Gene detail

Detail information of Am02G028780.1 Annotation

Gene ID	Annotation
Am02G028780.1	beta-xylosidase 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G028780.1	mRNA	Chr02	169397273	169401654	+

Sequences

CDS:

>Am02G028780.1
ATGGATTCCATATTATCATCCCTCATCACCATCTTCTTCTTCCTCTTCTTTGTTAGTAGCTCGGCACGCGATCCTTTTGCGTGTGATCCGAAGAACACCGCGACAAAGAACTTGCCATTTTGTAAGGTGTCGCTGGCCATACCAAGGAGGGTGAATGATCTTATTGGAAGGTTGACATTGCAAGAAAAGGTTAACTTGCTAGTGAATAATGCAGCTGCGGTTCCAAGACTTGGTATCAAAGGCTATGAATGGTGGTCTGAGGCACTTCATGGGGTTTCAAATGTTGGTCCTGGAACAAAGTTTGGTGGCCAATTCCCAGCTGCCACTAGCTTCCCTCAAGTCATCACTACTGCTGCTTCTTTCAATGCTTCTTTGTGGGAAGAAATCGGACGGGTTGTGTCAGACGAAGCAAGGGCAATGTACAATGGAGGAATGGGTGGGCTGACATACTGGAGCCCAAATGTGAACATTTTCAGAGACCCACGATGGGGTCGTGGACAGGAGACTCCCGGTGAGGACCCAATGCTAGCCGGTAGATATGCAGCTAGTTATGTGAGGGGACTACAGGGAACAGACAGTAACCGGTTGAAGGTGGCTGCTTCTTGTAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCAAAGGTGAGCAAACAAGACATAGAAGACACATTCAATGTGCCATTCAGGATGTGTGTGAAAGAAGGTAAAGTGGCAAGTGTAATGTGCTCTTACAATCAGGTTAATGGTGTCCCTACCTGTGCAGACCCTAATCTCCTAAAGAGAACAGTCCGTGGCCAATGGCGTCTTGATGGGTACATTGTATCAGATTGTGACTCAGTTGGAGTATTTTACAGTAGCCAACATTACACATCAACTCCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGTCTGGATTTGGATTGTGGGCCTTTTCTAGGATTACATACACAAAATGCCGTCAAGAAAGGCCTAATAAATGAAGCTGATGTCAATGGTGCCTTAAGGAATACGCTAACAGTCCAAATGAGGTTAGGGATGTTTGATGGTGAAGCAACAGGTCAACCATATGGAAACCTTGGTCCAAGAGATGTGTGCACCCCAACTCACCAAGAGCTAGCCCTTGAAGCTGCCAGACAAGGGATTGTGCTTCTTAAAAATAATGGTCCTTCTTTGCCACTCTCCACCCAGCGTCACCGCACCGTGGCTGTCATTGGGCCCAATTCCAATGCCACTGTGACTATGATCGGAAACTATGCTGGTATTGCATGTGGATACACAAGCCCCTTACAAGGAATTGGGAGATACACGAGGACAATTCACGAGGTAGGTTGTGAAAATGTGGCGTGCACTAATGACAAGCATTTTAAGTCGGCTCTAGATGCAGCCCGTCAAGCAGATGCAACGGTTCTAGTGATGGGACTAGACCAGTCAATTGAGGCTGAAACTGTGGATAGGGCTGGCTTGCTTCTTCCTGGCCATCAACAAGACCTCGTGTCAAAGGTAGCAGCTGCATCTAGAGGCCCAACCATTTTGGTCTTAATGTCTGGTGGACCCATTGATATAACTTTTGCCAAGAATGATCCTCGAATCATAGGCATCTTGTGGGCTGGTTATCCCGGTCAAGCTGGTGGTGTTGCCATTGCAGATATCTTGTTCGGAACTGCTAACCCAGGAGGCAAGCTACCAATGACATGGTACCCACAAGGGTACCTTCAAAACTTGCCAATGACAAATATGGCAATGCGAGCAAGCAAGTCAACAGGATATCCTGGGAGAACATATCGATTTTACAATGGTCCAATGGTTTATCCATTTGGTTATGGATTATCTTACACCCACTTTGTTCATACATTAGCTAGTGCTCCCAAAATGGTCTCAGTTCCTATGGATGGACACCGTCGTGGCAATAACTCAAACATTTCAAACAAGGCAATTAAAGTGACACATGCACGATGTAGCAAGCTTTCCATTAGCCTTGATGTCGATGTTAAAAATGTTGGCTCCAAAGATGGAACACACACTTTGTTGGTGTTCTCAACACCACCTGCGGGTAAGGGTCAATGGGCACCGCACAAGCAACTAGTGGCCTTTGAGAAAGTCCACGTTCTTGCTAAGGCTCAACAGCGAGTGCGAGTCAATATTCATGTTTGCAAGCTCTTGAGTGTAGTTGATACATCTGGGACTCGGAGAATTCCTATGGGGGAACATAGTCTTCACATTGGTGATGTTAAACACTCTATATCACTTCAAGCAGAAACACTCGGGATCATCAAATCATAA

