Gene detail

Detail information of Am02G034040.1 Annotation

Gene ID	Annotation
Am02G034040.1	tubulin beta 8

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G034040.1	mRNA	Chr02	185150932	185153494	-

Sequences

CDS:

>Am02G034040.1
ATGCGTGAGATTCTTCACATCCAGGGAGGACAATGCGGTAACCAGATCGGAGCCAAGTTCTGGGAAGTGGTTTGTGCTGAGCACGGGATTGACTCAACGGGAAGGTACCAAGGGAACAACGATTTGCAACTCGAGCGAGTTAACGTTTACTATAATGAAGCGAGTTGCGGACGATTTGTTCCTAGAGCTGTGCTCATGGATCTGGAGCCAGGGACTATGGATAGTGTCAGATCTGGTCCCTACGGTCAGATTTTCCGTCCGGATAACTTCGTTTTTGGTCAGTCCGGTGCCGGAAACAACTGGGCGAAAGGTCACTACACCGAGGGAGCAGAGTTGATCGATTCCGTCCTCGATGTTGTCAGAAAGGAAGCAGAGAACTGTGACTGCCTTCAAGGGTTTCAGGTTTGCCACTCCCTCGGTGGTGGAACTGGTTCTGGAATGGGAACGCTTTTGATTTCAAAGATTAGGGAAGAATACCCTGATCGAATGATGCTCACTTTCTCTGTTTTCCCATCCCCAAAGGTTTCAGACACTGTTGTTGAACCTTACAACGCAACCCTCTCTGTCCACCAGCTTGTTGAGAACGCCGATGAGTGCATGGTTTTGGATAACGAAGCTCTCTATGATATCTGCTTCCGCACCCTTAAGCTCACTACTCCAAGCTTTGGAGATTTGAACCATCTAATTTCAGCCACAATGAGTGGTGTAACGTGCTGTCTTCGATTCCCTGGTCAATTGAACTCAGATCTTCGCAAACTTGCTGTGAATCTCATTCCTTTCCCTCGTTTGCATTTCTTCATGGTGGGTTTTGCCCCACTCACATCTCGTGGGTCACAACAGTACAGAGCTCTCACTGTACCTGAGTTGACCCAACAAATGTGGGACGCCAAGAACATGATGTGTGCTGCTGATCCTCGGCATGGTCGCTACTTGACAGCTTCTGCCATGTTCCGTGGTAAGATGAGCACCAAGGAGGTTGATGAGCAGATGATCAATGTTCAGAACAAGAATTCATCTTACTTTGTTGAATGGATCCCCAATAATGTCAAATCTACCGTCTGTGATATTCCTCCAACTGGTCTCAAAATGGCTTCTACGTTTATCGGCAACTCCACATCTATTCAAGAGATGTTCCGCAGGGTGAGTGAACAATTCACCGCGATGTTCAGAAGAAAGGCTTTCTTGCATTGGTACACAGGAGAGGGTATGGATGAGATGGAGTTTACTGAGGCTGAAAGCAACATGAATGACCTTGTCTCTGAGTACCAGCAGTATCAAGATGCAACTGCAGATGATGAAGGGTATGACTATGAAGAGGAGGAAGAAGTTCAGGAAGAAGAGTAG

Protein:

Promoter(3k):

