCATGAGGTCGCGAGGAAAGCTCAGGATGGGTGTACCTGCAAAGACACTCCGACGCCCAAGTCAGGGAGGAAGAAGTCAAAGCAGGAAATAGGAGATGAGATGAAAAAGTGTACATTTCCGCAGGGGTTGACCCCCATTTATAGAGTTCGGCGTAGCTCCCTAGCCGTAGGATCAACCGGCTCGATCTCAGCCGTTGAACTGCTCCTAACTCGTTTAGGAGCGCTCCGCGCTACAGTGCCCTGGATTGGTTTGGGTCTTCCTTGTGGATTGGGCCGTCAGCCCAGTCCAGAACACACATCATTCGCCATTCGCTAGCTTATCCGCTATAAGCTATCCACTATCAGCTAGCTTATACGCTATCCGCTATAAGCCCATCCACTAGCCGCTAGTTTATCCATTACTTTTTGTCAAACAGAGCCATAAACTAAGGCTATAAGTTGGTGGTCGCCAAACACTTATTTTGCTTTTATAAGCTTATCGGCTAAGCGTTTCTAATTAGCCCTACAAAAATTATTATGAAAAAAATTAAAGACTCTTTGGGGGTGCATGATAGTAAAACAGAGGTGTCTTTAGTTATTCCCAATTAAAAATATTGAGATCATAACATAAAAAAGAAAAAAAGAAACAGTGGAACGGTGCGTTTAAACGTCGGAGAGAGCAAAACAGTGTGAGCACTTTGCTTCCTCTCTGGTCTTCTTCAGTAGTTAGGGTTTGCATCAGATTCTTTCAAATTTTGCTCATTTCAGTAGATTTCGTTAAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08375.14	Rpn3_C	420	486	6.70E-27
PF01399.30	PCI	311	416	8.20E-23

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0008541	proteasome regulatory particle, lid subcomplex	Cellular Component
GO:0030234	enzyme regulator activity	Molecular Function
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR036390	Winged helix DNA-binding domain superfamily
IPR000717	Proteasome component (PCI) domain
IPR013586	26S proteasome regulatory subunit, C-terminal

trEMBL

trEMBL term	Description
G7J5U6	_

SwissProt

SwissProt term	Description
PSMD3_TOBAC	Probable 26S proteasome non-ATPase regulatory subunit 3

KEGG

KO	Description	Enzyme
K03033	26S proteasome regulatory subunit N3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G20200	PAM domain (PCI/PINT associated module) protein
Medicago sativa L.	MsG0380017881.01.T01	_
Oryza sativa L.	LOC_Os08g43640.1	26S proteasome non-ATPase regulatory subunit 3, putative, expressed
Cucumis sativus L.	Csa013981	_
Glycyrrhiza uralensis Fisch.	Glyur001384s00028577.1	_
Codonopsis lanceolata	Cl_chr07_21410T	_
Arachis hypogaea L.	AH08G01720.1	Probable 26S proteasome non-ATPase regulatory subunit 3 like

Expression pattern