Gene detail

Detail information of Am02G039920.1 Annotation

Gene ID	Annotation
Am02G039920.1	beta-hexosaminidase 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G039920.1	mRNA	Chr02	200180626	200185619	-

Sequences

CDS:

>Am02G039920.1
ATGGGTTGGGATTGGTGGCGCACAGTTCCCAGAAGGCTCACAGTAGTACTATTCATCACTGCTTCTACATTCTTATTTTCTGAAGCTCTCGGTGTCAAAACCTCACAACCATTCATTTGGCCTCTACCCGCTAAATTCTCATTCGGCAACTACTCTCTTTCTGTTGATCCAGCACTTTCCCTCTCCGGCAATGGTGCTTCCTCCGCCATTCTCCGAGCTGCTTTTGACAGATACAAAGTTATAGTCTTCAAGAATGTTGGCTTTCTCAGAACAGTTAGGGAAATTGCTTATGATGTTACCAAATTGAATCTCATTCTTCATTCCAATAGTGAGGAGCTTCAACTTGGAGTTGATGAAAGCTACAATTTGTTCGTTTCAAATGCCAATAACGTGCATTCCGTCACGATTGAGGCAAATACTGTTTTTGGTGCATTGCGTGGATTGGAGACGTTCAGCCAACTGTGTTCTTTTGATTATACAACTAAAACGGTACAAATATACAAGGCTCCTTGGTCCATCCGAGATAAACCGAGATTTCCATTTCGTGGGCTCATGTTGGATACATCAAGGCACTATTTACCAATTGATGTAATTAAGCAGATAATTGAAGCCATGTCCTATGCTAAACTTAATGTTTTGCATTGGCACATCATAGACAGGGAATCATTTCCTCTTGAAGTACCCACATATCCGAATTTGTGGAAAGGTTCGTACTCAAAGTGGGAACGTTACACAGGAGAGGATGCATATGAAATTGTCAACTTTTCCAAAATGAGAGGCATAAATGTGATGGCAGAGGTGGATGTCCCTGGTCATGGAGAATCGTGGGGTAAAGGATATCCTGATCTTTGGCCATCACCCTCCTGTAGGGAGCCACTAGATGTTTCAAAGAAGTTTACTTTTGATGTCCTTTCTGGTATTCTAAGAGATATGAGAAAAATATTCCCATTTGAACTATTTCACTTGGGTGGTGATGAAGTTCTTACAGATTGCTGGACCAATACTTCTCATGTGAATGAATGGCTTCGGAGACACAACATGACAGCTAAAGATGCTTATCAATATTTTGTACTGAAGGCCCAAAACATAGCTCTTTTGAATAATTGGAGCCCTGTAAACTGGGAGGAAACCTTCAATACATTTCCAAATAAGCTCCATCCTCGGACTGTAGTGCATAACTGGTTGGGACCTGGGGTATGTCCAAAGGTTGTTGCAAAAGGCTTCAGGTGTATTTTCAGTAACCAAGGTACCTGGTATCTCGACCATCTGGATGTACCTTGGGATGTTGTCTATAATGCTGAGCCACTAGAAGGAATACAAAAAGCTTCAGAACAAAAACTTGTACTTGGAGGAGAAGTTTGCATGTGGGGTGAGACAGCTGATGCATCAGACGTTCAACAAACAATATGGCCTCGAGCTGCAGCAGCAGCAGAGCGTTTGTGGAGTCAAAGGCATCATACCTCAGCAGGAAATAGTAACTTAACTGCATTGCCCAGGTTGCAATACTTCAGATGTCTCCTGAATAGGCGAGGGGTTCCAGCGGCTCCTGTCACAAATTTTTATGCTAGAACTGCTCCTGATGGTCCAGGCTCATGCTTTGCACAATAA

Protein:

Promoter(3k):

