Gene detail

Detail information of Am02G030430.1 Annotation

Gene ID	Annotation
Am02G030430.1	RAB GTPase homolog C2A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G030430.1	mRNA	Chr02	174075730	174079028	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM02G030430.1
TAACTGAATTGTGAAGAGTGAATTGAACATTTCATCTTATTGAATATTCTGAACTGTGTTATAGTGTTTATACAAGTCTATGCAAGCTGACTAGTCAATGCTGAGTCAACTGCTGATGTGGCAAGAACTACTTGATATAACTACACTATATTGATTCAATTATTACATTGTGTATTTATCTCTATTATCTGCTAGTGTGTATGCGAAAATAATAGAAAGAAGTGATGAGAGATTAAAAATATTCTTACTAAATTTGAAGTGTTACATAGTATAAACCGTTAAATTAGAACATTTAATTATCAACAAAGATTAAAATTCATATTTCAGACTATGTCATTAATTACAAAAAAACATTTATTTATCAACAAAAATTAAAAATTCATGGTTTAGATTACGTTATTAATTCATAAAATCTAACATTAAAATCTTATGCGACAATATTAATTAAAAAACAATATCATATAAAATTTTATAATTAATAACGTAGCTTAGACCGTTAATTTTAAATTGATAATTATAATTTAATATTCCCATTTCTTATATATGTCAAATGTTTTCACCCGAGTTGTCTATATATTGTAGACCACCTTTAAAGATGGTTCATGTTATGGATTGGGCCTCAATGGCCAATCTACCAAAAAGGCCCAACAGCAAAGGTCCAATTCATCCAACGGTGGAGATTGCAGACCTAGATCCAACGGTCCTCCTCTATCCTAGATACCTATAAATAAGCATTGAATGCTCACATTAATGGTACTCATCTCTCATCTACTCTCACTTGTAATTGACTCACTCGCTGACTTGAGCGTCGGAGTGTCATTGCAGGTACCTCCCCACCTCGGATCGGAGCACCAACTCGGACAACCAAGGACACACGTACCAACTATCTCGGACCGGTCTACCTATCCCAGGTCGGATACGTAGCAGGAGATACGGTACCAAACAGTTCACAATATCAAGCCTAAAAGGCTCAACTTTTAATATAGCCTATTTCGCTGTTATTAATCATTACACTGAGGAGTAGATGATTCAATTTTTTAAAAAATTAATTCATATTCCACAAAATGTGGGTGAAGTGGATGGTTACGTGATTGAAGTGTGTGAGGTATTCAATACCGGTGGTGAATGGGGAGAGATTGACTCAATGGACCTTTGAGAAGGTAAATTAGGCAAGGTGTCCCACCGTCTCCTACCTTATTATCATTTTGCCGAGGAAATAACCACTCTTATTAAGTGAGTTGAGACTAGAGGAGAGACATCCACAACATCAAAGCTTGTAGCGGGGTAAGATGCTGAGAAGAAGTGCTTGGTATGTGGGATTTTATCAAGGGCATGCATGGTAGAATTTAGAAGTAGTCAACAGGTTCAAAAAAACAACAATGTTAAATATGTTGCTAGAGTTACCAACGCACTAGAAAATTGGTATTGCATTGATGTTGTTGTGTATATGGCGTAGAAGAAATGTGTGACATGGGAGGGAGTTTATGCAGGTGACAGAACTGGTCCTAATATTTTGGGTGCCATGAGCGAACTAATAAAAAGAAAAAATAAACACGAAGACTTAAAGCCTTACAAACTCAACACATAATGCATCAACAACAAGAAGATTAGCTTGCTCCGTAGGAGGAGTAGACAAAACTGAAATGGAAGTATTCCTATGAGCAGCTTAGCCAAAAAATCTGCACAAGTATTACCCTCTCTTAGGGCGTATAAAATGGTGCCTTAGTAATTATTTGAATATCATCCTCATTGCATTTTTATTGAAAATGATTAATGATTTGTTCATAATAAAAGTTTTTTTAAAAAAATTCTTTCCAGTAGAAATTAAAGCGAGACTATTTAATCTATTTTGCGACACAGTAAATTTGTAAATAAGATTTTAACAATTTCAATTTTAAAAAAAAAACTTATTTTCAGTAATAGGAATAGTTTATATATATTTTTATATATGTATGTATTGGAAAATAATTAACCATATAAAATAGAATTTCACATCAAGATCATAAGAATCATAATATTTTAGGAAAATCTAAGAAAGTTAGCAATATAATTCAAGTCATTATATATGTGTGTAAAAAAGTCTCAAAATTTTGTTGGTACATAATATTAATAAAAGATTTCGTTTACTAATTACAAATTAAATCTAATAAAATAGAGTTAAAATTATATTGAATCGAACATTAAGGTTTGTATTATTTTATTATCTTCTAGGCCTCCTCGCTTTAGAGTTCGCTTTAGACGTGTTGGGCTGGACTTGCAATCACTATTTTATTTTTATCTTTAATGAAAAGTTCTCATTAATCCCGGCGAATTCAAATGCTAATATGGTGGGGAAATTTTATTTGGATTTATAGTTCACTTTCGTTAATCTCAAGGTTGAGTGCGAGTGAATAACACACTTCATTTAAAGGGATGCATTCGCACGGTTAGTACCCTCAATGATAAAACAACTTAATGTTAGACTTTACTTATCTCCTAATCGAACTTCAGATTAATCCAACCTCTTTCCCTGAGATTAAAAACCACTAAAAGATAGTTAACTTTCCTTACAATCCATCACAATTGTGATCAATATTTTTTATTCTTACCTTAAATAGGTAATAAGAGTGAGTAGTAGTCAGCATAGATAATTTAATTAGTGAAGATATTATCCATCATTTGATGTCGGTCCGTTACTGATTACTGTTCGTAGCATTGAGTGAGATGGAGACAATAACATTATTAGTGGCCGGCACCATTAAAATACAAGAATATCTTCTTCATTTTCATGTTGTGTTGTTGAGGGGAAGCAAGAGCACAACAAGAAACGGCGCGTGGACTCAACTCAACCCAAATCTATAATATTATAAAATAGGACATTTGTCCTAACCAAGTTGATTTACTAAGACCAAACCAAACTCTCAACCGCCTCGACTACTTGCCAACCTCACCTTCTTGTTTCTCTTTATTGATAGATTGATAAAATCATAATCACGAATGATCATCATGGTGGAATGATAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00071.25	Ras	24	187	2.70E-53
PF08477.16	Roc	24	141	2.90E-30
PF00025.24	Arf	20	183	1.10E-14
PF01926.26	MMR_HSR1	24	113	2.60E-06
PF04670.15	Gtr1_RagA	24	144	8.20E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016192	vesicle-mediated transport	Biological Process
GO:0005794	Golgi apparatus	Cellular Component
GO:0005525	GTP binding	Molecular Function
GO:0015031	protein transport	Biological Process
GO:0046907	intracellular transport	Biological Process

InterPro

InterPro term	Description
IPR005225	Small GTP-binding protein domain
IPR001806	Small GTPase
IPR027417	P-loop containing nucleoside triphosphate hydrolase

trEMBL

trEMBL term	Description
A0A9D4WCB1	_

SwissProt

SwissProt term	Description
RAC2A_ARATH	Ras-related protein RABC2a

KEGG

KO	Description	Enzyme
K07910	Ras-related protein Rab-18

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G03530	RAB GTPase homolog C2A
Medicago sativa L.	MsG0780041016.01.T01	_
Oryza sativa L.	LOC_Os03g05280.1	ras-related protein, putative, expressed
Cucumis sativus L.	Csa004701	_
Glycyrrhiza uralensis Fisch.	Glyur000177s00010904.1	_
Codonopsis lanceolata	Cl_chr07_27230T	_
Arachis hypogaea L.	AH19G29670.1	Ras-related protein RABC2a like

Expression pattern