Gene detail

Detail information of Am02G036070.1 Annotation

Gene ID	Annotation
Am02G036070.1	pre-mRNA-processing protein 40A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G036070.1	mRNA	Chr02	190343404	190360926	+

Sequences

CDS:

>Am02G036070.1
ATGTCCAATAATCCGCAATATCCGGGGTTACAGCCTCTTCGGCCTCCAATTGCTGGTTCAGTGGATCCTCAGCGCAATTTCGGTCCACCAATGCCTGTTCAATTCCGCACTGTTGTTCCCACACAACAGCCACAACAATTTATTCCCATGCCTGCTCAACATTACCACCAATCTGTTGGTCCTGGTGTTACCCTAATTAATGTTGGAATGCCTCCTCAAAATCAACAACCTCAATTTTCTCAACCAATTCAACAGTTTCACCCGAGACCTGGTCAGCAATTACAACTCCCATCACAGGCAATTCCAATGCCAGTTGCCCGGCCAAACATGCAAACCTCATCTGAATCAATGATGCCTCAACCTGACTCTCAAGCTCCAAATGGTTACACACCAGGTTTAGGTGGCCCGGGAATGCCACTCTCTTCATCATACATGTTTGCATCATCCTCTTATGGTCAAGTGCAAAATAATTTTAATTCTGCCGGCCAATACCAACCTGTTCCCCAAATCCAAGCTCCTGCTGCTTCTTTGTCCCAGAGCATTACTCCCAGTGCAACTCCTCAGGGCAAGAGCGAACAACCTACAGTTACAACCGTCATGCCTTCGGCCACCGTTGTCTGGCCATGCCTTGCTAAAACTGGCTCTTCGGATTGGATTGAGCATACATCTGCCACTGGAAGAAGATTTTATTACAATAAGAGGACAAAATTATCTAGCTGGGAGAAGCCTTTTGAGTTGATGACACCTATTGAGAGGGTGGACGCATCAACAAACTGGAAGGAGTATGCTAGTCCTGATGGAAGAAAGTATTACTACAACAAGATCACCAAAGAATCAAAGTGGTTAATTCCTGAAGAGCTGAAGTTTGCCCGTGAGCAAGTCGAAAAGGCAATGGTCAATGGAACACTTCCTGAAGCAATACTGATCCCCCCTACTCAACCCTCTACAACTTCTGTGACTGAAGCTATTCCTAGTGCAGATAATCCATCTTTAACTGGTTTAGGCGAACCAACTAGTCCTGTCTCAGTTGCTCCTGTTGTTACTACGTCTACAAGTAATCCGCAATCTGAGATGACTTCTGGATCATCTGCCTCTCCTGCAATGCCCATAAATGAAACAAAAGGGGATGAACTTGAGGCACCTGTAAATACTATCACTCCATCAGATGCTAGTGTGGGAAATGATACTGATAGAGCTTTTGTTACGGATATAAATACTGCTATAACACCCATGAACGATGCCAACAACTCTGCTCAAGATACTGTAGGTTCTGCAGATGAAGTTCCGGCCGAAGATAAAGAAGATGGTAAAAATGATTCATCAGGGGAGAAAGTTAATGATGTGGCCTCAGAGACAAAGGCAGTTGAGCCAGAACCCTTAGTTTACGCGAATAAAATGGAAGCTAAAGATGCATTCAAAGCGCTCTTGGAGTCTGTAAATGTTGGATCTGACTGGACTTGGGATCGGGCTATGCGAGTAATAATTAATGACAAAAGGTATGGTGCCTTAAAATCTCTCGGAGAAAGGAAACAAGCTTTCAATGAGTACTTAAGTCAGAGGAAAAAACAAGAAGCAGAAGAAAAGCGTATGAAACAGAAAAAAGCACGGGAGGATTTTAGAAAAATGTTAGAAGAGTCCTCGGAGTTGACTTCATCCAGTAGATGGAGCAAAGCAGCGGCTATTTTTGAAGATGATGAACGTTTCAATGCTGTTGAGCGAGACAGAGATCGCAAGGAAATGTTTGATAGCTTCTTGGAGGAACTAATAAACAAGGAGCGAGCAAGGGTACAGGAGGAACGAAAGCTACATAAAGTGGAATTCAGGAAATTTTTGGAATCTTGTGATTTTATAAAGGCTAGTACACAGTGGCGAAAAGTTCAAGACCGCCTAGAGGCTGATGAAAGATGTTCTCGACTTGAGAAAATTGATCGCTTGGAAATATTCCAGGATTATTTGCGGGATTTAGAGAAGGAAGAGGAAGAACAGAAGAAGATACAGAAGGAGGAGTTGAGAAAGGCAGAACGTAAAAACCGTGATGAATTTCGCAAATTGATGGACGAACATATTGCGTCAGGCATTCTTACAGCAAAAACTAACTGGCGTGATTATCATTTAAAGGTGAAAGACTTACCAGTCTATTTAGCAGTTGCATCAAACACCTCAGGATCAACTCCAAAAGATTTGTTTGAGGATGTTGCTGAAGAGCTAGAGAAACAATATCAAGAAGAAAAGAGTCGAATAAAAGATGCTGTGAAGTTGGCAAAGATCACGTTGTTGCCAACCTGGACTTTAGAAGATTTCAAATCAGCTTTATCAAAAGACATCAGCTCTCCACCTATATCTGATTCCAACTTAAAGCTAGTGTTTGAAGAGCTACTAGAACGAGCAAGGGAGAAGGAGGAGAAGGAAGCTAAGAAGCGTAAACGCCTTGGAGATGATTTCTTTCATTTACTATATTCTACAAAGGAAATTACAGATTCTTCAAAGTGGGAGGACTCTAGGCCACTCGTTGAAGATAGTCAAGAATTCAGATCTATTGGAGATGCTAGCTTTTGCAAGGAAATATTTGAGGAGTACACTGCACAACTGAAAGAAGTGGCAAAAGAGAATGAGCGGAAACGGAAAGAGGAAAGGGCAAAGAAGGATAAAGATAGGGAGGAAAGAGAAAGAAGGAAAGCGAAGCAGAGAAGGGAAAAAGAGGGAGGGCGTGGAAGAGAGAAAGAGGAGACACATAAGAAGGATAGAACAGACAGTGACAGTTTGGACTTAACTGAACCCTCCAAAGAAAACAAAAGATCTGGAGATGATAGTAGAAAACAACGGAGGCATCATCAAAGTCCCGATCACGTTTCTCATGAAACCGATAAAGAGAGGACTAAGAAATCTCACAGTCATAGTAGCGACCGCAGGAAATCAAGACGGCATGCATCTGGTCATGAATCTGATGATGGCACGAGGCACAAGAGACACAAGAGAGACCGCGATTCGTATAGAGGAGATCTTGAAGACGGGGAATTCGGTGATGATGTGGATAGATGGTAA

