Gene detail

Detail information of Am02G039380.1 Annotation

Gene ID	Annotation
Am02G039380.1	COP1-interacting protein 8

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G039380.1	mRNA	Chr02	198821472	198822939	+

Sequences

CDS:

>Am02G039380.1
ATGTCTGAACCACCGTCTCAGCCACCAGTCCCGACCACAGAGGAGCCGTCGCAATACTGGTGCTACCACTGCGACAAACGCGTTTCCATCGAAACACTCGCGAATCTCCACGACGTCATCTGCGGCGAGTGCAAGAACGGCTTCGTGGAATCCATCCCCACACCTCCTCGCTCTCGCTCCCCTTCCTCTTCCTCCGATGACCCCAACTTCGGCTCTCAGTTCCTCCAAGTTCTTCGCCTAATTGCCCAATCAGCGCGTGACGAGGACGATGACGCTTCTCCTCCCCCTCCTCCCAGCCGTTCACCAGAGAACGATTTCCTCAGAATCGAGCTCGGAGGTTGGGATAACAACGATGAAGACGACGATGATGAAGGAATCGAGTTTCACGAAGGAACCGTGGAAGAGGAACACGAAGATCGATCCGTCAACGAGGATCCACACGTTGAGGACGAAGATCTAAGGAGAAGGAGACGCGAACTCCTTCGACTTCGAATTAGGGATTTAGCGACCCGAACCCGAAGCATGCGAAATCGGATCTTAGATTGGGCCGAAATTCTAATGGGCCTGGAAGACAATTCAATCGAGTTACGTCTCCAATCAGAGCGTTACGTTGGGAATCCAGAGGATTACGTGGACGCGGCGGAGTACGAGACGTTACTGCAGACACTGGCGGAGACAGATGGAGGTGGGAGGAAAGGAGCTCCTCCGGCATCGAAGTCGGCGGTGGAAGGGTTACCGATGGTGAAGATAGGGTTGGAGAGTGAGGCTGTGGCGTGTGCTATATGTAAGGAAATGATAGGTGTTGGAGAAATGGCGAAGAAGTTGCCGTGTGAGCATAAGTATCATGGAGATTGCATTGTTCCTTGGTTGAGTAGTAGAAATTCTTGCCCTATTTGCAGGTTTGAGCTTCCAACTGATGATAAGGAGTATGAGAGAGAAAGACTGATCAACTCTTGTATTTCTAATCTTAATTCTAATGGGGCTTCCAGTTCTGCTAGGAGATGA

Protein:

Promoter(3k):

