| Gene ID | Annotation |
|---|---|
| Am03G001690.1 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am03G001690.1 | mRNA | Chr03 | 4392748 | 4395599 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 184 | 227 | 7.40E-97 |
| PF13041.9 | PPR_2 | 324 | 371 | 7.40E-97 |
| PF13041.9 | PPR_2 | 397 | 438 | 7.40E-97 |
| PF13041.9 | PPR_2 | 462 | 497 | 7.40E-97 |
| PF13041.9 | PPR_2 | 497 | 542 | 7.40E-97 |
| PF13041.9 | PPR_2 | 605 | 650 | 7.40E-97 |
| PF13041.9 | PPR_2 | 637 | 674 | 7.40E-97 |
| PF01535.23 | PPR | 184 | 213 | 1.80E-85 |
| PF01535.23 | PPR | 465 | 494 | 1.80E-85 |
| PF12854.10 | PPR_1 | 459 | 491 | 2.30E-80 |
| PF12854.10 | PPR_1 | 529 | 555 | 2.30E-80 |
| PF13812.9 | PPR_3 | 184 | 226 | 4.30E-73 |
| PF13812.9 | PPR_3 | 311 | 371 | 4.30E-73 |
| PF13812.9 | PPR_3 | 381 | 441 | 4.30E-73 |
| PF13812.9 | PPR_3 | 452 | 511 | 4.30E-73 |
| PF13812.9 | PPR_3 | 521 | 581 | 4.30E-73 |
| PF13812.9 | PPR_3 | 563 | 616 | 4.30E-73 |
| PF13812.9 | PPR_3 | 626 | 673 | 4.30E-73 |
| PF17177.7 | PPR_long | 186 | 374 | 6.70E-39 |
| PF17177.7 | PPR_long | 350 | 430 | 6.70E-39 |
| PF17177.7 | PPR_long | 435 | 587 | 6.70E-39 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0006397 | mRNA processing | Biological Process |
| GO:0009507 | chloroplast | Cellular Component |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| trEMBL term | Description |
|---|---|
| A0A072VDR6 | _ |
| SwissProt term | Description |
|---|---|
| PP413_ARATH | Pentatricopeptide repeat-containing protein At5g42310, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G42310 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| Medicago sativa L. | MsG0380017931.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g36390.1 | PPR repeat containing protein, expressed |
| Cucumis sativus L. | Csa013191 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000963s00023043.1 | _ |
| Codonopsis lanceolata | Cl_chr02_09590T | _ |
| Arachis hypogaea L. | AH17G22800.1 | Pentatricopeptide repeat-containing protein At5g42310, mitochondrial like |