>AM02G039920.1
TACATCTTAGCTGCTATTGTTTTATACTTTTGTGGTTTATTTTTCTTTGGGTTCTACTTGAGTCTTTGATTTATTTTAAGATGTTGCCTAAAAAACATTTATTTGGTAGTGAAAAACGAAAAAGAAAAAAAAGGAAATTGAACAAAATGAAGAGCCAATAATATCACAATAATGAGCTATTGATAAATTTGTTTTTAAAAAGGTAGATATCCAAGAAAATTTGGATAACAACGACAATGAAAATTTTGATCAGTCAAACGAAAATTTGGATTATGAAAATAAAAATAACAAAAATGAAAATGAAGAAAATGATGAAATTTGTAAAACTATTATTATGTATTAAGGCATATTACGTTAAATAAAATAAGTTTTTTTGTCTTTTATTGAAATATTTTCAAATTAAAAAATAGTTATGTAAATGGGTCATTTTCTCACGATTTTCCTAGGGCACATAAAATGTCAGAAACGGGGCTGGTTAGGAGGTGGGGGAAATATTTGTTTCCTGGGGCATCCTCCTTCATGTCTCATAGCTCGCCAACTGAACTACCTTCCTGGGACAATTTTTTTGTTTACAAGTCAATGCAAATTAACCATATATTACTAATATTTTTCTTCAAATTTGATATTCCTTTATATGGTATTATAAAGTATATTTTTTATTTATCATAATTTTTAATAGAGACTAGTTCACGCGGTTCAATAAGTGATCATTCGGTCCGACCATTGACTTAGTGACCCACTACCGCGACGACAGAGTCAATAACCGATTTGGTTTTGATAACACTAGTTTTAAAACACAAGTATCATTCCCGATCCTAAATGTGTCAAAAAAATTCCCGATCTCAAAAAAATGGCATGTTTGTAGAAAACTTTTTTTCTTTAAAAAAATAGTTTTAGAGAAAAGTATTAATGGTCGAAGTCGAAGTAGTGTTTTAAAAACCGGCTCGGCCCGGCCGGTCGGACCGGTCGAACCGGGAACCGGGGGGGTAACCGAGTCGGTCAAGGTTTTGGATCGGCCATGCAGCAAACCAGTGGGAACCGGTGTGACTCGGCCAGTTTTTGGATAAACCGGTGACCCGGTTCGAACCGGACCGGGTTGTGCATTTTTTTTATTTTATAGGTAAGTATGTTTCCCATTGACATATGCCTTGCTTTTATATCTCATTCTCCTCCCTGTTCCGTTCATTCTATGCAATGTGCGACTATTTGTAAACTACTTGAAACAAAAGAGACTAAAAAAAAACCCTCAACAAAATGCCATTAGTGGGAACCCCTGACCTGTTGAAAGCAAATGCTGAGCGCTACCATGAGGCTACCAATCTTATTGAGGATATTATTTATTTCAAATATATATAATTGATACCTCTTTTCCAAAAAGTCAAGTACGCTCATCCTCATGGCATTAGCTTGTAATATTAATATTATGTTTCAACAAACTTATTTAATATTAAGTATTTTTTTAAAGATTTATTTAATATTAAGTTGTTAACTTATGAAATTTGTCCTAAATATTTATTGAAGCATGATATGAACTTTTAAAATTTATTTAATATATACCAAGCAAATAAAAATAAAATAGGCATGGTGTGTAATTTTAGCAAATTAAGTTTTACAAGTATGAAATATATAGGTCCTGAAAATTTGGGAATTTTTATATTTTAGTAGATATAAAATAAACATAGTTATTAATTTTACAGGGACGAAATTTATATTATATACTATATAGGCATTGAAAATTCTCGAAATAGAGACCGGGTCTGAGTCATCCGATCCCGGTTTTGGTCATGCGGTTCAACTGTCGACCCCTCGGTCCGACCATTGACCCAGTGACCCGGTACCTTCACCGAGTCGGTCACCGATCCGAGTTTTAAAACATTGGGTCGAACTAATGTTTCCAAAACTCCTTTCCTAACATATTGTTAGGTCACCTACCATACTCACTCAATAATCTTAAAAACAAAAACAAAAAGTTAAGAAGTAGAGGTAGATATATAATTTGGTAGACTGAAATATAAATAAATATAAATTAATCTATATGTAGTTAATATAATAACTTTCAAATTAATTATCAATTTTTTTAGTTATTATGTTATTAGTGTGTAGTATATACCGTCAGGAATCTAGTTGGCAGATGTATATCCAACTTTATCCATGTGTGTGGTTCTCCCCCTCCTATTAATGTTTTTGCCACACATAAGATTCAAACCTGAGACCTTAAAGTAGGATCTGAGCTCAATTATCGTTCGGACCAACCATAGTTGGTAAATTAATTATCAATTAATAAATATATTTTCGTTTTTCATGAAATTAAGAAAATTAAATATATTTGACTATTGTCTTTAATAAATGTAAAATTGTCCTTGATGATTGCCTTGGCAATTTTAGCGACATAGGGACGGCGGCTCCGGGGTTCGAACCTGGGTGTGGCCAGTTATAGTGTGTGCGCGTGGTGTTTATTTGCCAATTTATCTAAGTAAACCAAAAAAAGTAAATATAAAATTAATTATTTTTTCATAATAAAAAGAAGTAATATAATATTATCATGGTTTGATGTTGCATAATAGTGACAGAATTGGATCACGGTCTAATTAATTTTTTTTTGACAAAATGGTTTAATTAGTTTATAGAAATACTATAATTCAACCAAGACTGAATTAAATGACTAATAAATGAGTAATAAAAAATAATAAATTCAGTCAAAAAATAAAAAAAAATAAATTTGAGGGAAAAGTATCCGTGTAGTATATTTAAATTCTTAGCCTCAAAACCACTCCAAATTATAATCACGTTTACGTTCACGCTCTCTCTCTCCCCGGAATATTTGTGTTGGAAAATATTAGTTTTCGGGGTTTGAACCTGAAGCTCTTCTTACAACTTTGTAACTCCTTCGACTAATCCAAATTATAATCACGTTTACGTTCACGTTCTCTCTTTCTCTCTCTCCAGAATATCTGTGTGCGCTAGTGTGTAGTGTTCTTCTCACAAAGAAAAGAAGCATCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00728.25	Glyco_hydro_20	179	483	6.30E-75
PF14845.9	Glycohydro_20b2	39	154	1.50E-19

