Gene detail

Detail information of Am02G031000.1 Annotation

Gene ID	Annotation
Am02G031000.1	RNA-binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G031000.1	mRNA	Chr02	175736791	175741000	-

Sequences

CDS:

>Am02G031000.1
ATGGAAATTCTGTCTGTGTCTGTCAAACTCACCAAATTTCAATCCTTTCCTGCTCTAAAGCACCAAAGAACCCGAATTCAGGAACTTCCAACAAACATAAGACTACCCAACAGAAAGAATCTTTCTAACCTTTCTTCTTCTTATTCCGTTTCATGTAATTGCTCTTTAACTAGGGCATCAGAAACAACACACCCTTCCTTGATTTCTTCCACCACAAAAAATCGCTATTGGATGGTGCTCATGGACAAGCCTCCTCATGAGGTTAATTCCAAGGCACAAGTCATCGATTATTATGTGAAGACTCTTCAGACAGTTCTGGGCAGTGAAAAAGATGCTCAAATGTGTCTCTATGATGCTTCCTTCGATGCACATTTTGGTTTTTGCTGTGACATTGATGAAGAAATAACCTCCCTGCTAGCTTGTTTACCTGGGGTATTATCCGTTAGACCTGATCCGGATTTCAACTCTTCGAAAAAGGACTATAGTTTATCAAGTGGACAACCATCAAGTTTACAAGATAGAACCAATATGTTGTTCCCTGCGGGAAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCTGGGGTTGGGGTTGTCACCAAAGCTCAGATTGTTGATCACCATGCTCAAATTTTGACCAAGATCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCTTGGAAAACCAACTTTGGCTTTTGTTGTGAACTCGATGAGGATTGTGCACACGACCTAGCTGGTGTTCCTGGTGTCTTATCAGTTCAACCAGATGACAATTTTGAGTCTGAAAATAAGGATTATGAAGGTAGTAACTTGGAGAATAGTTTGAATGTGCTAAACTCTTCTGAAGCAAATCAGGAAGCTTCCTTGAAAACAAAGAAACTTTTTGTGACGGGACTATCATTTTATACATCCGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACTACAGAGGAGGCTGCAAGTGCAGCACTGAAAGAGATGAACGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTAACCCACCGAGATACAACAGAGGTCGCGCCAGACCATCAGCTTGA

Protein:

Promoter(3k):

