Gene detail

Detail information of Am02G031790.1 Annotation

Gene ID	Annotation
Am02G031790.1	transducin family protein / WD-40 repeat family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G031790.1	mRNA	Chr02	178654279	178661024	+

Sequences

CDS:

>Am02G031790.1
ATGAGTGACCCCGGTTATCCACCTATTCACGATGACGAAGACGATAACGATGAGTTATTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCTTCGACAATGAAGAACTTCCCGACGCAGAAGATGATTCTGAATCCGAACATGATGACGAGATTGATGATTCTTTGCACATATTCACCGGTCATACTGGGGAATTATACTCAGTTGCCTGTAGCCCAAGAGATACAGCATTGGTGGCAACTGGGGGTGGTGATGACAAAGGATTTCTCTGGAAGATTAACCAAGGAGACTGGGCTTCTGAGCTTAATGGTCATAAAGATTCTGTATCTAGTTTAGCTTTTAGCTATGATGGAACGTATCTGGCATCGGGAGGCTTAGATGGAATTGTTCAAGTCTGGGATGCATTTGGAAATCTGAAAGGTTCACTGGAAGGTCCACAAGACATTGAGTGGCTCCGGTGGCATCCAAGAGGAAACGTAGTCTTGGCTGGTTCTGAGGATTCCAATGTTTGGATGTGGGATGCTGATAAACTAGCCTTTGGTAAAATGTTTGTTGGTCATGGAAGTAGTGTGACCTGTGGTGATTTTACTCCCGATGGGAAAATAATATGTACTGGTTCTGACGATGCAACCTTGAGAGTATGGAACCCAAAAACTGGAGAAAGCATTCATGTTGTGCGAGGTCATCCATACCATACTGAGGGATTAACTTGTTTATCAATAAGTTCAACCTCAATTCTTGCTCTTACTGGTTCCAAGGATGGATCTGTTCATATTGTGAATATCACTACAGGAAGAGTTGTTAATACCCTGGCCTCTCATTCAGATTCCATCGAGTGTGTTGGGTTTGCACCAAGTGGTTCCTGGGCTGCAGTTGGAAGCATGGATAAAAAAATGGTCATATGGGATGTAGAGCATTCCTTAGCCCGAAGCACTTGTGAGCACGAGGAGGGAGTGTTGTGTTTAGCATGGCTTGGCACATCGTATGTGGCTACTGGATGTGAGGGTGGAATTGTGCGATTATGGGATAGTCGGTCCGGTGAATGTGTCAGAACATTCAGGGGGCACTCTGCCGCGATTCAATCTCTTGCTTTCTCTGCTAATGGTGATCACCTTGTCTCGGCTTCTAGTGATGGCACAGCTCGTGTGTTTGAGGTTGAAGGGTTTCGTTAA

Protein:

Promoter(3k):

