Gene detail

Detail information of Am03G000020.1 Annotation

Gene ID	Annotation
Am03G000020.1	FAR1-related sequence 5

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G000020.1	mRNA	Chr03	277083	280547	-

Sequences

CDS:

>Am03G000020.1
ATGACATCTTTAAATGTTGATTGGAAGCCAAGAGTTGATATGGAGTTTGACACTATAGAGGCAGCTTATCAATTTTGGCTTGTTTATAGTGCACATGTTGGCTTTGGAGTTAGAAAGCGTTACTCAAATAAGAGCAAAAAAGATGGTACTATATCATCATGTAGATTTGTTTGTACTAAGGAAGGACTGCGAACGGAGGACAAGAGAGATGCTTTTGTTGCCAGCCATCGAGCTGAGACTAGAACGGATTGCAAAGCAAGGATTTCACTTTCCCTAAAGAATGGAAAGCTTGTCATTCATGAATTTGTAGAGGAACATAACCACCCTCTGCAACATCCGGAGACAACACACATGCTAGCATCACACAGAAAAATAACTGAAGTTCAAGCATATGAGATTGATATGGCGGAGGACTCTGGATTAAGGCAGAAATCAACATTTCAACTTATGAGCACACATGCAGGACATCGAGCTAATCTTGGATATACACAGTTGGATGTAAAAAATTACCTCAAAGCAAGAAGGCAAAGGGGTATGGAATATGGTGAAGCTGGATGCCTTTCACGCTATTTTCAAAAGCAATTGTTGGAAAATCCGTCTTTCTTCCATGCACACCAGATGGATATAGATGAGCAACTAACAAATGTGTTTTGGTGTGATGCAAATATGGTGTTGGATTATGGGTATTTTGGTGATGTTATTTCGTTGGATACTACATATTGTACAAACCATGCCAATAGGCCACTTGCTCTATTTTCTGGTTTCAATCACTATAGGGGCTCAGTCATATTTGGTGCAGCATTATTATATGATGAGACAATTGAGTCATTTAAATGGTTGTTTGAGACATTCTTAGAAGCACACAACAACAAAAAACCCAAGACTATGTTTACAGACCAAAGTTCGGCCATGGCCAAGGCACTTATTGAAGTGATGCCTGAGACTCACCATGGTTTATGCACTTGGCATTTGTCGCAAAATGGAATTAAACACCTTGGAAACTTGATGAAAGGGGGAAGTTATTTTTTAAGAGATCTCAAGAAATGCATATATGACTATGACGTTGAAGCGGATTTTGAGACAGCTTGGACCGACTTGATCAACAACTATAATGTTCATGAAAATAAATGGATCAAATCAACTTATGCTTTAAAGGAAAAATGGGTTTCGTGTTACATGAACAAGGAATTCACACTTGGCATACGAAGTACACAACTTAGTGAGAGCTTGAATTCTCACTTCAAATCATCCATGAAGCCAAATCTGGATGTTATCCAGTTCTTCAAACACTTTGAGCGAGTTGTTGAGGAGAAAAGAGCCAATGAGTTGACTTGTCAGTATGAAGCTCTGCATGAGCTTCCAAAGTTAATGTGTGAGTTTTCACCAATTCTTGTACAAATGTCAAAAGTATACACACATACTTTGTTTGAATTGTTCCAGAACGAGTTTAAGTTATTTTTAGGTTTATGCATCTCAAAAAGAAACGAGTCTCAATCTTTATGTCAATATGTCATCAGTATGGGCAATCGAGAAGGATCTTGGAGAGTATCATTTGATCGTTCCTCAACCACCATATCTTGTAGTTGTAGAAAATTTGAGACATTTGGCAAACTTTGTTCCCATTCACTGAAAGTGTTTGAAGCAAATGATGTTAAGTCCATTCCTGAGAAGTATATTTTAAGAAGGTGGACAAGAGAAGCCTGTTGCGGTGCCGTGCAAGATTTGAGGGGAAAGGATATTGAAGTTGATCCAAAATTGTCTAGCACACGGAGATTTAGACAAATTGTCTCTAAATTTATCAGATTGGCGGCCGAGGTGTCTACTTCGGAGGAATACCACGAGATTGTAGATAATGGTGTGGACATCATGTGTGAGAAAATAATGGAACTTCGCTTACAAGTCGGAAAAAAAGACAGTCATAATAGTGATAACCCAACACTTATGAGTCATGATGTCACGCAACCAAAGGGATTCAAGCATCGACCTGGCTTAAAGAGGCATACTCGACAGAAGAGTTGGGTTGAGTGTCAGTCCAAGAAAAGAAAAGGAGCTCCACCTAGAGGAAAACCTCAATGTCACCAATCTGAGGCTAAAGAATTGACAAGTAGCCTCCCTGATGGACTATCTTGTTCAGCACCTCCAACTTATGAGCCCCCTCAAGCACACAATGGTCAATTTAGTCTGATGGAACTTTTGATGTCCTTCCTCCACTTCTGCACTATCTTCAATGTCATGGTATCTGCACTATCTGCACTATCAGATCCTTCTGCACTATCTTCAAACATCAGCCCCTCATTATCAGATCATTGA

