Gene detail

Detail information of Am02G039980.1 Annotation

Gene ID	Annotation
Am02G039980.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G039980.1	mRNA	Chr02	200325069	200331505	+

Sequences

CDS:

>Am02G039980.1
ATGTATCTATACAGTCTCACTCTTCAGCGACCCACCGGCATCGTCTGCGCCATCAACGGAAACTTCTCCGGCGGTAAGGTTCAAGAAATTGTCGTCGCCAGAGGCAAGGTTCTCGATCTCCTTCGTCCCGATGACAACGGTCGAATCCAAACCATTCTCTCCGTTGAAATCTTCGGCGCCATTAGATCCTTAGCTCAGTTTCGCCTCACTGGTGCTCAAAAGGATTTCATCGTCGTCGGTTCCGACTCCGGCAGAATCGTGATTCTCGACTACAACAAAGAGAAAAACGTCTTCGATAAAATTCACCAAGAAACCTTTGGTAAATCCGGTTGCCGCCGAATTGTTCCAGGTCAGTACCTAGCTATAGATCCTAAAGGTAGAGCTGTTATGATTGGTGCTTGTGAGAAGCAGAAGCTTGTTTATGTCTTGAATAGAGATACTGCTGCTAGGTTAACTATATCTTCTCCTTTAGAAGCACATAAATCACACACTCTTGTATATTCTATTTGTGGCGTTGATTGTGGCTTTGAGAATCCTATTTTCGCTGCTATAGAGTTGGATTACTCTGAGGCTGATCTGGATTCTACTGGCCAGGCTGCTTCTGAAGCACAGAAGCATTTGATTTTCTATGAGCTTGATTTGGGTCTTAACCATGTTTCTAGGAAGTGGTCTGATCAGGTTGATAATGGTGCCAATTTGCTTGTCACTGTTCCTGGTGGTGCTGATGGTCCTAGTGGAGTCCTTGTTTGTGCTGAGAATTTTGTTATTTATAAGAATCAGGGGCAACAAGATGTTAGGGCTGTCATTCCTCGGCGTGCTGACTTGCCTGCTGAGCGTGGTGTTCTCATTGTTTCTGCTGCCATGCATAAATTGAAGAACATGTTCTTCTTCCTTCTGCAGACTGAGTATGGGGATATCTTTAAGGTAACTTTGGAGCATGAAGGTGACCGGGTCTCTGAATTGAAGATTAAGTATTTTGATACTATTCCTGTTACTGCTTCGATGTGTGTGCTCAAGTCGGGTTTTTTGTTTGCGGCTTCTGAGTTTGGAAATCATGCTCTGTATCAGTTTAAGGCGATAGGGGATGATGATGATGTCGAGGCCTCATCGGCTACGCTGATGGAAACTGAAGAGGGTTTTCAGCCTGTGTTTTTCCAGCCCAGGAGACTGAAAAACCTTGTCAGGATTGATCAGGTTGAGAGTTTGATGTCAATTATGGATATGAAGGTCAGTAATCTCTTTGAAGAGGAGACTCCTCAAATTTACACTCTTTGTGGGCGTGGTCCTCGATCGTCCTTGAGAATCTTGAGAACTGGTTTAGCTGTTAGTGAGATGGCAGTTTCCAAGCTTCCTGGTATACCTAGTGCAGTTTGGACAGTGAAGAAAAATATTATTGATGAGTTTGATGCGTACATCGTTGTGTCGTTCACAAATGCTACACTTGTGCTTTCCATTGGTGAGACGGTTGAAGAAGTCAGTGACAGTGGGTTTCTTGACACTACTCCCTCCCTTGCTGTTTCTTTGATAGGCGAGGATTCTCTCATGCAGGTTCATCCAAATGGTATTAGGCATATTAGGGAGGATGGCCGTATTAATGAGTGGAGAACTCCTGGAAAGAGGACAATTGCAAAAGTTGGATCAAATAGACTTCAAGTGGTTATTGCACTGAGTGGAGGGGAGCTTATATATTTTGAAGTGGATGTGACTGGTCAGTTGATGGAGGTGGAGAAACACGAAATGTCTGGAGATGTTGCTTGTCTGGACATTGCTCCAGTGCCCGAAGGCAGACAAAGATCCCGTTTTCTTGCAGTTGGCTCATTTGACAAGACAATCCGAATCTTATCTCTGGATCCTGATGATTGTTTCCAGTGTCTAGGTATACAGAGTGTTTCTTCAGCTCCAGAATCTCTTCTCTTCCTTGAAGTTCAAGCTTCTGTTGGTGGTGAGGATGGTGCAGATCATCCTGCCAGCCTTTTCCTGAATGCCGGTTTGCAGAATGGTGTCTTGTTTAGAGTTGTAGTGGATATGGTCACAGGACTGCTTTCTGATCCTCGTTCCCGATTCTTAGGTTTGAGAGCCCCAAAGCTGTTTCCGATTGTTGTAAGAGGCAAGCGTGCCATGCTTTGCTTGTCAAGCCGACCTTGGCTCGGTTATATTCACCAAGGCCATTTCCTTTTAACTCCCCTTTCATATGAAACCCTTGAATTTGCTGCCTCTTTTTCATCTGACCAATGTGTGGAAGGTGTAGTTGCTGTTGCTGGTGAGGCGTTGAGGATTTTTACCATTGAAAGATTAGGAGAAACGTTTAACGAAACTGTTATTCCACTTCGATACACGCCGAGGAAATTTGTGCTGCAACCCAAACGGAAGCTTTTGGTAGTGATTGAGAGTGATCAGGGAGCATTTACTGCAGAAGAGCGTGAAACTGCAAGGAAAGAGTGTTTTGAGGCTGGTCAAGCTGGGGAAAATGGGACTGGAAGTGCAGACCAAATGGAGAATGGTGGAGAGGATGAGGATAAAGATGATACCCTCTCTGACGAGCATTATGGTTATCCAAAAGCTGAATCAGATAAGTGGGTTTCCTGCATCAGAGTTCTTGATCCAAAGACAGGAGACACAACATGTCTTTTGGAGCTTCAGGAGAACGAGGCTGCTTTCAGCATATGCACAGTAAACTTTCATGATAAGGAATACGGAACTCTTTTAGCTGTTGGCACAGCAAAGGGACTGCAATTTTCGCCCAAAAAGAGTTTAACTGCTGGATTTATTCATATATATAGGTTTCTAGAGGATGGAAGGTCTCTTGAACTTCTTCATAAAACTCAGGTTGAAGGTGTTCCTCTTGCTCTATGTCAGTTTCAAGGAAGATTACTTGCAGGAATAGGACCTGTGTTGAGGCTATATGATTTGGGAAAAAGAAGATTGTTGAGAAAATGTGAGAATAAGCTATTCCCCAATACAATTATCTCTATTCATACCTACCGTGATCGACTTTACGTGGGTGACATCCAAGAGTCTTTCCATTACTGCAAGTATAGGCGGGACGAAAACCAACTTTACATATTTGCTGATGATTGCGTTCCAAGATGGCTTACTGCATCATACCACATAGATTTTGACACCATGGCAGGTGCAGACAAGTTTGGAAATATCTATTTTGTGCGGTTGCCACAGGATGTTTCTGACGAGATAGAAGAAGATCCTACTGGTGGGAGGATCAAGTGGGAGCAGGGAAAGCTGAATGGAGCCCCCAATAAGGTGGAAGAAATTGTACAATATCATGTCGGTGATGTGGTCACGTGCTTGCAAAAGGCATCTCTTATACCAGGTGGTGGAGAGTGCCTTCTATACGGAACAGTTATGGGAAGTGTTGGGGCATTACATGCTTTTACTTCACGGGATGACGTTGATTTCTTTTCTCACTTGGAGATGCATATGAGGCAGGACAATCCACCTTTGTGTGGAAGAGACCACATGGCCTATAGATCTGCCTACTTTCCTGTTAAGGATGTGATTGATGGGGACCTATGTGAGCAATATCCATCATTGCCGATGGATTTGCAGAGAAAAATTGCTGATGAATTGGACAGGACGCCTGGAGAGATACTGAAGAAACTTGAGGAAATACGAAATAAGATTATTTAA

