Gene detail

Detail information of Am02G040620.1 Annotation

Gene ID	Annotation
Am02G040620.1	AP2/B3 transcription factor family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G040620.1	mRNA	Chr02	202064171	202065280	-

Sequences

CDS:

>Am02G040620.1
ATGCATGATTCTAGGCCAGCAAAAACATCTAGTAATGAAATCCATTACAATTATTGCTATGCAAAGCGAGGGAGGAATGAATATGATGATGAAGTAGAGGATGATGATGAGCAGAGGCAGATGATGAATAAGTTGAAAGGCGTTGTTTGTCAACAAAACGGGGATTGGGGTGCACAGATATACGCAAACCACCACCAAAGAATATGGTTAGGTACATTCAAATCCCAAACAGAAGCTGCCATGGCTTATGACAGCGCCACCATCAAGCTCAGAACCGGATCAGAAATCCATCAAGAGGTTCAGTTTCAAAGCCATAATTATAGCGTAGAAACAGTGCTTACCATGATTAGAAACGGCACCTACCAATCCAAATTTGCCACCTTTCAAAGTAGCAATCAATTAGGACATAATAATAATAATGTGAATGTGATTAAGCAGGGTGGTGGTGGTGAGGAAAAGTTTTGTTGCAGCCAATTACTACTTTTTAGAAAAGAATTAACACCTAGTGATGTTGGGAAACTCAATAGGCTTGTCATCCCCAAAAAACACGCAGTTACTTATTTTCCTTGCAACGGTAATAATAATAATAATGATGATGATAAGTGCATTGACATTGAGGTTGTGTTTTATGATAAGCTCATGCGATTATGGAAGTTTCGGTATTGTTATTGGAAAAGCAGCCAGAGCTATGTGTTTACTAGAGGGTGGAATCGGTTTGTGAAGGATAAGAAATTAAAAGCTAGAGATGTCATTGCATTTTATATGTGTCAACAACAACCTACTGATCATCAACATCAACATCAACATCAACATCAAGGAGTGTTTTCTCTGATTGATGTAATCTATCATCATAACAATGATAATATAATTAATGCTAATGCTGTAGCGCTAGCAGATGATGATCAGAGAAGAAGGCATTGTTTTGGAGATGGTGAACAAATTTTGGGAAACAAATTAATATGCAGTGAAGTAGAAGAAGAAGAAGAAGAAGTTGATGATGATGAAGGCCAAGATGGAATGGAAGATTTCAATGGAGTTCATTCGGAAAATAATAATAATGATAGTGGACGGAGGAGAGGTTTGAGGCTTTTTGGCGTAAGCATCAATTAA

Protein:

Promoter(3k):

