Gene detail

Detail information of Am02G033610.1 Annotation

Gene ID	Annotation
Am02G033610.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G033610.1	mRNA	Chr02	184119846	184122942	+

Sequences

CDS:

>Am02G033610.1
ATGCTTTGTAAAGCAGCTATTCAGAGTTTATCTTCCATCCGCTGCTTGCGTGTTCTTTCTTTCTGCAACTCAAACTCTTTCAAAGAAGGAGTATGTGTTCATAGCCCCATAATTAAACTGGGTCTTCAAGATGACTTATATTTGACCAACAATTTGTTATCTTTATATGCTAAATGCTTTGGAGTTAACCAAGCACTCCATTTATTCGATGAAATGCCTTACAGGGATGTTGTATCATGGACTACGGTTCTGTCTGCTCATACCAAAAATAAGCATCATTTCGATGCCCTTGAATTGTTTGATATGATGTTAGGTTCTGGCCAGGTCCCGAATGAGTTCACATTGGCCAGTGCCTTGAGATCGTGTTCAGATTTGGGGGAGTTTGAATGTGGGACTCGAATTCATGCATCTGTTGTGAAGCTTGGCTTAGAAATGAATCCCTTTCTAGGCACTTCTTTGATTGATTTTTACACCAAATGTGATTGTAATGCTGAGGCATACAATTTGCTTGCATCGGTAAAGGGTAGTGGTGATGTTGTGTCTTGGACAACAATGATCTCTTCTTTAACGGATAATGCTAAATGGAGCGAAGCTTTACAAATCTATGTCAAAATGATTGAAGCAGGTGTTTACCCGAATGACTTCACATTTGTTAAACTCTTAGGCGTGGCGGCGTCTTCTGCACTTGGTTTGGCTTTTGGGAAACTGTTGCATGCACAGTTAATCACATTTGGTGCTGAAATGAACTTGGTGTTGAAGACGGCCATTGTTGATATGTATTCAAAATGCAAAAGGATGGAAGTTGCTATTAAGGTTTCCAATCAGACCCCCGAATATGATGTGTACTTATGGACCACCATTATCTCTGGATTTACTCAAAATTTGCAGGTTAGAGAGGCTGTCCATGCATTTCTTGATATGGAATTATCTGGAGTCCTACCAAATAATTACACATATGCTAGTTTATTGAGTGCTAGCTCCTCAATTTTATCATTGGATCTAGGGGAACAATTTCATTCACGGGTTATCATTGTTGGACTTGAGGACGATATTCATGTAGGAAATGCACTGGTTGATATGTACATGAAATGCTCTCACATCACTACCAATGCTGTGAAAGCTTTTAGAGGGATAGCCTCACAAAATGTCATTTCTTGGACTTCTTTGATTTCAGGTTTTGTAGAGCATGGTTTAGAAGAGGAGTCTTTTCAGTTGTTTGCTGAGATGCAAGCATCAGGAGTGCAACCAAATTCCTTTACACTATCTACTATTCTGGGAGCTTGTAGCAAAACGAAGTCTCTTGTTCAAACAATGATACTTCATGGACATATCATAAAAACAAAAGCAGACATAAATATAGCTGTTAGAAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGGTGGATGAGGCATGGTCTTTAATTGGCATGATGAATCATAGAGATCCCATCACATACACAAGTATATCCGCAAGATTAAATCAGATGGGCGATCATGAAATGGCATTAAAAGTTCTCACTCGCATGTGCAACGACGAGGTTAAGATGGATGAGTTCTGTATGCCAACTTTTCTATCTGCTGCTGCTGGCTTAGGCACTATGGAAATCGGAAAGCAGCTGCATTGCTATTCTGTCAAATCAGGCTTCCAGAGAAGTAACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAGTGTGGTAGTATGCAAGATGCATACAGAGCTTTCAAAGATACAAATAAGCCACATGCATTTTCATGGAACAGTTTGATATCTGGATTGGCAACAAATGGATACATATTCCGTGCCCTTTCTGCCTTTGACGACATGAGGTTAGCAGGAGTTAAGCCCGATTCTGTTACTCTCTCGTCACTGATTTCTGGTTGCAGCCATGCTGGTTTATTAGATCTTGGTCTTGAGTATTTCCATTCTATGGAAACAGCATACAATATAACACCAAAATTGTATCACTATGCGTGTTTGGTTGATCTCCTGGGTAGAGGCGGTCGCCTAGAGGAAGCTATGGGAGTCATTGAAACAATGCCTTACAAGGCAGACTCAATGATTTGTAAAACTTTATTAAATGCATGCAATTTACATGGAAATGTAGCCCTGGGAGAATCTATGGCAAGGAGGTGTCTTGAACTTGATCCATATGATCCTGCAATATATTTGCTGCTTTCAAACCTGTATGACAATGCTGGACTCTCTGATTTAGGAGAGAAGATGCGTAGGCTGATGAGAGAAAGAGGTATAAGGAGAAGTCCTGGGCAGTGCTGGATGGAGATAAGAAGCGGAATTCATCACTTCTCTGCAGGAGAGAAGATAGATAAGAATGAGATTAATGAAAAGCTGGAGTTTCTTATAACCGAGTTTAGGAGTAGAGGATATCCTTACCAAGAGAATGAACATAAGTTATACCACTCAGAGCAATTAGCAGTTGCATTTGGTATTCTTAATGTACCAGCTAAGGCGCCAATACGCATAAACAAGAATTCACTGATCTGCCCTCACTGCCATACTTTTATAATGCTTTCCACACATATAGTTGGTAGGGAGATAATTGTGAGAGATGGGAAACGGTTCCATTTCTTTAAGGGCGGACAGTGTTCTTGTAGAAGAGCTATATCATAA

