Gene detail

Detail information of Am02G040240.1 Annotation

Gene ID	Annotation
Am02G040240.1	CLP-similar protein 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G040240.1	mRNA	Chr02	201126134	201138569	-

Sequences

CDS:

>Am02G040240.1
ATGCTAACCAGTAGACCAAGAGTCTCTCCTCTAGCTAACCAAGTAACCAGTAATAGATTCGTTCTGAATTCAATTCAAAGTTCAAGCTCAACGCACAGACACAGTGTTCAATCTCTCACAACACGGACTCTTTCATTCATTCCAATTCCAAACAGAGTGTTCATTTGTTCCCCAACGCCGAAAGCATCGATCGCCAAGCGAAATAACAAAATGGCGTATGGTGGTGCAGGTCCCGTGGGTGGTTCAAGTGTTACACCGGCAATTAAACAAGTGAAATTGGAAAAAGAAAGTGAGCTGAGAATAGAAGTGAGTAACGACGCACCTCTTCGCCTTCGACTACTCAACGGCACTGCTGAGATTTTCGGCACTGAACTACCCCCTGAAATCTGGCTCAATTTTCCTCCTAGACTCAAGTTTGCTGTCTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTACTACTGAAACTGATTATACTGCCGATGAGACACCAATGGTTAGTTATGTAAATGTGCATGCTATATTAGAAGGAAGAAGAAGTCGTGCAAAGGCTTCACCGTCAGATGATTCTGTATCTTCTCAAGGCCCTAGGGTAATTGTTGTAGGACCTACAGATAGTGGGAAAAGTACGTTGTCAAGGATGCTACTTAGTTGGGCAGCTAAGCAAGGATGGAAGCCCACTTATGTAGACTTGGATATTGGGCAAGGATCAATAACAATTCCGGGATGCATTGCTGCTACTCCAATTGAAATGCCCATCGATCCTGTGGAGGGGATTCCTCTTGAAATGCCTCTTGTTTACTTTTATGGGCACACAACTCCGAGTAATAATGTAGAATTGTATAAAGTGCTTGTCAAGGAGCTTGCAGGGATGCTGGAGAGACAATTTGCCGGAAATGCCGAATCCCGAGCTGCAGGAATGGTGATGAATACCATGGGATGGATAGAGGGTGTAGGCTATGATTTGCTATTGCACGCAATCCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAACTGTGCAGCATGCTAAGGGAAGTGCTTAAGGGCGAGCCTAAAGTAGATGTTGTGAAACTTCAGAGGTCGGGCGGTGTAGTATCTAGAAATGTGAAGGTCCGTCAGAAGGCCAGAAGTTATAGGATAAGGGAATACTTTTATGGCCTTGCAAATGATCTTTCTCCTCATTCTAATATTGCAAATTTCAATGACTTGTTTGTTTATCGAGTTGGTGGTGGGCCACAAGCCCCGCGCTCTGCCTTGCCCATTGGAGCTGAACCTGCTGCAGATCCAACAAGAGTTGTACCTGTGAATATAAATCGTGATTTGCTCCACATAGTGCTTGCTGTCTCATTTGCAAAGGAACCCGATGAGATCATTTCGAGCAACGTTGCTGGCTTTATCTATGTAACAGACATTGACATTCAGAGAAAGAAGTTAACATACCTCGCACCATCTGCTGGAGAGCTTCCAAGCAAGTATTTAATAATGGGATCTTTAACATGGCTTGAAACATGA

Protein:

Promoter(3k):