>AM02G031000.1
TTCAATTTCTTGTTTCTTGAATAACTCATGCAATACACGACCAAATTGAATGAAACTGGACTCTAACTTGAATAAAATTCCGCAAGGAATTCAATGGAACCAAAATTAAGCTCAGAAAAGTGCTTATGCACAAAATCACTTCTGGAATCGAAATCTTGAATTTGAAGTTCAAAAAACATTCAATCTCAACAATGGTAATTTTGCTATAGAGCGTCATATTGAACGATTCTTGAGCCTAAAATGCTCGAAATTCAACAAGGAGTCAAAATATGGCAAGCATTTTATTTAGAAAAGCACTAAAATACAAAATACCATGAAAAATCAATCCGCATCTCTAAAACGTGTTTTGACTCTTATTTGCTCATTTCTCAACCAATTTGCGTCAAACCAATTGCGTTCAAATCGTATTGAGTGCAGAAATTGAACTAAAGCAAAAGGTTTCAACGAAAACAATGCAAATTCGAGAACGATGTGAAAAACAGAAACACGAATGAAAGTTTCTTTTTTTCTCATCGCTCTCGAATTTGCATCGTTTTTATTGAAACCTTTTGCTATAGTTCAATTTCTGCACTCAATACGAGTTGAACACAATTTGTTTGACGCAAATTGATTGAAAAATGAGCAAATAAGAGCAAAAACATGTTTTATAGATGCGAATTACTTTTTGACAGTGTTCGCGTTTTACGCGCTTTTATGAACAAAATACTTGACATATTCTATTTTCTTGTTGAATTTTGAGCATTTTAGCCTAAAAAATCGTTCAATTTGGTGCTCTATAGCAAAATCACCATTGTTGAGATTTGAAGTTTTTTGGGGATGGAGTATTTTTTTGGGGATTTGAAATATTTTAACCTAATATTTTAAGCTAAAATGTTTAAATTCCCCTCAAATATAATAGGCTTAAATATATGTTTAGTCCCTGCAAATATGGCAAAAATCCATTTAAACGTCCCCTGCAATTTTTTTTTTAAAAATGACCCTTACAAATATTAAACGTTTGCGGTTAAGCCCCACGGTCAACTTTCCATAAAAAAAACATTAAAATGATAATCAATGCCACGTGTCACTGAATGCCACGTCATCACCTCATGTCACCGCTGCCACGTGGCATTGACATTTGCCACGTCGCAGCCAATGGATGGCTGCCACGTGGCGCTTGCATGACAATAATGTGGGGCACCTTTGTTACCAAAAAAATTTAACATTTTGAAGGAACATGGGTGTTGAACCCATGACCCTAAAATGGTTGAAACTTACAAATACCACTAAGCCACTTGATTTTTTTGGTAAGTTAAGTCAACTACTAGTATATAATACATAAATAATTCGATTAGCAAAATAAAAAACCAAGATCTTCATCTTCCACATCTATAACCAGCAAATCTGGGAACAACATCTTCCACAAACACCAACAGATCTTGAACACAAACATAAACACCAACAAATATGGGAAAATCGATTCTGCAAACACCAACAAACACTGAAGTGGGAAAATCGAATCTGCAAACACAAACACAAACCCCAACAAAATCAAATCTGCAAAACGAAGTGGGTTTCGAATCTGCAAAACGAAGTGGGTTTCGAATCTGCAAAACGAAAAGGAAAATCGAAAAAAATGAAATACATGAACGAAATTTGATCAATCTGCAAAACGAAATTCGAAATCCAATGAATCTAAGAACGAAAAAACAAAATTTGAATTTGCAGAAAACGAAATTTGGGTTTGAACTGAATCTAGAAAACAAGATGACTGAGATTTCGTTTAATTTTAATGGCATATGCATTCTATTTCAATTTCTGCGTTCTATAACAAGTTAACAACAGATTTAATGGATGGAAATCAAAACGAAATGGACGAAATCAGATTTAATGGATATTTCCAGATTTAATCGTTGAACTTTTGGTGGGTTTCGTTTTTGGCTCAGGAAGATCTGACGAAGATATGCGTTTTCTAAGTAGATCTGATATATTAAACGTTTAGTTGGAAAAAGTGAAGATCTGGTTTTTCAATTGGAGATGATGATAGGAAGAAGATCACAATGTGTTTGCTCTTCAGATTTTTTATTTTTTTTCAAAATTAATAACATAATATATAATGTTTGTTGGCTCTATTTATAAAAGTTAACATCAGGTGCAATGGTAATTTGGAGTGTTTTTCACCATGAGGTCAATGGTTGAAATCTTTCTCAAGCCATTTCCAAAATTTATTTTGAGTGTAATAACTAGTGCCACGTGGCTGTCATCCATTGGCTGCTGATGTGGCGTTTAATGACACGTGGCATAATGGTCCTATGAGATGGTGACACGTGGCATTGATTATCGTTTTAATGTTTTTTATTTGGAAAGTTGACCGAGGGGCTTAACCGCAAACGTTTAATATTTGCCAAGGTTATTTTTAAATTTTTTTTTCAGGAATTTAAATGAATTTTGGTCATATTTGCAGGAGCTTAACATATATTTAAGCCAATATAATATTACCCTCAAAAATAGATAATTCAAACACCTTAATTGTAATGGATAAAGTCCATTAGAAAATGTTGGAGATATTTTCTCTAACACCTTGAGTTTTGACAGACTCTAAGAACTAAGAAGCACAAAATAGGCTAAAGTGCTTTCGGGGTCCCTTATCTTTATTTAAAGTAACGATTTGGTTATTTATCATTTTTTTCTGCCAAATCTGTCTTTTATGTTTTAAATTTTTGACACATAAATCCTTTTCTGTCCCAAATTAGTCCTTTATATTTCAAATTTTTGACACATAAATCAGCACTGTTAACGGAAAAGGATTTATGTGTCAGAAATTTAAAGGATAAAGAACTTATTTGAGACAAAAAAATATAAAAGACTAATTCGTTACTTTAAATAAAGATAAGGACCGAAACGCTTTGCCCAACAAAATAATAGTGGCGCTGGTATTAGATAACTGTTCGAAGTTTGCATTGCCATTGAGAATTGAGAATGTATTACAGGCACTGAACCCTATCGAATTGTGACACTAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	299	365	1.70E-20

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0080156	mitochondrial mRNA modification	Biological Process
GO:0022857	transmembrane transporter activity	Molecular Function
GO:0006397	mRNA processing	Biological Process
GO:0016020	membrane	Cellular Component
GO:0055085	transmembrane transport	Biological Process

InterPro

InterPro term	Description
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR037045	Peptidase S8 propeptide/proteinase inhibitor I9 superfamily
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR039206	MORF/ORRM1/DAG-like

trEMBL

trEMBL term	Description
A0AAN9M1F5	_

SwissProt

SwissProt term	Description
ORRM1_ARATH	Organelle RRM domain-containing protein 1, chloroplastic

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G20930	RNA-binding (RRM/RBD/RNP motifs) family protein
Medicago sativa L.	MsG0180005061.01.T01	_
Oryza sativa L.	LOC_Os02g49820.1	RNA recognition motif family protein, expressed
Cucumis sativus L.	Csa008919	_
Glycyrrhiza uralensis Fisch.	Glyur000383s00019463.1	_
Codonopsis lanceolata	Cl_chr02_07150T	_
Arachis hypogaea L.	AH11G31450.1	Uncharacterized protein like

Expression pattern