>AM02G039380.1
TTAAAAGAACCATGAATCTAGGATTACACTATCAGAGATTTCCAGCTGTACTTGAAGGGTACAGTGACGCTGATTGGAACACTCTGTCAGATGATTCCAAAGCAACCAGTGGCTACATATTCAGTATAGCCGGTGGTGCCGTTTCCTGGAAATCTAAGAAACAGACCATTTTGGCTCAGTCCACTATGGAGTCTGAAATGATAGCACTAGCGACAGCCAGTGAAGAAGCTAGCTGGTTAAGATGCCTACTAGCAGAGATTCCCTTATGGGAAAAACCGATGCCAGCTGTGTTGATCCACTGCGATAGTACCGCGGCTATTGCAAAAATAGAGAACCGTTATTACAACGGTAAGAAACGACAAATCCGTCGTAAGCACAGCACAGTTAGAGAGCTACTAACAAAAGGAGCTGTGAGAGTGGATCACGTACGCACTGATCAGAACTTAGTCGATCCTTTGACGAAAGGATTAGCCAGAGAGAAAGTCCAAAGTACATCTCAAAAGATGGGACTACTGCCTTTAGAACCATGAGTCACTCGCAATGGCAACCCGACCTAAAAGACTGGAGATCCCAAGAATTAGGTTCAATGGGTAATAACAAGTTGTGAAGTGACAGGAGATGAACATGCTATTAAAAGTAAATAAGCATGATTCCTAAAGCGATGTAAGGTTGAGATAATAGAAACTCTTAATGAGATCTATACTCCATGTGGAGTAGAGTACCTAGCTACAGGAGTACTCTTGATAGACTCACCTTTGTGAATGTGGAAGTGGGGCCGCTTCCTATGGCATTTTGGGCAGAAATTCCTAGAGCGTTCACTAAACTGGGATAGACGTGCAGGGCCATAAACGCACGGGCATATGAGAATACACCTATGAAAAGGCTGTGTGTGGTTTCGACGATTAGAGATAGAGTTCAAGACTACGAGTCACTCTTGTTGAATCTAAATCTTAACCGCTACGCAAGGTTCAAGTCGTACGACACCTCTGCTTATGCACAATCTTATGGAGGCGCTTGACGCTATTTCTGGAACTGTTTTAAATTCAAGTGGGGGATTGTTGGAACATTGGTGTGAATTAAAAAATTTACAAAGTCCCACATTGCTTGGACTAAGCACTTGAAGAGTGCTTATAAGTGGGAAGTTCACACCTTTGGGTTGGGGCCCAAGGGGTACCCAGTTTTGTGAACGGGCAAGCACGCACTCTAACTGACCACCACACACGCGCGCGCCGCCGCCGCCCGTCCGACCGGCCGGGCCGGGCTTGGGCTGTGAGGTGTAAAGTATTTTTTTGAAATTAATTAAACTTTTATTTTATTTTTTTTTGGAACGTGCTTGTCCAGATTCATTGAACCGACCAGATACGACGAACGCTATCTGATAGAGCTGTTGCGGATTGCGCTCCAAGCTAGCTCGAAATTCGCGCAACGCGCAACAACTTGCGCATGAAGGCTCCGATTGCGCTCCAAGTCAGTTGTTAGTGGAGCCTAAAATCGTGCCTTGACTTGCGCACAAAGCAGTTGCTGAAGCCTATAAAAAGGCTCTTCCCTCATTTGACGAAAACAGATCGAAAAAACGCAAACTCTCCTCCGAAAATTCTCTTCTCTCTAAAATTCGTGAGTGGCCTACGAGCCATATTCTTCTTCTTCTTTTTTCTGAGAGTGGCCTACGAGCCATATTCCCGAGTGGTTATAAACCATATTGAGAGGTGTATATCTCGAGCGATTACTGACTGTGCAGTCATAATCGTAACTGGGCTGTTTTATCCTGGGGACGTCGTGGTTGATAGTCTGCTTGCACCATCGAGCAGTGCCACGAAACGTCTTAAAGAGAGCGACCTAGTCCGCGACTCATCCCAGTAATTTCTTCGGTATAATTTCGAAAACACCGAAACAACAGTATTTGATACTCGATTCGTCCATATATGAGTATGGTAATATCATTATGTATAAAAATTAACATTACCTACAAAAATTTGATTTATTTTGAGGATCCGAGGAAGTTGTTGTATATTATGCCAAGCAGTGAAAAACCTCTCATAATTTTGGATACTAGTAGAAAAGAAAACTCCATAGAGGCAAAAAATTTACATGGTCACATTCACTGGGGTGATCATGTTTGAGAGGGAAATTTTAGAGGGTTTTGGAGGGGAGAAATCTGGAGGACTTTAATCTATATTTTAATATATATATTTGAACTTAGTCTATATTTATAGCTTCCATAATTAAAAAAGAAAAACAAGTCCAACCCTCCTCTCCAAACCCCACACACATCCTTAAGATATTTATGTATGTAGAAAAATAAAATAAAATTGGATATAAATCTACGAACAAAGTTAAACATAGTTTTACAAAAATCTATTTAAAGAAATAGTAATATAATTTGACAAAAGAAAAACATGATAGATGTTCCGTAATTGCAACATGTAGCTTGCAAGAAAACATAAACACAGTAGATGGCAGAAAAAATCATTTAATGAGAGGTGGGGATTAGAGACAATTGATTTTCCTAACTAGTAAACAGTACTTGTCAACAAATGAGACACACACAACTGAATTCATATTATCTGAGACATATTGCTTGAAGAAATATTCACTACTTTAAAGAACTAGTAATATAATTTGACAAAATAAAAACAAGAAAATAAAAACACAGTAAATGGCAGAAAAAGTATATGGTAGAAAAAAACCAATTAATGAGAGGTGAGGATTAGAGAAAACTGATTTTCCTAACTAGTAAACAACAATTGCCAACAAATAAGACATGCACAATTATTCTGCTTTTTTGTTGAATGACACAATTATTCTATTTGTTTATTGATTACTGAATATTGATTTATCCTGAAAACCCACTAAATAATAAATAAATAAATAAATAAATTTAAATTAAAAGTGAAAAAGATGAGTCACCAATTTGAAGGATAGCGGTGGTGCTAGTATAATAGCATCTCGCTTTACAATTCGAAGGGCACAAAGAAAAACAAGCTCTCTCTTCGCCGCACT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	259	300	6.20E-11
PF14369.9	zinc_ribbon_9	18	52	1.10E-10
PF13923.9	zf-C3HC4_2	259	299	4.80E-10
PF17123.8	zf-RING_11	259	286	1.60E-07
PF12678.10	zf-rbx1	276	300	1.80E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon

trEMBL

trEMBL term	Description
A0A1S2Y226	_

SwissProt

SwissProt term	Description
CIP8_ARATH	E3 ubiquitin-protein ligase CIP8

KEGG

KO	Description	Enzyme
K11982	E3 ubiquitin-protein ligase RNF115/126	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G64920	COP1-interacting protein 8
Medicago sativa L.	MsG0180006107.01.T01	_
Oryza sativa L.	LOC_Os12g02620.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa009721	_
Glycyrrhiza uralensis Fisch.	Glyur000103s00007463.1	_
Codonopsis lanceolata	Cl_chr01_28220T	_
Arachis hypogaea L.	AH09G30930.1	E3 ubiquitin-protein ligase CIP8 like

Expression pattern