>AM02G031790.1
TTTGACTTATTCAAAAGGAGAAATAATAGCAAAACTTTGGAAAAAGAAATAAATTAAATTCCAAATATTGAACAAGTCAATACTCTCTCAGTAAAATAGTATAATAAATTTGTTTTCAACAAAATTGTTATTATTTCACTAAAATTTACTTAAAAACTTTTGAAATATCACAAAATATACAACGGTGTTATGTTAGAAGAAAGGTATTTTTCTATTTAACAATGAGAACTTAGGGGAGTTAGTGTCTATTTTAAAACTAGAGGTGTGTCTCTGTATCATTTAAAGAGACCTTAGGGGAGAATGGAGAAAAACTTAGGTGGAGTAATGATTGCGCACAACAATTATTGTTTCCACCATTTCGGTCCCTTCGAGTAAGTTTTTTAATTTTGACTAACCATTTTTCATTCATTGTGTTCTCCCTTTCCATGTCACTTCTTGTGTTGTGCACCTGTGCCAACCAATGTAGTCAAAATCGTGTGCTGGTTTGTAGAATCGCACGTTTTTGCGATTTTTGGTCACCTTTGCGAGTTCATAAGTGAGCAGGATCGTCGTTGGGTGAGAGCGGTGGAAGCGTCGTGCTGGTTCGCAAAAGCGCTGCAAGCGGCGTGCTTGTTCGTCTCTGGTTTTGGGTCAAAACACTGTGTTTCGAGTACCATTGCAGTGCTTTGCAGCGCGACTCTAGGAAGATGAAGCAACACACGAAAAAACCCTATTTTTTCACAACACACTGTTTCATTAAAACTATGTTTGGATGGTAAGAGAAAGTGAAAGGAAAGAAAGGTGAAGGAAAAAATGTTGAAGGAATGTAAGTGGGTGGAAAATGGGCGAAAAGTGGGATAATTTTTTAGTTGTTTGGTTAAGGTGAAAGTAGAGTAGAAAGTGAAGAGAAAGAAAGAAGTAATTTGCTAAATGACATAAATGTCCCTCAATAAGTTTTTTAATCAAATAAACTAGCTTTGGAAATTAAGCTTCAAAAATATTTTCTTGGTGAAAAAAATGCTTCGAAATATTTTTGTTTAACTCCTACATATATAAAAAAAATATTTGTCAAAAAAAAAATATATTTGTATTTTCATTATTATGTGTATTTGTTAAATAAACTACTATTTTACAAGTTTTTTTTATTTTTCTGTCAAAAAAACAAGATTTTTATTTTACTTCTTGTTCGAATAAAATTTGTTTAGTTAAAAATAAAATAAAAAATCATTTTCCTAAACTAACGCCATCAAAAGTGTATCTGAAATAGTGAAACATTAGCCCATCTATTCTTTGAATGTCTGTTTGCATACAGTTTGACAGGATGTTAAGAGGTGGACTAGTAGGCAACCAAAGACAGAGTTATCTGGGCTGGAGCATTTTATGTGGTATGGTGGTCTTGTAACAGGAAAACATTGCAGGAAATTCAAATTCTTGATTTGGCTAGCAACAGTTTGGGCACTGTGGTTGGAAAGGAACCGTCAAATTTTCCAAGAGAAGGTTTCTAATCATGAGGCAGTTATTAACAATATCAAACATATCTATTGGAATTGGTTTGCGGGTAGATTAGAAAAGAGATGTAATATGACGGTAGCCCAATGGTGAAATAATCCATTGATGTGTAAACAATATTCATCGGTATCTCTTGTATTGGGTTGGAGTACCCCTAGTACTCCTATTTAATACAATTTATCTTATCCAAAAAAAAACTTCAGATGCTGCCATAAAGATTAAAATGAAATAGAAGTTGTGTAAAATTATTTTTGCAAAAGAGGAAAAAATTGTGTGGATCAAATAAATGACTTTTTGGTCTTTTTATTTCCTCTCATTTATGCGAGGAATGAAATTTGACATGGTCGCACATAAAGATTTCTTTCCTCCTTCTTTTGGAAATTTTGACATGATCAAAACAATGGAAATATGGAATATCCATCTTTCCACTCTCTTTCTCTCCACTCACATTCTTTCCTTCTTCTTTCCTTAGAATCAAACATAGTGTAAGGGTACTTAGTATTTCCAGGTATTTTCTTTCAAAACGACGCGTTTCATTAAGTGAAATGAAAAAAACCCTAACAGTTACTGTTCTTCTTCCCCTTCCCTAACGCAAGACTTGCGAGAACGCAACGGCATCATCACCTGTGCTTTCATATTAGGCGACTGATTCTGCTCCTTCGTGTCTTCTACCATTCACAACTGATTCTGCTGCTCCTTCACGGCGCCTCTGTTCTTCCCCGTAAGTGACCTTTCTTCTTCTTCTTCTTCTTCTGTTAGGTTTTCTGTACTTCACTTCAGCTCCATCATTTCATCTCTGTTTCACTTCCGCTCCTTCATTTCATCTCTGTTTCTCGTTCCTTTCACATATTTCTTGTTCTATTTCGCTTTTGTTTGTTCCATTTTACAGAGGGAGTGAGCTCTCTGTTTCCCTTGTTAACTTGGTTACTTATTAGGTATTAGGTATGACTATCTTATTAGGATCTTGAATTGAAGCTAACTTATGGTATTTTATATGCATATATATGAATTTATATGCGCACATATATAAGATTGTAAAATATGTGACTCTTACGAATCATGTTATGATTCTACGAGTTACGATTCTTAGATTCGGTAGAGTCTCGAATTTAACTACCTTGGTGCCAACTCTTTCATTTGGTTGAAGAAGAAGAAAACTATTAAGATGACCATATGGTTTATATCCCTAACTTCAAGGCTACCATTAGTGATTATCTCTTAGAATATTGTTATGGCTGTGTTTCGTTAAATTGACAAATTTGAAGGCTAATCATAGGGATGTGTTAGCGACAGTTTACGGACGTGCTCCCCTCATTCTTGTATACATATGCTGACCTGCAAAGGATTAAAGACAGGGGAACAAATATTGTTCTTTCCAGAACTTATCTGTTTTTTTAAGAAAAAGAAGCTATTGGAATTTAAAAGTTATTTAATAACTTTCTCTTACTTTGTCCCACAGGTTTTAAGTACTGAAATAAATTATATTGATAATTAAGCGACTAGTGTACAGCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	101	134	6.50E-50
PF00400.35	WD40	183	216	6.50E-50
PF00400.35	WD40	347	384	6.50E-50
PF20426.1	NBCH_WD40	236	308	8.10E-22

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0005730	nucleolus	Cellular Component
GO:0042254	ribosome biogenesis	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:1990904	ribonucleoprotein complex	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR001680	WD40 repeat
IPR011041	Soluble quinoprotein glucose/sorbosone dehydrogenase
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A6A4NR98	_

SwissProt

SwissProt term	Description
AAMP_CANLF	Angio-associated migratory cell protein

KEGG

KO	Description	Enzyme
K24725	angio-associated migratory cell protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G71840	transducin family protein / WD-40 repeat family protein
Medicago sativa L.	MsG0180005324.01.T01	_
Oryza sativa L.	LOC_Os03g48090.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa005590	_
Glycyrrhiza uralensis Fisch.	Glyur000208s00014293.3	_
Codonopsis lanceolata	Cl_chr02_61470T	_
Arachis hypogaea L.	AH13G35280.3	Uncharacterized protein like

Expression pattern