Protein:

>Am02G039980.1
MYLYSLTLQRPTGIVCAINGNFSGGKVQEIVVARGKVLDLLRPDDNGRIQTILSVEIFGAIRSLAQFRLTGAQKDFIVVGSDSGRIVILDYNKEKNVFDKIHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTLVYSICGVDCGFENPIFAAIELDYSEADLDSTGQAASEAQKHLIFYELDLGLNHVSRKWSDQVDNGANLLVTVPGGADGPSGVLVCAENFVIYKNQGQQDVRAVIPRRADLPAERGVLIVSAAMHKLKNMFFFLLQTEYGDIFKVTLEHEGDRVSELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHALYQFKAIGDDDDVEASSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMSIMDMKVSNLFEEETPQIYTLCGRGPRSSLRILRTGLAVSEMAVSKLPGIPSAVWTVKKNIIDEFDAYIVVSFTNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGEDSLMQVHPNGIRHIREDGRINEWRTPGKRTIAKVGSNRLQVVIALSGGELIYFEVDVTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSFDKTIRILSLDPDDCFQCLGIQSVSSAPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRVVVDMVTGLLSDPRSRFLGLRAPKLFPIVVRGKRAMLCLSSRPWLGYIHQGHFLLTPLSYETLEFAASFSSDQCVEGVVAVAGEALRIFTIERLGETFNETVIPLRYTPRKFVLQPKRKLLVVIESDQGAFTAEERETARKECFEAGQAGENGTGSADQMENGGEDEDKDDTLSDEHYGYPKAESDKWVSCIRVLDPKTGDTTCLLELQENEAAFSICTVNFHDKEYGTLLAVGTAKGLQFSPKKSLTAGFIHIYRFLEDGRSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKRRLLRKCENKLFPNTIISIHTYRDRLYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGAPNKVEEIVQYHVGDVVTCLQKASLIPGGGECLLYGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDNPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSLPMDLQRKIADELDRTPGEILKKLEEIRNKII*

Promoter(3k):

>AM02G039980.1
ACGAGAGAGGAGAGGGCTGTGAGAGAGGAGATGAACAGTGCGCGCCTACGTGGCAGTCTACGTGGACTGCTATAAGTCAGTCAAAATTGACTTTCAATTTTGACCAAATTAAGAGGGGGATCACAATTCTCTAATTGGGAAAATAGGGGGATCAAATTCGTCAAATTAAACCTTGAGGGACCAAAATCGTGAATTGGTAAAAATAGGGGGACCAAAACTGTAATTAAGCCTAATTGCTTTCTGTTTTTCCTCTACCGTTTTATTGATATCTATCACATAATTTTTGTTATGAATGTAACATTTTTCAATATTTACCAATCCATATATATTAAGACAACATCCAATCCATATATATTAAGTAGAATTTCAATACTGTATAAAACACAATCAATCCACTAACTAATAAAATACACATCAAACAAGAGAAGTTTTGAACTTGCTACTTTTCCTTCAACAGTACTACTAGACCCAACTCTATCGACAACCTTAACAACAGCATACCCATTAGCACCATAATACTTTCCAGTACCTCCAATAACAGCAACATGTGACTCAAAAACCTCACTCCTATAAACTCCAAAAAATCTCACTCCATCATCTTCATACTCACCACCCTTCACAAAACTAGCTGTCATAGCCACCATATAGCTACTTCCATCTTCAGAGCTAGCAACATAAACCCCTTGTGCTTTTCCAACTTTCTTTATCTCATCACCTTCACCTTCACCTTCAAGTAACTCCTCATCATCTATTGATGTTACTAATCCTAACTGAAGTTCTTGAAGTGATGCTCTAGCTGGAAAAGAGAAACCAATGCTAGAAAGGTCAAGTGTTTCAGTGGAAGATTGAGGTATTGGAATCCCTTTCTTTGGAGGGAAAATTCCTAGTGGTTTTGAGAAAGGGATTTGATGACCAGTGACTTTTGTAGTGGTAGGCTTATTTGAAGGCTCATGTGTAGCATTATTGAGTATATGTTGCATTAAAAATGTTATTCTGTGATGGCTATGGTTGTGGTTAGGAGTTGGATTACCAAGAGTTCTAGCTGATGAAGACTTGTTTATTATGAACAAAAGTAACATAGCTATTGCAAGATGAGAAGGGCATTGCTTAGCCATTGTTGCATGCATAGCTTCTCTTGGCATTAGTTTGTATGCGGTTTTATATAACTAAGTGTGGTGGTTGGAATAATCTATGGTCAATTATCAAATGGTTATAAATATTTCTGATTTATATTTATATATTACTTTATAGTAGTAGTGTTTCAGATGGCTTGCATCATCAAACAAATTTTGTCACTAAAAATATCATCAAACAAGTTTTGAAATAATTTTAATTGATTTTTTTTATGTAAAACTATGATTCTTTGAATGTTATCAAGATTAGGTTGTGCATGAATGGAACAAACTCACCTAAGACACGATTCAAATTTTTTCAGGAAGCCGTCGTATAGTGCTATAGGTGCCAAGAAAATAGTAATTAATTATAAAGAAATTAGGCTAAAGTACTCCCGGGGTCCCTTATCTTTATTTAAAGTAACGAATTAGTTCTTTATGCTTTTTTGTCCCAAATAAGTCTTTTATCTTTCAGATTTTTGACACATAAATCCTTTTCCGTTAACAGTGCTGATTTATGTGTCAAAAAAAAGGATTTATGTGTTAAAAATTTGAAACATAAAGGACTGATTTGGGACAGAAAAGGATTTATGTGTCAAAAATTTAAAACATAAAGGACTGATTTGGGACAAAAAAAAGATAAAGGACCAAATCGTTACTTTAAATAAAGATAAGGGACCCCGGGAGCACTTTAGCCAAGAAATTATTGACCTTAATTAACTCTAAAGGGTAATCCAGCAAATCTTTTGAGGAATCAAATAGTAGTAGTGTTTGGATTGGCGGTGGACCTCCCCAAACTCACGAAAGCAAATCGCGGCAACGTAGAAGCTTGGAATTGTAGCTTCTCAAAAACCACGGTAAAATGCCATGGGACGCACGGCGGCAGTGACCAAACGCGTTCCCAAGCACACACGTAGTTTACTAATCTGGCGACATAGGATAAAAAGTAAATAGTTGCCATTTGTGCAGGCAAAATCGATGATATCTCTTCTTTTGGTTGGAGTCTGTACTAATATAGAAGTATGAAATGACAAATAAAGATAACACAATTATACGGTCGAGTTTGAACTCTAAAGCAGACGTTTCTATGTAGTTGAAATTGTCAATGCAACCACCGAAAAAAGACACTAATATATTATATATTAATGTAATGTAATCTCATATTGACATTTTTCCTTTTTAATTGTCATTTTTAAGGTTATTTGCACGTTAAAAACCAATAAATTTTATTACTTTTGATGTATTTAGCTTTTTATCCTTAATTATTTATTTTCTCATTCCACCTATTTCTTTCTCTTTGCATATTTTTTAATAAAATAAATAGTTAATGTTACATTAAACTTTAAATAGAAACAATTCTTTCTTCAAAAATGATAGCTAAAAGGGAATGAAGAGAGTATTTATTAATCAATATTTAATTTTGAAGATGGGATACACCAAATGCTAAATTGAAATCGGAAATTGATATTTTTTTAACAAGAGTATTTTTTTTACAGGTAATTAAGTTAAAAATTGATTTTTTTAAAAAAATGGAAATTAGCTTTTTTTTTGACAAAACATTGGAAATTAAGCTAAAAATCAAATAAAATAATTGTTGTAAAAAAAAAAATTCTAATAACAAATTGTGCCCAAGGCAAGACAATTTCAACAACAAGATTCAGCAAGCGGCAAGACAAGAAAGAGATGAAGGCACTTAATAAACACACTGAAAATAAAAAGTAGTAAAAACTAAAAATAATAGTGATGTATAAATATTAAATTCACTCCCGCTCCGCTCACAGTGACACTAGTACTGAGAATCTTATGTTAAACTGAAAAACAACTCTAAAACCCTAACCCCCTTTTTCCCCTTCGACTGACTCGGTAGCCATAGCCATAACCATAAGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF10433.12	MMS1_N	75	589	1.10E-168
PF03178.18	CPSF_A	861	1180	3.30E-92