Protein:

Promoter(3k):

>AM02G033610.1
GCTATTGGTGCTAGTTTGCTCTCGTCCAATCAAATTGGAGCTTAAGGACGGGATATGAGTTCAAATGAGGAAGAAGCTAGAGTTAATATATCTCTTTCACGAGGTACCAAATTGACCCAAAAATAGAAATGTAAGGCACTGTTAAGTCCCTTAAATTTCGACTAACTTGTAAGGCCACATGATGACCCTAACAGACACATCAGCAAACTAATGTGACACATTAGCAAACAAATAGCTGAATTTCTACGCAATCTAATCAAAGCTACCGTGTCCCTCTTAGTATACAAAAGAAACTTATTGTGATATTAATTATTCCTCGAACCAAATTCAGTGCCCGATGGTACTGTATCTGAGGGTGCGTTTGATTTGCTAAAAAGTAATGGACTAGACTGGACAACTCCAGTTGTACCCTGTTTAATTTGGAAACTGTTCATGGTACTGGACAAAACTAGGGGCAAGGGACGGGACAAAAACCCAAAATATTGTCTTTCACAAAACCTCAGTACAACTTCCTGATTATATACCTCAAAAAAATACCAAAATATTATTCTAATTTCCTACTCAATAAGTGTATTTTTCTCTCTTTCTTTCCTCTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTATCTTATTATTCTCTCTCCTATTTCATTCCTCTCTCTCTCTCTCTCTCTCCTTTCACCTCTCTTATATTTTCTCATATCATGACCCCTCTCCCTCATCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGTCGCTATATCTCTCATGCTATGTCTCTTATATTTTCTCATCACTCTCTTTCTATCTCTCACATCTAGGGGTGTTCAGTGGTTTAGATAAATCCGAACCAAACCGTAATCGAATCCAAACCGAAGTGTCGGGCAATTTTTCTGATCGGGCCAAATCCGATCCAACCCGTAAAGACCCGTTCTAGTTCGGTTCGGGCAACAAATTTTAAATTATAAACCCGAAGACCCATGTACCCGAACCGCATCGTGTATAGTCTATAGATAACTATTAGACTTCTCCGTTTTTGTATTATTACTAATTACTCAAAAGTTCAATTGCTTTCCCCCGCTTCGGCTTCACCGCTAAATATCAATTCCCTCACACATTTAGCGCATTTCCAAGGCTGGTATTGAATCACATCAATTCCCTCACACACCCCTACGCATCACAACAATCATCACAATTCACAAATCACAAGTCTCAATTGAACTCTCAGTAGCTATATAATGACTCATTCATCAAACCCTAAGATTCACATCATTTGATTTGTTACTCCCATTTTTTTCTTCCCAGCATCTCCGCATCAAAGCACCGCTCTCGTACGTTCACTTGGTTCCTCCCACTTGCACGGTAAGATTTAACGATTTCTTCTTCTTTTCGTTAATTTCATTTATTGCTCCAAGTCTTTCATGATTTCCTTTGTGTCTTGATTAATTTCTTGACTTCTTCCTCCTTATCGGTTCCCATCATCCATTTCCCTTTGTCTCTGTTCTTGATTTCATTACTGTTCTGTTCTTGCTAGTGTCTTTAATTTTTTTTTCCTCATTTGTTGAATCACTTTCTTGTATGTGTAATTTATTTTATTATTTTTGATTACTTAATCCCTTTCCTTATTTGGGTCTGTTTGTGTCTTTAATCATTTGTTATTTGAGTTATGTAACCCCTTTATTTGTGTACATATTCATTGTATTTGATTTAACATGCATGTTCTGATTTGTTGAATTTTGTCTATGTTTAAATAAAAGAAGTTAACCTATTCTTGCAATCCAATAAGTCTATTCAATACTACTGCTTCCTATGATAATGGCCTGTTTATTTGCTATTTTGTTTGATTGTTACTGCTGTATTCTTTTATAAAACAGTATCATCACTTATTGAGTTTGAATCTTCTTTTTTATCAGGATCATGGATTGCTTGGTTCGAGCAGAAAAGCAATTTGATTTTGCAGCTGCTTTGAAGCTTCAATGTTGCATTTTATGTAGTTTAAGTTTAAAGGAGAATTTTGTAGTAGTCTTTGACTTTTTATCATTTTATTTTATGTTTAAGTTGTAAAACTTTTTTTTTTTTGATAAGCTAAGTTGTAAAACTTTATTTTAACTTTGGATGGATTGGATGAATTTTCCAAATCATGAATGAAGTTTATGAATCAGATTGGTTTTGGATACTATTATAAAAAGTTTATTAGAAAATTTGTATTGATAGCGCATGACCGTGAGCCCAATCCAAACCAACCCGTCAAACATTGGTTTGGTTTGGTTCGGATATTGGGAAAAAAAAATTCAAAATCCGAACCAACCCAAACTGAATAAATATGATTGGTTCGGGCAACGGATTTGGTCAAAACCAATCCAAACCGCGAACACTCATATCTTCTCCATCGTCCATTTTTCTTTCTAATTTTTTAATTATATTATATAATTAGGTTATATAAAATGATTATAAATTATAATAAATTTTATATTTTTTGTTTTGCGCTTATGCATTGTTCATCAAAATGATGTATGAGACAAAAAGTTGTCCAAAAAAACATCCTAAATATTGGTCATATTAAAATGGTTAAAAATTCTCCAACCTTATTTTTTCCTTGTGGTGGGAACGAACACACTCTTCCTGCCTCGACGGGTCGACCCTCACTTCCTATTTTCCCGTTATACCACCGACCCAGTTGATATCCGTTCCTCTATCCTACCTATCCCACCCATTTGCTAATCTTCATATAGTTGGTTTACCAATTCAAAACTATATTCTTGAGAGGCGCTTCCTTTCATTTGATCCTCGTTGTTTTGGAATATTTGCTACGCAGCTCCATCATCGCAATGTTCAGTTCACACTTCACAGACAGTGTCACATTTGATGTTCTGAAAACCTATGTGATTTCCCACTCCGTTTAAGGTTGCACGCTATGATACTTCTAAGCATAACAATAAGTTGTCATTGCTAAGAACGAGTGTGCCTCCCCGTAACGAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13041.9	PPR_2	75	122	7.00E-70
PF13041.9	PPR_2	178	221	7.00E-70
PF13041.9	PPR_2	280	325	7.00E-70
PF13041.9	PPR_2	382	429	7.00E-70
PF13041.9	PPR_2	583	631	7.00E-70
PF01535.23	PPR	384	414	7.30E-57
PF14432.9	DYW_deaminase	807	874	7.50E-24
PF20431.1	E_motif	701	763	1.10E-10

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH28

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	Molecular Function
GO:0009451	RNA modification	Biological Process
GO:0005739	mitochondrion	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046848	E motif
IPR032867	DYW domain

trEMBL

trEMBL term	Description
A0A1S2XYI5	_

SwissProt

SwissProt term	Description
PP430_ARATH	Pentatricopeptide repeat-containing protein At5g52850, chloroplastic

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G52850	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0080049148.01.T01	_
Oryza sativa L.	LOC_Os12g36620.1	pentatricopeptide, putative, expressed
Cucumis sativus L.	Csa010076	_
Glycyrrhiza uralensis Fisch.	Glyur000025s00003332.1	_
Codonopsis lanceolata	Cl_chr04_50390T	_
Arachis hypogaea L.	AH13G57950.1	Pentatricopeptide repeat-containing protein At4g13650 like

Expression pattern