Gene detail

Detail information of Am03G001230.1 Annotation

Gene ID	Annotation
Am03G001230.1	ARID/BRIGHT DNA-binding domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G001230.1	mRNA	Chr03	3313241	3322314	+

Sequences

CDS:

>Am03G001230.1
ATGGAAGGTGGTGAGAGACTGGGGGACGACAATTCCCATGGCAATTCAGACATGGATATAGTTGATGCCACTTTGCAAAATCAACATTTAGATAAGGATCAAAATGTGGATGCTGAATCGCTTCCTCACAATTCCCCTACTCAGCTACAACAACAGGATAAGGATCAAGTGATGGTTGATCAAAGTGATGATACCAAAAATGTCGATTCTACTTCCAGTCATATGCCTGAAATCAAAGTAGTTAGTGAGAATCAACATGAACTTGAAGATGCCAAAACCATTTCCCACCAAGATCTAATCACTCCAAAGCCCAAAGAAAAGAATGTCAGAGAAATGAAGAATGTGCTAAACAATACCGAGATGACTGCTTATGACGAGGCTGGTACGAGTCTGGAACGAGAAGCATTTATGAAAGAGCTCGAGAGTTTCTACAGAGAGAGGTTCATGGACTTTAAGCCTCCTAAGTTTTACGGAGAGCCACTGAATTGCCTCAAGTTATGGAGAGCTGTTATCAGACTGGGTGGCTACGATGTGGTAACTGCATCCAAGTTATGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACCTGCACTACAGTTTCGTGGACCTTTAGAATCTTTTATGAGAAGGCACTTCTAGAGTATGAAAAGCATAAGAAAGAGATTGGGGAACTACAGCTCCCTGTTGGATCATTCCATCAACCTTCAAGTGTGGAAAAAGAGACCGCTGTTAATCAGGCTCCAGGCTCAGGTAGGGCCCGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTCGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTCCCACAACAAAGCGTGAAAAGAACCTCAAAAGTATTGGTGTGATTAACAAACAGAGGACACCATCTGGTATGGAGCAGCATGCCGACAAAGCTGCAAATATAGGAGATAGACAATTGGTCACAGCAGTAGTGGACATTGGACCCCCGGCTGACTGGGTGAAGATCAATGTGCGGGAAACGAAGGATTGTTTTGAAGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGACCCAGTTGGACGTCTTGTTATAACTGGTTTGCCGGAACAGGTTGACAATCCATGGGGAATTACCCCTTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAAACATCTGCCGTTGTTAGTTTGCACGGTCGACTATTTGTTCGAGTTCCTTTTGAGCAGGGAACTGTGTGA

Protein:

Promoter(3k):