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH20

Gene Ontology

GO term	Description	Category
GO:0004563	beta-N-acetylhexosaminidase activity	Molecular Function
GO:0005975	carbohydrate metabolic process	Biological Process
GO:0016020	membrane	Cellular Component
GO:0030203	glycosaminoglycan metabolic process	Biological Process
GO:0004650	polygalacturonase activity	Molecular Function

InterPro

InterPro term	Description
IPR017853	Glycoside hydrolase superfamily
IPR015883	Glycoside hydrolase family 20, catalytic domain
IPR029018	Beta-hexosaminidase-like, domain 2
IPR029019	Beta-hexosaminidase, eukaryotic type, N-terminal
IPR025705	Beta-hexosaminidase

trEMBL

trEMBL term	Description
A0A072W2M8	_

SwissProt

SwissProt term	Description
HEXO1_ARATH	Beta-hexosaminidase 1

KEGG

KO	Description	Enzyme
K12373	hexosaminidase	[EC: 3.2.1.52]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G55260	beta-hexosaminidase 1
Medicago sativa L.	MsG0780036923.01.T01	_
Oryza sativa L.	LOC_Os05g02510.1	beta-hexosaminidase precursor, putative, expressed
Cucumis sativus L.	Csa017666	_
Glycyrrhiza uralensis Fisch.	Glyur000103s00007411.1	_
Codonopsis lanceolata	Cl_chr07_22670T	_
Arachis hypogaea L.	AH09G31470.1	Beta-hexosaminidase 1 like

Expression pattern