| Gene ID | Annotation |
|---|---|
| Am02G030120.1 | Transducin/WD40 repeat-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G030120.1 | mRNA | Chr02 | 173387746 | 173395116 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF04564.18 | U-box | 511 | 581 | 3.70E-15 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | U-box |
| GO term | Description | Category |
|---|---|---|
| GO:0003924 | GTPase activity | Molecular Function |
| GO:0009877 | nodulation | Biological Process |
| GO:0005525 | GTP binding | Molecular Function |
| GO:0007017 | microtubule-based process | Biological Process |
| GO:0007010 | cytoskeleton organization | Biological Process |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR001680 | WD40 repeat |
| IPR003613 | U-box domain |
| IPR045210 | PUB protein, U-box domain, plant |
| IPR016024 | Armadillo-type fold |
| IPR011989 | Armadillo-like helical |
| trEMBL term | Description |
|---|---|
| A0A1S2XXK3 | _ |
| SwissProt term | Description |
|---|---|
| LIN1_LOTJA | Putative E3 ubiquitin-protein ligase LIN-1 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G06880 | Transducin/WD40 repeat-like superfamily protein |
| Medicago sativa L. | MsG0480023837.01.T01 | _ |
| Oryza sativa L. | LOC_Os01g12930.1 | U-box domain containing protein, expressed |
| Cucumis sativus L. | Csa002337 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000095s00007026.1 | _ |
| Codonopsis lanceolata | Cl_chr01_28050T | _ |
| Arachis hypogaea L. | AH09G23110.2 | Putative E3 ubiquitin-protein ligase LIN-1 like |