| Gene ID | Annotation |
|---|---|
| Am02G031070.1 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G031070.1 | mRNA | Chr02 | 176026343 | 176033946 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00415.21 | RCC1 | 299 | 347 | 1.10E-75 |
| PF00415.21 | RCC1 | 351 | 402 | 1.10E-75 |
| PF00415.21 | RCC1 | 406 | 454 | 1.10E-75 |
| PF00415.21 | RCC1 | 468 | 515 | 1.10E-75 |
| PF00415.21 | RCC1 | 520 | 569 | 1.10E-75 |
| PF00415.21 | RCC1 | 574 | 621 | 1.10E-75 |
| PF08381.14 | BRX | 1044 | 1099 | 3.50E-29 |
| PF13540.9 | RCC1_2 | 337 | 361 | 3.30E-25 |
| PF13540.9 | RCC1_2 | 556 | 584 | 3.30E-25 |
| PF13713.9 | BRX_N | 878 | 913 | 3.80E-18 |
| PF01363.24 | FYVE | 625 | 690 | 8.10E-14 |
| PF16457.8 | PH_12 | 40 | 123 | 7.10E-07 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0046872 | metal ion binding | Molecular Function |
| GO:0016020 | membrane | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR017455 | Zinc finger, FYVE-related |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR027988 | Transcription factor BREVIS RADIX, N-terminal domain |
| IPR000408 | Regulator of chromosome condensation, RCC1 |
| IPR009091 | Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II |
| IPR001849 | Pleckstrin homology domain |
| IPR011993 | PH-like domain superfamily |
| IPR000306 | FYVE zinc finger |
| IPR013591 | Brevis radix (BRX) domain |
| trEMBL term | Description |
|---|---|
| A0A8B8M5P3 | _ |
| SwissProt term | Description |
|---|---|
| PRAF1_ARATH | PH, RCC1 and FYVE domains-containing protein 1 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G42140 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| Medicago sativa L. | MsG0780037895.01.T01 | _ |
| Oryza sativa L. | LOC_Os04g58960.1 | regulator of chromosome condensation, putative, expressed |
| Cucumis sativus L. | Csa019108 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000025s00003301.1 | _ |
| Codonopsis lanceolata | Cl_chr02_58390T | _ |
| Arachis hypogaea L. | AH05G35990.1 | Probable E3 ubiquitin-protein ligase HERC1 like |