>AM02G040620.1
CAACTAATGAAAACATCTCTTACTGAGATGCAATACTAGCTGAAATTAGGTTCTTGATTTGGCCACCAGGAAAAAACTATTTATAAGCTTACTCATCAAACAATTTAACTGATTTTGATTTAACGGTACTATAAGGCCTTACCGTAAAACTGATAGCTCTGTTGTGAGTCATAACTAGCAAGAAATACTGGCCAATGAGCATGTGTCCATTGGTATTTTAGCAAAAAGACTTGGTGTGTCCATTGCTCAAATTCGAAAGTTAACCAACGGGGATGCAAACGGGAGGGCCAACGGGGATGCATATTTTACCTACAATCTCATTTTCATTTTTTCTTCATTTTTACTCCATTATCAAGTTTTTCCTTTTTTTATTATATTTTACAACTTTCAACGTATTTATAATTTTAATGAAAATCATAACAGATACAGTATCACTCGTGCGTATGCACGGGTAAAATACTAGTTGGAGTGTATCTTTTGCAACCACTCTTCTCTTGTCTTCATACGGTAATACATACTCTTTAGTTGTATTATGTTGATGGAACTTGTGATGAGCTAACTTTGTTGTAGTTGGATTGTTCTTGGTGTGTAATGAACCTTGAGTAACTTTTGTATAATATTATGATGTTTGTGTTTTATTCCTTGTGTCATAATGCTTTCAATCTTGGTTTGGGAATGATCAACTAAAACAAGGTAACTTTGTGGGTACAGACATGGTTCACAAAGAGAACTCAAGGAATGATATGAATGAAAACCCTTTAAAGACATTTAAAGGAAGCACTACTTAACTCTAGACATAGGGGAGTAGTAGTTCATAAGGCAAATGTTGTAAGAACTTAATATACAGGGGTAAAACTTATTTAGAGCCTAGACATAGGAGTCTTGTAACATAACCCTGACGAAAGTGACTGAAAGGCACGCTACCAAAGCGCTACAGCGTCTACGGATTCTCAAGCGCTACAGCGCTTAACGCTACAGCGTCTAAATATTATTTGAACATTACTCTTGGGAATTTACACAACTATTGAGCTATCCAACTCACCTTTAATTACTTCAACTTAATACTGTTTTATCACAACTTATCATGTTTACAACTCTTTACCTTTACTTGTTACTAAATTCTTTTCACTAAGCTTCTAACCACTTAAACTCTTTAGATTAATTCCAATCCCTGTGGGAACGAACTTTACATATCATTATATTACTTGTTGCGATTGTGTATACTTGCACATCACCTTTTCGCACAACAAGTTTTTGGCGCCGTTGCCGGGGATTGCATTTAATTTTCATTGTTTAAGTTTTTAGTAAACTTAGTGTCTATTTTACACTGGTGTGTTGTTTCTTGTTGCTGCAGCAGGAAGCGCTACAGCGTATGCCCAGGTCTCAACCACCAGAATTTGAACCATACTCAGAACCAGAGAGAAGGTTCTGGAAACTAAGACATCTTCAAAGGCTCAGACCCTCCATGTCAGAACATAGTCATAGGACCAATTCTGGTAGAGCTACCACTCTACATGGCAGATCTAGTTCTGGTAGAGGAGGGACTGAACCAGGTGGAAGGGGTAGAGGTAGACATCAGCAGCCACCCACTCCCACCTTACATGACCAAGAGGATTGGTACAGACATCAATTCATAAATGAAGGACCTGCTCAAATGGTAAATGACCGAGATAGACCAATGAGGGACTATGCTGTGTTTGATCCACGAACCATGGAGACAAGCATAGCAAGACCAATGAGGGACTACGCTCATCCTCATGACATTAGCTTGTAATATTAATATTATGTTTCAACAAACTTATTTAATATTAAGTATTTTTTTAAAGATTTATTTAATATTAAGTTGTTAACTTATGAAATTTGTTTTAAATATTTATTGAAGCATGATATGAACTTTTAAAATTTATTTAATATATACCAAGCAAATAAAAATAAAATAGGCATGGTGTGTAATTTTAACAAATTAAGTTTTACAAGTATGAAATATATAGGTCCTGAAAATTTGGGAATTTTTTATATTTTAGTAGATATAAAATAAACACAGTTATTAATTTTACAGGGATGAAATTTATATTATATACTATATAGGTATTGAAAATTCTCGAAATAGAGACCGGGTCCGAGTCATCCGGTCCCGGTTTTGGTCATGCGGTTCAACTGTCGACCCCTCGGTCCGACCATTGACCCAATGACCCGGTACCTTCACCGAGTCGGTCACCGGTCTGAGTTTTAAAACATTGTGTATACCATATGCGTGTTGAGCTACGTGAAATGGTATAATGAGTGACAATAATTATTTGTGCATTCATATTGGTTGGTTACAATATTATTCATCCGTTTTTTTTTGTCTTTATTAATCCTAATACCAATTGATTGTTTCAATTAATCCATAATATTTAACTTGTATTTTTTATTTTGATCTAAGTGCATATGGATAATGGTTCTATGCGACATGGACGAAATTAATTGCTAAATGAACCACGGAATGACACGTGTTAAAATATTAAATAAAATTATTTTCATTTGTATTTTATATAAATATATAGATATAGATATAGATTTATTTTCAGTTAAGGATTTATGAAATAAAACTTTTGGGGTTAGGGGCTTGTTTTATGGCAACAGGGTAATAAATCTGTACAAGAATAAAACGACACTTAGTTATAAATCAGAATGTGGAAAACAAGATCCTGAGCTAGTTTTTTTCTAAATTAAGGCAAAGCCACTTCACCCTAATTTAAATATTGTTTCTTAGTAGCAGAACCACTTTGGTTTCTTAACTAATTAGTTGTTAGCAGAGCCAAATATAGTTAATTAATCCGATCCATCCATCCATCCATAAATCAATCACAGATTCCAAATCTCCTAACCATCCTTCTCTCTCTCATCACCTTAATTTGTATATAGCTGCATTGCATGCATATGTGTTGTAATTAACTAATAATCCAACACTGATTTTATCTGTTTCAAATATAGAAAGAAATAAAGAAGAAAAGAGAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02362.24	B3	162	257	1.70E-24

Gene family

Gene family	Subfamily
Transcription Factors Family	B3

Gene Ontology

GO term	Description	Category
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0006952	defense response	Biological Process

InterPro

InterPro term	Description
IPR015300	DNA-binding pseudobarrel domain superfamily
IPR016177	DNA-binding domain superfamily
IPR044800	B3 domain-containing transcription factor LEC2-like
IPR003340	B3 DNA binding domain
IPR036955	AP2/ERF domain superfamily
IPR001471	AP2/ERF domain

trEMBL

trEMBL term	Description
A0AAN9PU34	_

SwissProt

SwissProt term	Description
RAVL2_ARATH	AP2/ERF and B3 domain-containing transcription factor At1g50680

KEGG

KO	Description	Enzyme
K09287	RAV-like factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G50680	AP2/B3 transcription factor family protein
Medicago sativa L.	MsG0180006250.01.T01	_
Oryza sativa L.	LOC_Os01g49830.1	B3 DNA binding domain containing protein, expressed
Cucumis sativus L.	Csa019425	_
Glycyrrhiza uralensis Fisch.	Glyur000443s00016844.1	_
Codonopsis lanceolata	Cl_chr08_26830T	_
Arachis hypogaea L.	AH19G35710.1	AP2/ERF and B3 domain-containing transcription factor At1g50680 like

Expression pattern