Protein:

>Am02G036070.1
MSNNPQYPGLQPLRPPIAGSVDPQRNFGPPMPVQFRTVVPTQQPQQFIPMPAQHYHQSVGPGVTLINVGMPPQNQQPQFSQPIQQFHPRPGQQLQLPSQAIPMPVARPNMQTSSESMMPQPDSQAPNGYTPGLGGPGMPLSSSYMFASSSYGQVQNNFNSAGQYQPVPQIQAPAASLSQSITPSATPQGKSEQPTVTTVMPSATVVWPCLAKTGSSDWIEHTSATGRRFYYNKRTKLSSWEKPFELMTPIERVDASTNWKEYASPDGRKYYYNKITKESKWLIPEELKFAREQVEKAMVNGTLPEAILIPPTQPSTTSVTEAIPSADNPSLTGLGEPTSPVSVAPVVTTSTSNPQSEMTSGSSASPAMPINETKGDELEAPVNTITPSDASVGNDTDRAFVTDINTAITPMNDANNSAQDTVGSADEVPAEDKEDGKNDSSGEKVNDVASETKAVEPEPLVYANKMEAKDAFKALLESVNVGSDWTWDRAMRVIINDKRYGALKSLGERKQAFNEYLSQRKKQEAEEKRMKQKKAREDFRKMLEESSELTSSSRWSKAAAIFEDDERFNAVERDRDRKEMFDSFLEELINKERARVQEERKLHKVEFRKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKAERKNRDEFRKLMDEHIASGILTAKTNWRDYHLKVKDLPVYLAVASNTSGSTPKDLFEDVAEELEKQYQEEKSRIKDAVKLAKITLLPTWTLEDFKSALSKDISSPPISDSNLKLVFEELLERAREKEEKEAKKRKRLGDDFFHLLYSTKEITDSSKWEDSRPLVEDSQEFRSIGDASFCKEIFEEYTAQLKEVAKENERKRKEERAKKDKDREERERRKAKQRREKEGGRGREKEETHKKDRTDSDSLDLTEPSKENKRSGDDSRKQRRHHQSPDHVSHETDKERTKKSHSHSSDRRKSRRHASGHESDDGTRHKRHKRDRDSYRGDLEDGEFGDDVDRW*