>AM03G001230.1
TTTACTTTTTTTTCCTTCTAATTTTATTCGAGCAAAATTAGGTCGTTTAACTTAATTTAAAAATTTGATTTGGTCCATTAATCCTCTCTCTATAGTGGTCCTTTAACTTTTAAAATGACCACAGCATTAGCCCTTTTTAACTTTCTTGTTAGACTCTGTTTTTAAAATGTGTGTGGTTGTTAACTTGATGATGTGGGCGTTAAATAGTTTGTGTGTATATTCTCGTCATCGTTCGAGTCACATTATTATTTCATTATTTATTATGAATATAGAACATTTAACTTGGGTTCTTCTTCCGCAAAGAAACCCAGGAAACATCTTCAGATTCATCAAAGCATATCATTCAATACCAAACATCTTTAGATTTAACAAGAGTATAGAAGCAAATCTGAAACCAATTATGGATTTGTTCAAATCTGTAAAAATAAGAAGAAAATATTGTAGAAAGGGGGAAGATGGAGAGCAAAGAGACTGCGAGTGAAGAAGAAGGAGATGGTAGGGACATTGCTTTGGCCGTTTGCGAAGGGAAAGCAACCATAGTCATCGTGAGTGACAGAGAGAGAAGGCGTGTGGCAAAGACGGAGACGAAAATGAACCTCCATCAACTAGATTGTGGTTCTAGGATACCAAATCTAAGAAAACCCTATTTTTTGTTTTCTTTATTTAAATAAAATAAAAATACTGACTCACCTTACGATGAAAACATACACATAAGCTATTTAACGCTCATGTCATCAAGTTAACAACCATATATGCATTTTAAAAATGAGTCTAACAATAAAGGTAAAAAGGGCCAACGTTCTGATCATTTTAAATGTTAAAAGCCTAATATGGGGGAAATGTTAAAGGATGAAATCACATTTAAAATTAAGTTAAAGGGACTCGAGAGTAATTTTGCTTTTTATTTATTTTATGTGCTTGCTTACCAATGATATCTCCTTCTGATTTAATATGACTGAGAGATGAGTACCAAAACTTAATCGACTTTGCAATTAACACTAGCAATATTATATATATGACTATTTAAAATATGGATTTAATTTATATACAACGTCAGTGTAAGAGATATTTTACAATGTCCGCAAATCACGAAATGACATATTATAAAAAATGTTTGACTCTATTTCAATTACTTTAAAAGTCACCCAAACCATGTTTTTTTTTGTTGATGATGTGTAAACCTTTTTTTACAATGATGATGTATACTAATCAAACTTTTAAATATTTAAAAATATTAGTTTAACATATACACTAACTAGAAATATAATGCAACGTGTGTGATGCACTCATGTTAGGTGTTTTTTAGGGTCTATTTTGGAGGAGGACTTAGGAGGGGAGAAGTTATTTTTATTTTCAAATTTTAATGTTGCGCTAAATTGTTTCTAAAAATGAATGAAGTGTAATTGAAATGGTATATGCCAACCTATTATGTTATCCTTTCAATTTTTTAAAATCTCAAATATATACTAATATATAGTCTTAGCCCTCTAAACTCTCTCTCCCAAAATCACTTTTACAAAAAATAGTAACAACTATAATTAATTGTATTGCCCTAATTTTTTTTACAGAAATTACTGGCCTAATTTAAAAAACGTTAATATGATATTTTGATAACATCATATTTTAGCAATAAATGACTTATCTAATACATGTGCATAAAAGTATCTTAATGCAATAATAGAGATTAATCCATCGAGTCGAGTAGGATCACAATGGGTCACAAAGCTTCCCCTCAAGAGATTTAACATTGATGCATTCTCAATACTAAATTCGAAGGTAAGACATTGGTTAAGTTGCAAGAAACCCGAAATATATCATTAAAACGCTCTTGGGTATGAACAATGGAGGTTGAAGTAGAAGGTGAATCTTAATATTTAATTTTTTATTTTAAAATGTAATTGGTAATAATAAAACAATCTCAACCGTTGATTTATAAGTAAACCAAGTGTTCACCTGATATAAGTAATACTTTAAATGGAAATTTCACTAAGGGTATGTTTGAGAGGGGGTTTTGTGAGGGGAAGTGAGGGGATGACTTGAAAAAGATTTGTCTATATCTTAATATGTATTTGAGAATTTAAAAAATTAAAAGAACAAGTTGATAGATATCAATATAACGTTTTTAATCACATTTGATTTATGTATAGAGACATTTTATAACTTCCTCAATTTAAAATTGAAAAAATGTCCTCCCCTCCCAAAACCGCCTCCCAAACATACGCTAAGAAATTGTGAGGATTCAAACTACAAACATGAAACTTGGAAAGAAAGCAGCACGAGGAAGGAAGGGATAAGATGGTCATTTGCTATACGAAACGATCCCGAGTAGACAGTAGAGCTAGAGTGACGCGCCCTTAACTTCACCGCCGTTGTCATTTATGGTCCCACAAGACTCATCGCATGGGTGAACGGAACACTGAGCTGATATAGTAAATGGAAGCGAATTGTCGATTTGGCATTTTGATTTGGAAGAGATATTATTATGCATAGGCAGCATAGCACCGTGCCTCGTTGATTTTAATTCCGCGATTCGATTTTAATTATGCTCCGATATTAGAAAATAAATACACACTCCTCTACTCCAGTCTCTATTTCCAATTCATCATCTATCGGTGATTTGCATTGTAAATCTCTCAAACCCTACATTTGCGCCAATCGACCAGTTTCTCTCTTCCTCGCCATTGAAGGTACGCACGCTACTCCTTCTCCTTCTCTTTTTACTTCCAATGCGCTCGTTGTTTGTCTACGACCGTTTTTTTTTGTCTTAGGGCTTTAATTTTCATTTGCTTCTCCGGTTTCCATAGCCATTTTGCATTGTGCTGTTTTAAATCTTGAATGAATCACGATGCTAATATGCCTAGTTAGTGATAGTTAATTCGGTTGAACTTTACGGTTTTTTCTGTTATAGATGCTATCTTGATGAATGGAAAGTTGAGTTCATCTTTTTGACGGAGTGTAGGTTAATAAGGCATAAGGCAGTGAGAGATAGAGAAACTTGAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01388.24	ARID	132	217	5.10E-17

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID
Epigenetic Regulators	ARID5

Gene Ontology

GO term	Description	Category
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0016491	oxidoreductase activity	Molecular Function

InterPro

InterPro term	Description
IPR008978	HSP20-like chaperone
IPR045147	AT-rich interactive domain-containing protein 3
IPR036431	ARID DNA-binding domain superfamily
IPR001606	ARID DNA-binding domain
IPR002068	Alpha crystallin/Hsp20 domain

trEMBL

trEMBL term	Description
A0AAN9MBR9	_

SwissProt

SwissProt term	Description
ARID5_ARATH	AT-rich interactive domain-containing protein 5

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G76510	ARID/BRIGHT DNA-binding domain-containing protein
Medicago sativa L.	MsG0380017981.01.T02	_
Oryza sativa L.	LOC_Os06g41730.2	ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
Cucumis sativus L.	Csa015643	_
Glycyrrhiza uralensis Fisch.	Glyur000078s00005363.2	_
Codonopsis lanceolata	Cl_chr01_30920T	_
Arachis hypogaea L.	AH17G22010.1	AT-rich interactive domain-containing protein 5 like

Expression pattern