>AM02G034040.1
TCCCCTCTGTCATGGTTTACTGTGACAGCATCTCAGCAATTCAGTTGGCTACAAATCCCACTTGCAATGAGCGTTCCAAGCATATTGACATTGACTGCCACTTTATCAGAGAGCATGTCTCCTCCAACTTCATCAAATTAATTCATGTTTCATCCCAAGACCAGCTTGCTGATCCACTTACCAAGGCTCTTCCAAGACCTCTTTTCCAGTCACTTACCTCTAAGTTGGGGTTACATGACATGTACCTTCCAACTTGAGGGGGGGGGTGTATTACAAAATAGATTTTATATTATATCTTTTTTTAGATTAGTTAATTACTATTTAGTCCCTTTAGTTAACTTAGTTAATTGTTTTTTGTTGCTGTTATCTTTATGTCTGACTGGGAGTTGTCTGAGTTGAGCTCACTTTCCCTTTCTTTGTATTCTCAAGCTGTATACAGGGATTCAATTCATCTCAATGCAATTCAGTTGAGCTTTTCATAACAAAATGATTTATGTTACACGATTCTGTTACTCTCAATCTTCAATAAAAGCTTCCTTGCAAATTGCAAAATTTGAAGGATATTTAAGCAGACAGTTATTGTAGATGAAAAATAGCAAATTATAGTTGCTCGACCTAGGGAGTTGACCTCTCTTCCTATTGGCTCATTGCTAACCGGACACATCCTTTAACAAATAATTTTATGCTTATTGTGGAAGAAAATTTCCTTGAGAAGAGTTTCCTTCAACAAAGTTTCCTTGGATGGTTGGTTTCTGACTTTGAAAATGGTGGTGATGCCCTCCTAGCTAAGCTGGCTAGGGGCTATGGAGCTGGGATTAGACTTGTGTTTGAAGTGGGGTATGCAAAGCTTTTCTTTTGAAAATGATCGTTTAGAGGCTGTCACTCTTGTCTTGACGAAGGACATTAACATCCTACACGGTTATGCCCACACGATTTTGCGGATTACTAACCTTATGGTCAAATGTGAGGTTGATTCATAGGTTGGTATGATCTTAGGGTTGTTTCCACTTATTTTCTTTTTTTGTTATTGTTTTTTTGCTGCCTTGTAACACCACAAAAAAAAGACACAAATCGAAAGCAGGCTCGATACAAAAACTTTGCATCCAAGTCTCGAGGCACCTACAATAAGCGAGAGATTAGTTACTGCTATCCGTGCGGTTGATACCTGGGTTCACCCAAGTATATTAGTGTCATTAATTTGTTAATTTTTAATAGTTACTTCTAATTTTTTATTCATAGAAAACTCACAACGCAATTAAAACGAAAAAGACGGATCACTTGCTCAATGTCATTATAGCATAAACATTTCCAAATTAAAATGATAAGGGAAATCAATCTACTACTATTAGTTATTTGTTTTAAGTGAATTTTCTCTCGAAAATAACATTTTTAGGAATATAATGATAGGAAAAATAATCATAAGTATTTTCCAAAAAGAGTGTTTGGTAAATCTTTAAACATTTCATGGAATAAGGTAGTTGCAGAAATTAAAATATTTTTTAGGCTAAATTATAGTTTTGGTCTCCATATTTTCAAAAATTCAGACATTTGGTCCCCCTATTTTAAAACTCAGACATTTGATCCCCCAATTTTAAAAAATCAAATACATTTAGTCCAAAGAGGGACCAAATGTCTTTGATTTTTTAAAATTGAGGGACCAAATATTTTTTATTGTTACCCATAAAAAACTGAAAATTCCTCTTGGGACTAAATGTCTTTGATTTTTTAAAATTGGGGGACCAAATGTCTGAGTTTTAAAATAGGGGGACCAAATGTCTGAATTTTTGAAAATAGGGGGACCAAAACTATAATTTAGCCTATTTTTTATTATAAATTTCACCTTATCGTGATTGAATAATCTTTTTCAAATTGATAACAAACATGAAAATACTCATCCGTAACCCGTGAATTCTCATAAGTCTTTTTAATTATAGACTCGAAACAAACACCCGTAACCTATATTACCCAAGAAAAAAGTCAACTCTTGGAATGAAGCGACACAAATGGATCTAATCTAAGGCTCTGTTTCGCAAAGACAATTCACTAACTTATAGTAGATAAGTTCCTCGTAGGTGTTTGACATGACTAGTTTATAACATTTTTTTCACTACTTGAAGTAGTGTTTGTGCTTACGGTGTTTCATTCATTCTCTTATTTTTAACCTTATTATTTTAATTAAATTCCTTATTGAATGAATTTTCTCTTTTAGTTTATAGTATTAATTACAAATGTTTTAGTTTTATATTTATAAGCTAATTCCACCTCCACCGACTATTCACTAACTACTATTAACTTAATCGTTATTACCCGGTTTATCTACTATGCACTCACTTATTCATTATCTACTATTTTTTTCCCCATACATAGCCTAAAGATAGTCAAATCATGCTTTTGATTGAAGCCTAGAATAACTGCTTCTCACATGACATGATCCAGCCCGCTATCACGTGCAACTTGCCAGCTTTTCTTTTCATGTGCTGTTGCATGGCCCAAAAGCACTTGTGTAAGTTGTGTTGGACTCAAATCTTACATACAGGCACATGCACTATGCGCGTCTTTCTCACTCGCCGACGACGAGCGTCGCCTTTCCAATTCCAAAACATCGAATCAAAGGAGGTACTTCCTCCAAAGCAATAACGGCCGGAATCATACGAAATCGGGACCGTCCACGTATCCCTTGATAACCCCAGAACAACTCAGCTTGACTGCGTAGTAATAAATGCATATGAAATTCAAAATTACCGTACGCTTTTCAAAATTTAAATTCCCACTTAAATCAAACGGCGCCGTCTTATTACCCGTTAACTGCTGAGCCCCAAGTAACACCGTCAAACACCCGTTACCTCCGAGCTATAAAAAAACACTTTCTTCTTCCCTCTCATTTCACAGACGAGGGTTTCTGCGTTTCACTACTTCGTTCGTCTTTTCTCTTTCTAGAACTAGAACTCGCTCGCTTTACTTTCTCCCACTAAAACTCGTCGTTCGAACTCAGTAAACAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00091.28	Tubulin	3	211	1.20E-69
PF03953.20	Tubulin_C	261	382	3.70E-39

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0003729	mRNA binding	Molecular Function
GO:0016757	glycosyltransferase activity	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0005515	protein binding	Molecular Function

InterPro

InterPro term	Description
IPR037103	Tubulin/FtsZ-like, C-terminal domain
IPR036525	Tubulin/FtsZ, GTPase domain superfamily
IPR003008	Tubulin/FtsZ, GTPase domain
IPR008280	Tubulin/FtsZ, C-terminal
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain
IPR023123	Tubulin, C-terminal
IPR017975	Tubulin, conserved site
IPR000217	Tubulin
IPR013838	Beta tubulin, autoregulation binding site
IPR002453	Beta tubulin

trEMBL

trEMBL term	Description
V4U7G6	_

SwissProt

SwissProt term	Description
TBB8_ARATH	Tubulin beta-8 chain

KEGG

KO	Description	Enzyme
K07375	tubulin beta

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G23860	tubulin beta 8
Medicago sativa L.	MsG0480018845.01.T01	_
Oryza sativa L.	LOC_Os03g01530.1	tubulin/FtsZ domain containing protein, putative, expressed
Cucumis sativus L.	Csa017969	_
Glycyrrhiza uralensis Fisch.	Glyur000879s00025362.1	_
Codonopsis lanceolata	Cl_chr03_47290T	_
Arachis hypogaea L.	AH19G42990.1	Tubulin beta-1 chain like

Expression pattern