Promoter(3k):

>AM02G036070.1
ATAAAAAGGGATCAAATTATTGGAATGGTTTGGTGAATGCTTGGGAGGAGTTTCGTAACAATTTGGTTTGGGAAGTTGGGAATGGTGAGGATATCCGTTTCTGGCAAGACAATTGGATCCCTTATTTTGATAATCTTGCTTCCTATGTGTCTAATGCTATCAGTGAAGAAGATTCGCAACTATGTATTAGCCACTATGTCACTTATAGTGGAGATTGGAATTGAGGATTGTTTGAAAATTACCTTCCCCAAGAGATTATGCATAAAATCTCTAATTACCCTCCCCATCAGTGCTTCACAGAGATGATAAATTCACTTGGGGAATGACCCCTGATGGTAGTTTTACTACCAAATCAGCTTACAAATCTCTAATGGGTGGCACTACAATCACCCCTGTTCCCAATATGAATTGTATTTGGAAATGGAGAGGAAATGAAAGAATTCGAACCTTTCTTTGGAAATTAAGTCAAGAAGCATTTCTCACTAATGCTGAGAGATTGAGAAGAAGAATGGCCACGTCTAGCAGTTGTCCATTCTGTGCTGGTGAAGAAGAAACTCTGTTCCACCGTTTCTGTGACTGTCGTGTGAGTGCAATGATTTGGAGCTGCTTCAAAGTTCGAAATCAGGGACATTTCTTCAGCAACATTACCTGGTTTCAATGGCTGGAAGTTAATCTTAGACAATCAGATGGTAGAAATGAGGAATTAAATTGGAGTATTTTGTTTGGTGTTACCTTGGACATTTTGTGGAGAAACTGAAATGATTTCATTTTCTCTCAAAAGATTCACACTACCCAGGCGTCAATTATCAGAATTAGACATCAGGTGGAAGAAATTTTCAACTGTGTGACGCGCAACGCTTCGCTTCATCCCCAAATCCACCTTGATGCTGAAGATCTGCGTGACCATTGGTGTCCTCCTCGAGAGGGTAATTGGAAACTTAATTGCGATGGTTCTGTCCACAGTAATGGCAGATCTGCTGGTTGTGGTGGTATCTTGCGTGGCTCCAACGGCGAGTTCATCTTTGCCTTCTCTCACCGGCTCACGGCTTGCAGCGTTACAGAAGTAGAGCTTCGGGGTATCTTGAGCAGAGGATTTCGTGATCATGAGGTGGAAACCGATTCTTCTGAGATCATTGCTGGCAGGGTTACGATGAACATCGAGTTGAAGAAGCTGGCTGTTGAGATTCGAGATGTGGGTGGTGGTGATTTAATGGTGACTTGGAGGAAAGTGAAGAGAATAATTAATTTTGTGGCTGATACACTTGCCAAGACTAGTCATTGTATTCACGACTCTATTGTCTTTTTTAATTTTATTCCTGGTTTTCTTGTAAATGCCCTTAACCACGATGGTTCTGGGCCTAATGGAGCGGGTCTCCTGTTGTTTTTTCGCTTTTGGGCCTCAGGGCCCTATTTTTTTCATAAAAAAAAAGCATGCTATTTCTATGATGTTTTAACTTTTACTTGTTTGCCGAGTTGATGTGGTTGGTTTTGGATATATTGGCTTCACATTGAATTAGGTTTATATTGTGTACCTGTGTTAGGAGAGATTAAATTGATATTAAGTCGGTAATATTAGGGACTAATGTGATCGTAAGTAAAGTCAGGGAATAACTTAATGTTTATTGTCTTTTAAAACGGGTGCGTGAAATGAGTTATGGTATAAGAGATCGTCCTATACCATCACCAAAAACCGTACGTGACAAGGCAAACCAATCATAACATCAACTCTAGTTCACCCTCCATTAGCGCCAGAGCCACAAGCTTCACAACTTATTAGTATTATTATGGTTTTGATTCCACCATCACTATGATCTATATGATCTAAAATTGTACGCCTTTCGTCCATAAAATATTAGTATTATTATGGTTTTAATTAAATAATACTAGTAAAAACTTCTAACATGTTAAAAGATGACGTATATTTGTGCATTGCACGGGTGAATCACACTATTGTGTATATAAATTAAGTACATATCTAGTATCTACGTATTTAAAAAGTTAATTTCCTAACTATTTTCTCCTTACAAAATTTAAATTTCATAACATTAAAATATGTGTACTCGAATGTAAGACTCAAATTCATGAAATTAACTTCTAGAAGACACGTTTTTTTACATCCTGAAAGTTAACTTCTAGAAGTTGACTTTCATACCATCATATGAATTCAAAAAAACATATTTTATGGAAGTAAACTTAAGGACTAGGGTATTTTAGGAAAAAAATTAGAGACATTGGGCTGTGTTAGAAAAAATGGTGGGTGCAAATAGGAAACCCTATTTACTGGGTTAAAGCTTCACACTAAAAAAGCCCCAAAAGAAATGAAACTTCACAAAAAAGGTACGAAGTAGATGAAAAACGTAATTTTCCGCAGATTTAAGAGGACACTTGCCAATCCTCCCAGTCCTGTCTACTTCTCAATTTCGATCACTGTAAAATCCCTCTTTCAGTTTCAGCGCTGAATCAAAAACCCGCAGGATTAACATTCACTTGGCGCCTCTTTCCCATAAACCTCGTATCCATTGGTATGTCTATCATCTACAACGTTGTATCATGTACTTCTCAATTACTGTCTTCTCTTGAAACCGCATTTTTTCTTTCTGCTTGCTTGCAACCTAATTTTCTTTATCTGGGGTTAAAAAAGATTCAATCTTGAAGCTTCCCCGCCGATTGATTTTTTTGCCCTGGGTTAATTTGGAGGCACATTGGTTTTATTTTCTAACTTTCTGCTATTCTATTTATTACAAGATAGGAGTAGCTGCTTATTGAATTTGATTTTAAGTGTTGTCGGTGATTAGTTTCTCAATTTCAGTGACCTCAATTTTAATTTTGATTCTTGAGCGCCACTTCTTTTACACTTTCAGTATGTCCTGGTTTGAAATAAATTCACAATTTTTACTGGGAATTGATCACTGTTCCGTTTTTTTTTTTGGTTTTATGTAATGCTTGAATAGCTCTTTACTCTTGTAGACTGCATTGGACTCTGGAGGCTTGTCTGCTCAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01846.22	FF	467	516	1.50E-53
PF01846.22	FF	534	582	1.50E-53
PF01846.22	FF	604	651	1.50E-53
PF01846.22	FF	676	731	1.50E-53
PF00397.29	WW	216	243	3.10E-18
PF00397.29	WW	258	284	3.10E-18

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005576	extracellular region	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0008283	cell population proliferation	Biological Process
GO:0030154	cell differentiation	Biological Process
GO:0007165	signal transduction	Biological Process

InterPro

InterPro term	Description
IPR036020	WW domain superfamily
IPR001202	WW domain
IPR039726	Pre-mRNA-processing factor Prp40
IPR036517	FF domain superfamily
IPR002713	FF domain

trEMBL

trEMBL term	Description
A0A8B8M8Z0	_

SwissProt

SwissProt term	Description
PR40A_ARATH	Pre-mRNA-processing protein 40A

KEGG

KO	Description	Enzyme
K12821	pre-mRNA-processing factor 40

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G44910	pre-mRNA-processing protein 40A
Medicago sativa L.	MsG0180005744.01.T01	_
Oryza sativa L.	LOC_Os01g34780.2	protein binding protein, putative, expressed
Cucumis sativus L.	Csa021053	_
Glycyrrhiza uralensis Fisch.	Glyur000849s00021630.1	_
Codonopsis lanceolata	Cl_chr02_19830T	_
Arachis hypogaea L.	AH09G27250.1	Pre-mRNA-processing protein 40A like

Expression pattern