Gene family

Gene family	Subfamily
Ubiquitin Family	DDB1
Ubiquitin Family	DDB1

Gene Ontology

GO term	Description	Category
GO:0030620	U2 snRNA binding	Molecular Function
GO:0005686	U2 snRNP	Cellular Component
GO:0000398	mRNA splicing, via spliceosome	Biological Process

InterPro

InterPro term	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR011044	Quinoprotein amine dehydrogenase, beta chain-like
IPR018846	Cleavage/polyadenylation specificity factor, A subunit, N-terminal
IPR004871	Cleavage/polyadenylation specificity factor, A subunit, C-terminal

trEMBL

trEMBL term	Description
A0A9D5AB44	_

SwissProt

SwissProt term	Description
S130B_ARATH	Spliceosome-associated protein 130 B

KEGG

KO	Description	Enzyme
K12830	splicing factor 3B subunit 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G55220	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Medicago sativa L.	MsG0880046827.01.T01	_
Oryza sativa L.	LOC_Os02g04480.1	cleavage and polyadenylation specificity factor, putative, expressed
Cucumis sativus L.	Csa017729	_
Glycyrrhiza uralensis Fisch.	Glyur000573s00021778.1	_
Codonopsis lanceolata	Cl_chr07_22740T	_
Arachis hypogaea L.	AH19G36490.1	Splicing factor 3B subunit 3 like

Expression pattern