Protein:

Promoter(3k):

>AM03G000020.1
AATAAAATCATCAGAGGTAGGGTATGAACGCGATCATGTTGAACAGACTCCAACCATCTTGTAGTTTGTATATCATTTTATTTTATGTCCATGTTCAAACAAGATACAAATAATTCTTTTCATAGTTCATAGAATGGACTGCTTGCCTAATACACATGCCAACTAACGTTGGGCAATGATTAAGAGTTCAATTCCAATCAAAAGAGAGACCCTACTCCAAACAAAAGAGAGAGACTTTATTACTAATTCATAAATTCATAACATACTTTCAAGATCTTGAACAAGAGACTTTATCTGCCCACATTCTTGGTCTCGACGCTTCCTTTCTTCTGAAAGAATAAAAAACAAACACAGTTTTTAATGTGACAAAATATTATACAAAATAAACAAACAAAACCAAAATGACATTTGCAAATGACCATAGGCTTACCAATCTAACTATTTAATCATTTTAATCAGGGAGAACATTTTTTTACAGAAAGGGCACGAAGGCCCAAAAAATAAACAGAAGTAACAACAAAAAAACTTCAGTAACTCCCATATCATCCCTTACAAGCATCCCATGAAAATCTCCAAGGGTTCACTCCCAAATCTTAAGATCAGTGTGCTGATCAGAACCCATTAGCCATAAAACACGTGAATATACGTCTGATCTGAGCTGTCCAGTTCCAAACAGACATGCTCTTTAGGCCCCATATTATCTCCTATAATGTCCACCCCAGCTAATTTTGTGCAGCAGACTTTAACTTCAAAATGATCTGCTGAACCCTCTATGCCAAGCTGATTGAAAACCTTCCCAAGCATCCTATACTTCTCACCTGAAGGCCGTTATCTCACAAAATTTAGTGAAACTTGTGGTTCATTAGCGCAGGCTATCCCTTATAACCCCCCACCACAGGCTGCAACCCTACATGTACAGTTGTACTGGATATTGACCTTGATCAAATTCTGCATAGGAGGGATCTGTCTCCATGTGATGATGATCCTAGGGTCAGTAACGCTTTTACAATTCTAACTACAGTACTTGTTTCCACTAGCCTGACAAAATGGTCATAATTTTTTTTTCTGTTCCCCCGACTCCACAGTAACTTCTAAGAAAGACTTAAAGGCCAAGAGTTTTGCTATAGATATGATTTATGACAGACCACTATAGCGTTGAGTGATTCATGTAGCCGACCCCGCTTAATGGAAAAAGGCTTTGTTGTTGGTGTTGTTGGTGTTGTTGTTGACTTGTTGTTGTACCCAACTCCACAGCAACCAGAATGCTTTTGCACAGCATACATTTGTTATTTTATTGCCTCTACATTCAAGTTCTGTCGAATTTATTCTCTCAGCCACTCCTAGATAAACTGACATCTTTCCTCAGGCCTAAACAACCTATTTCAGACATCAATAACCATATGACAATCCCTTAAAACATGCAAAACAGTGTTTGTTCCTATAAGCCCGTCCAATATAAATATTGTCAAGATACCCGGGCAATGTCGGATAAAGGTGAGATTGCATTCCAAAATAAAATAATAGATAGCAAACCTTCTAGGGCCACAATTTGTCCTTGTTGCAAGCTAATCTGATCAATCAGTGATCGCATTTGACTTGTGCAGTGGTTTTCAGCTTCAATCTGAAACAAGAATCAACACGACGTTGATGATCTGAATGATACTAATTATGCAAATATCGAATGTAAATTAATCTGAGAAGTGGTGGAGTTGAGTTACAGCAGCAGCGAGGCGATCGGCATATTCTGACTGTGTCGCGAAAAGTCTCATCTGAACAAGAGTAAACGACGTGTCACAATTACAATAACATGACAATGGGAAACGGAGTCAGTTAGGGTTGCGGAGACAAGCAACACCTGGATGTAGATGAAGACGCCAGCTGCAATCAAGAGAAGTAGACGAAAATCACACAAAAACTTCGCCATATGCTTTCCACCAAGTTGGGAATTACTAAGCAGGTTTCCGCGATTCACTGCACAACGGCGATTTCTATGTCTGGCGCTCACGGGCCAGTTTAGATTAAGGTTTCAGCTTCTAAATCAAAAATACACGATAGGCGCAGTAAAACAAAAAAATCATCAGTTTATTACTGATAAGGCCAAGAAGAAAATTAATGCGTGCTCGATATTTATCTAAGGCTGGCAACGAGATTATGACTCCAATCTATTCTTACCTCTATTCAGAAAATAATCAATACTGGGTAGTGTGGCACGGATACCGGGGGAAAGGATCCTCTGACATTAGCGCGGGAACTGCCTTGAACTGCCTTGTGCAGTTCCCTTGTTGCAAGTCGTTGGATGAATCCTACCATCCAGAAAAGTATCACGTGTGTCCCTCTTTTTCTTTTTTTGTTTCTTCCAAAACCAACTTCAAACGTGCCCTCTTTGTTGTCTCCGTTCCATTGCTCTCCGTTCCCGTTTTGTCACCACCACCCCATTGGCTCTCTCCGCCGCCTACCGCCGCCACCCATCATCACCGATCCAACGCCCGCCTCCGCCACTCTTCTCTGCTCTGTCACGACGTTTCGTCGTCGTACGCTGCCGTCTCACCACTCCAACGCCGCTTCCGCGTGTCGTCGTCGCTGTCACGGCCACTTGCTGCCACCGTCACTGTTGCTCGCTGCTTCGACCAATCGTAAGTGAGAAGAGAAGGAAGATGCTGGAAATAGAATGATTTTTCAAGCTATTGTTACTGCCAATTGTAATCCAAACATTGCTTGATTTTTCAAGCTATTGTTACTGCCAATTTATGAAATCACTGAATACATGAATATATTAATCCTTTGCTCACGGCCATTGTTGCTCAAGCTATTGTTTCAAGCTATTGTTGCTTGATTTTTTGCTCACGGCCATTAATCCTTCAAATAGATGAATATATTATTTAATTTTTGCCAATACATGAATACATGGATATATTATGAAATCACTGAGCACACATGAATATATTATTTAATTTTTGTATTCACTTGTTAGGTTCTTTCATTTGGAGAGTTTGATCGAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF10551.12	MULE	233	327	8.80E-25
PF03101.18	FAR1	24	111	6.30E-22

Gene family

Gene family	Subfamily
Transcription Factors Family	FAR1

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0003700	DNA-binding transcription factor activity	Molecular Function

InterPro

InterPro term	Description
IPR007527	Zinc finger, SWIM-type
IPR006564	Zinc finger, PMZ-type
IPR018289	MULE transposase domain
IPR031052	FHY3/FAR1 family
IPR004330	FAR1 DNA binding domain

trEMBL

trEMBL term	Description
A0A1S2XKF4	_

SwissProt

SwissProt term	Description
FRS5_ARATH	Protein FAR1-RELATED SEQUENCE 5

KEGG

KO	Description	Enzyme
K17604	zinc finger SWIM domain-containing protein 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G38180	FAR1-related sequence 5
Medicago sativa L.	MsG0880041924.01.T01	_
Oryza sativa L.	LOC_Os12g24870.1	SWIM zinc finger family protein, putative, expressed
Cucumis sativus L.	Csa013491	_
Glycyrrhiza uralensis Fisch.	Glyur000215s00017003.1	_
Codonopsis lanceolata	Cl_C03337_unscaffolded_00010T	_
Arachis hypogaea L.	AH03G17450.1	Protein FAR1-RELATED SEQUENCE 5 like

Expression pattern