>AM02G040240.1
AAACTTAGCGACTTACACCAATTAATATCTTGATATAAAAAATGAAATTTATCAATCCGATCGTCGCATATCGTCGTATTATCCCTGGGATCACGTATATCAAATTTTAAAATAATTAGATACTCAGAAGTGTGTCATCTAACGGAACACATTTGCTTATATTTTAAATAACATATTAGCCATTAAAATAGAGTAGTGCGATAGACCGTCAAATAGTTTCAGGCTTTTATGAAAATTGATATATATGATCTGAGAGATAATATCATGTTATTCAACGATTGGATTGATAAATTTCATTTTATACGCGAAGATATTAATTGGTGTAAGTCACTAAGTTTGACACATCGTGTCAATATATCCCAACTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACGTACCAGTTCAATTGGTTGGAACTCTTGCAAGTAGAGTTGAAACCCATGATTTAATTTTTTGGAATATCCATACAAATAAGTGATCTGCCACCTCAGCATTGACAGAATCAAATGCAGTTAGCGAGAGTCATGGTAGTTCATTTTGAAAGGCAGTTCAATCATTTTAAGGCTCCATGTAAGTGCCACGTGTACCTACCACGTCAGCACTACATGTTACCGACGCATAAGTAGTACTACCATGTTGGCATCTTTGTCAGAAAATGGATGGTAAATTGACATTTGGACCAAAATTGCATAATCGTCAAAATTGGGGGAACATAATTGCGAGAAAAAAATGAGGAATAGGTAGACTAAAAGTGCAGTTAAGCCAACTTTTTTCATTGAATACTGAACCCCTTCACAGTTCGAGTGTGAGCTAAAGGTTATTTTTTTTGCCATGAGAAAATATAATTTCGTCTACCTTTTATTGGACTTTCAATCCTCACCCATCGAGGAGGTCGACAAGAGTTAGTTGTCGGTTGAGACCCAAACAATTATGAACTATCTTAAGCAGTTGCCGACTTTCAAGCATTACGACATCAAGAGGTCGGGCACTAGAGGGAGAGGGTTTTAAGAAGGTTTTCATATGCAAGTTTTTGTTGTTGAAGTCGACCTCTCCTTACTTTTGTTAAATTGATCATTTACTCGTCTTTTTTTTCCTTCTTTTGCATTATTGTTGATGAAATGGCCCCATGAAGACCTTGAAAGAATGGGCGAGCTACTAGCCCTTACTAAGAAAGATGGGTCACTAAAGCCATCGAGGGGGCGATCTCATCTACTAGTGAGATGGCGATCTCACCTACTAGTGGGAAGGCAATAACTCCCCCGCCTGCTCTCAAGGTATATCCAAAAGAAGTGACCTCAAGATCATCCATATGGTCTGACTTCCTCCGCTCTTCCTTCTAAAGCTCAAAAAGGCCCCCCCAAAGGATTCTTCTTCTATTCCTTATTGGGGCCAGTGGCACGAGTACCTGAAGGACTTCATTCAAGAAGGGGAAAATGTTGTCAATTATTTGTGGAATACGGGCATCGACATTTTAAATCATGTTGACCAAAATCATGTATCAGGCTGATGAACTTGGCGAGCACAAACTTTACAATACTTTAGGTCTTTTCTGGGTTGTGTTTTGCGGCCATTGCACAAATTCTCTTATATCAAGTCAGATATCAGAAAATTAACGTCGAGCGTTATTACCAATTTTGCCTTGCAGGAGACTAACTAGAAACTTTAAGACCTTTTGAAGTCTCATGATGAAGCGGTCAATGGGAGCTTGGTGCTGAACACACCGTTGTTAAGAAGTATAAGGCCTGTAAGGATTGTTTTGATAACGTTGTTACCCAGATCAGAGCATTAGCCCCCTGACCTTGATATTTTTAAACTTCAGTTCAAGAAGGTTGTGAAGGATGGGAAGGAGGAGGGGGAGGATGAACATAAGTTATGGAGGTCGAGGCCAAACATGGCGTGGAAAGAGGCACCAAGGAGGTTCATAATGTTTCACATCTTCGCGTTTTGGTGGTTGACTTTGGCGAAGACTATGACGAGCTGACCTTCGAAGATTAGGGGATGTCCATGTTTAACTATTAATATCGAGAGAGTGAGAGACTAACATGACACTACTAGAAAGTTTCATCAACTAAGAATGTGTTTGATTAAAATTGTGTTAGCACAAGAATTTAAAACACATGGACTATGTTTGACAAGGACAATCAACTAGGATATAGTGAATAAACTCTTTGCATTGTATTTGATGTGATTAGCTTATAACATTTTTTTTACTATTTTATATAAATTTTTGAAACTAAACTTTATATTGCGTTTAAGGTTATAATTTATATGTTGTCAAAAAAAGTTTATGATTTATAGCGTTTCAATTATTTTGGAAGCTTACTCTTTGATTACTTAATTGGTTTAAATATCATTTTAGTCACTGCAAATATAATTAATTTGATTTTAGTCTCGTAAAATATATTTTTCCTTGATTTGTGTCCCTATAATTTTCAAAATAATCATTTTTAGTCCCTAAAGTGTTTTTTTGCATTTAAAAAGCTGATGTGGCTTTTTTTATTACATGACGAGGGACTAAAATAAAAAAATTGCTACATTTTTGAAAATTGTAAGGAACTAATTTTTTTTTTTAGATTAACTAAAGTGATATTTGAACCTATTTAATTTAGTGGCCTTTGCTATGAGATTAACAAAATTTCATGAATTTTTTTTTTGAAGCAAATAAACTTAAACCATTTCATTAATCAAAATGTTCGAAATACAAAGCGGTATTAAATCATGAACGTGGTTACTAGCAAAGGATTGAGTAGCCCGAGCTAGAGTATGAAGAACAGAATTGGCTTGTCGCCGAATAAAATTTCATGAATTATTATTGATTTTTATTTTTGACATTGCATAAATTAAACTCTTTAGACTATCAAAAATAATAATTACCTTACCTTGTTTCTGTCAAACAAGGCGAGAGAGCTGGGTTTTGTGCCGGTTGGATTTTCAAAATCGATCGATATTGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF16575.8	CLP1_P	203	391	4.10E-67
PF06807.17	Clp1	396	507	5.50E-33
PF16573.8	CLP1_N	92	183	3.40E-32

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	Biological Process
GO:0005524	ATP binding	Molecular Function
GO:0004650	polygalacturonase activity	Molecular Function
GO:0005975	carbohydrate metabolic process	Biological Process
GO:0008270	zinc ion binding	Molecular Function

InterPro

InterPro term	Description
IPR010655	Pre-mRNA cleavage complex subunit Clp1, C-terminal
IPR045116	Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3
IPR032319	Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain
IPR028606	Polyribonucleotide 5-hydroxyl-kinase Clp1
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR038239	Clp1, N-terminal beta-sandwich domain superfamily
IPR032324	Clp1, N-terminal beta-sandwich domain
IPR038238	Clp1, C-terminal domain superfamily

trEMBL

trEMBL term	Description
A0A1S3E4H1	_

SwissProt

SwissProt term	Description
CLP1_ARATH	Protein CLP1 homolog

KEGG

KO	Description	Enzyme
K14399	polyribonucleotide 5'-hydroxyl-kinase	[EC: 2.7.1.78]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G04680	CLP-similar protein 3
Medicago sativa L.	MsG0480022929.01.T01	_
Oryza sativa L.	LOC_Os02g12570.1	pre-mRNA cleavage complex II protein Clp1, putative, expressed
Cucumis sativus L.	Csa018950	_
Glycyrrhiza uralensis Fisch.	Glyur001207s00025858.1	_
Codonopsis lanceolata	Cl_chr03_40690T	_
Arachis hypogaea L.	AH18G18450.1	Protein CLP1 homolog like

Expression pattern