| Gene ID | Annotation |
|---|---|
| Am03G002010.1 | Pentatricopeptide repeat (PPR) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am03G002010.1 | mRNA | Chr03 | 5138651 | 5141361 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 147 | 189 | 2.20E-85 |
| PF13041.9 | PPR_2 | 187 | 226 | 2.20E-85 |
| PF13041.9 | PPR_2 | 246 | 295 | 2.20E-85 |
| PF13041.9 | PPR_2 | 289 | 326 | 2.20E-85 |
| PF13041.9 | PPR_2 | 316 | 360 | 2.20E-85 |
| PF13041.9 | PPR_2 | 352 | 396 | 2.20E-85 |
| PF13041.9 | PPR_2 | 402 | 433 | 2.20E-85 |
| PF13041.9 | PPR_2 | 425 | 469 | 2.20E-85 |
| PF13041.9 | PPR_2 | 456 | 503 | 2.20E-85 |
| PF12854.10 | PPR_1 | 244 | 275 | 1.20E-76 |
| PF12854.10 | PPR_1 | 278 | 309 | 1.20E-76 |
| PF12854.10 | PPR_1 | 348 | 380 | 1.20E-76 |
| PF12854.10 | PPR_1 | 454 | 485 | 1.20E-76 |
| PF01535.23 | PPR | 250 | 279 | 1.40E-60 |
| PF01535.23 | PPR | 284 | 314 | 1.40E-60 |
| PF01535.23 | PPR | 319 | 349 | 1.40E-60 |
| PF01535.23 | PPR | 354 | 383 | 1.40E-60 |
| PF13812.9 | PPR_3 | 243 | 291 | 7.60E-55 |
| PF13812.9 | PPR_3 | 305 | 361 | 7.60E-55 |
| PF13812.9 | PPR_3 | 341 | 398 | 7.60E-55 |
| PF13812.9 | PPR_3 | 444 | 502 | 7.60E-55 |
| PF17177.7 | PPR_long | 238 | 345 | 9.20E-32 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0010019 | chloroplast-nucleus signaling pathway | Biological Process |
| GO:0009507 | chloroplast | Cellular Component |
| GO:0031930 | mitochondria-nucleus signaling pathway | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| trEMBL term | Description |
|---|---|
| G7J5W4 | _ |
| SwissProt term | Description |
|---|---|
| PPR54_ARATH | Pentatricopeptide repeat-containing protein At1g20300, mitochondrial |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G20300 | Pentatricopeptide repeat (PPR) superfamily protein |
| Medicago sativa L. | MsG0380017889.01.T01 | _ |
| Oryza sativa L. | LOC_Os09g37070.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa002019 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001422s00031016.1 | _ |
| Codonopsis lanceolata | Cl_chr01_28840T | _ |
| Arachis hypogaea L. | AH13G17140.1 | Pentatricopeptide repeat-containing protein At1g20300, mitochondrial like |