Protein:

Promoter(3k):

>AM02G028780.1
CTCAGCAGATTCCAAGTCGGCGTTGAGGGTGATGATTTTGTTGCTGAGAGAATAGAATTTCATCTTCAGGTGGACTGTGGAGGTTACCGCTCCGAGCCTTCCGATTATGCAGTTGTAAATAGAGGGACAAGGAAAAACGAGGAATTTGGTTTTAACCGTTCTGATCATTGGTTCTTCTCCATAAGTGACCATTGTCTCTAGATAACGAAGTGGCTTGATTCGGGACCCGTTGAACCCAAAAAGGTTTGTTCCTCTGTAAGGAGTGAGGTCTTCTTTTGAGATTTCCATTCTTTTAAGGAGGTCAACAAAGATGAAGTCTGTCGAGCTTCATTGATCCACCAAGACCCTTTTTATCTCCAGATTGGCCATTACGGCTCTGATCAGTAGAGTCACATGTTTGTTGGGCTTCCTGTCCAGCAAGTCTTGGTCCCCAAACGCCAAAGGAGGTCGGCTCGGTGAATCTGGAGAAACCGACGTAGAGGCTACGCTCAGAATTTCCTTCCACTTTCTCTTCATGGTTTTTCCGGACGCTTCACTATAAAAACCTCCCGAGATAATCATCCTCACAGGTCGACCTTTAGAACTTCAAAAATCTTGTTCGTCTTCCGAGTTTTCCTCCTTGGCTTTGCCCTTCTTTTTAGGGCCGCCTCTTTCTTCCTTGACATCGTCTCCCTGCTGAGAATCTTTCTTAACATAATGGCTAAGCTTCCCTCTTTTGATAATGTCTTCAATATCGTCCTTCGATGCGTTGCAGTGATTGGTGTCATGACGGCTGCTTCGGTGATAACGACAGTATTTGTTGGAACGCTGTTCCAGTCGATGGTGGAGCGGATTGGGAAACTTAACGTCCCTAAACTCGGTGTTCATGCAATCACTTAGAATTTTAGCTCTGGTTTCATTAAGATCGGTATACACCTGATGACGATTACGGGGCCTGGACTCCCTGTCATTCCGGGTCTCTTTGTCGTTTCGATTATCTTTTTCGTTTCAGGGTCTTGACGTTATGGGCTTAATGATTGCTCGACCTGTGTTGAGTCCTTCTTCATGATCGATGAAGCATTGAGACCTCTGGAGGAACTCTGCGATTGAATCTTTCAGTGTAATCTCGTAGAGGCTCATTCTCACCTTGCCGAATGGCTCCCAAAATTTTCTTGTGTTTCAGCTTGCTTTTGGAGTGAGCAAACTAAGCAGAGAAGAGTTTGGCCAGTTGATCCCAGGAAGATATAGTGTTTGGTTTAAGGGACCTAAACCAATCCGAGGCTACCTTCTCAAGAGTGAGGGGGAAAATTCGGCACTTCATCTCCTCTGGGACATTTCGATATTGCATTACCGTATCGAAATAGTCGAGGTGGCGGTCAGGATCGCCTGTCCCCTCATGCAATTTTAAACCTTCGAGGGGTTTTTCGAGATGCCTCGGCACTGGATAGTAATCGATCTTAACCGTAAAAGGTCCTTTGCGACTTGCCGTCTTCTTTCGGGCTGGAGACCGGCGATAATTGTATTTATCTGGAGATCTCCGCGAACGAGGATGAGGTCGTTCCAACCTCGGGGATTTTTCCCGGCTTCTGGAACGTCGTCTCGAGGAGGAGGATGCTAAAGACGAGCTATGATGAGGAGAGCATTCAGGGTAATAGTTTCCATCTTGAGTTCGACTTGGAGGAGTATGGGATCCATATCCCCCTTGTCGGCGAGGCGGGGAGCGGTGTTGATGCCTTCTCCATGTGGGAGATCTGTGGCGTCTCCGGCCGTGCTTCTCGCATTGGGGTGAAGTTTGATCCGGGATATTCCGAGCCCGGAGTTCCGCGGTTTCGGCTTCTAGCTTCGTGAAACGGTAACTGCGTTGCTGATCAATCTCGACGTGCCGATTTAACAAGTGGACGAGCTGTTGAACAACATCGATCGGTATCGGGACTGATTGAAGAAGAGGAGGAAGTTGGTTCCGGGCCGAGTTTCCGGAGACCAAGGGTCGTGTCGAGCTTTCAAAAATTAGAGCCTGTGCCGAGGTTTGGGCACGGGATGAGTTCGGAATCGTAATAGCCACTCCTTCTGGGGTGACTCGCTGCAAGATGGGTTGTTGGATGGGTAATTGGACCGATTGAAGGACCAGTCCTTCAACGACACTTGTGATTTTGGGTCGTAACTGGGGAGGCATCGTCGATCAAGGAAATGGGAGAGGAACTAGAGTAAAAGATCTCCCACTGTGGTCGCCAATGTTCGGTACCGTATCTCGGAGTGTATGGACGATCCGGGATAGTTGGTAGTAGTAGGTCTTGATCGATAATGTTCCGGTCTGAGATGGGGGAGGTACCAGCAAAGACACTCCGACGCTTAAGTCAGGTAAATAGTCAAGTACAAGTCAGAATTTGGTGAAATAGTGTATACCTTAAATGCTTGCATAGAATGCTTATTTATAGAGTCAATGTGAGTTTTGACCTAATTGATCAGAGCCGTTCGATCTAGGATTTAGATCTGAGCCGTTGGTTATTGTGTTGCTTTTGGTAATGAGCCTCATTGTTTATGGATTGGGCCCAATCCATAACAACACTTAAAGAATTATAAAGTTCACAACACCAACTTAAGATTAGAAATGACAACAAACAAAAGCTGGTTTCAATTTTACAAAAATTGTAAAAACTTGAAACTAACAAAAATAAGGTCAGATAAGGCTAATTAGCCAAGCAAGTAACAACATGCTTATTGCTTAGGATTAAAAAAGTGCACACGGCAGGTAGATTCCCTCGGTTGTTAATTTTATTGTTAGTCACCTACTTTATATTGAAATCTCACCAGCTAAGTTGCTTCATTTCTTAAAAACTCTTAGTTCAACAAAGAAAAAAGAAAGATATAAATATATAATAAAAAATTCAATGATCAAAGGGCCCGCAACATCAAATAGTGGCATTTGCAAACGTCACCACCTCATCTATATAAATTGTTCCCTCCATTCCATAACTTGTCAAGCATACTCCCACATTCATCTTAATTCTTATCTTATCCCAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01915.25	Glyco_hydro_3_C	392	622	1.00E-53
PF00933.24	Glyco_hydro_3	104	350	9.80E-39
PF14310.9	Fn3-like	685	753	4.10E-11

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH3

Gene Ontology

GO term	Description	Category
GO:0009505	plant-type cell wall	Cellular Component
GO:0046556	alpha-L-arabinofuranosidase activity	Molecular Function
GO:0005576	extracellular region	Cellular Component
GO:0031222	arabinan catabolic process	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR013783	Immunoglobulin-like fold
IPR036962	Glycoside hydrolase, family 3, N-terminal domain superfamily
IPR001764	Glycoside hydrolase, family 3, N-terminal
IPR017853	Glycoside hydrolase superfamily
IPR036881	Glycoside hydrolase family 3 C-terminal domain superfamily
IPR002772	Glycoside hydrolase family 3 C-terminal domain
IPR026891	Fibronectin type III-like domain
IPR044993	Beta-D-xylosidase

trEMBL

trEMBL term	Description
A0A8B8MGP1	_

SwissProt

SwissProt term	Description
BXL2_ARATH	Probable beta-D-xylosidase 2

KEGG

KO	Description	Enzyme
K15920	xylan 1,4-beta-xylosidase	[EC: 3.2.1.37]
K05349	beta-glucosidase	[EC: 3.2.1.37]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G02640	beta-xylosidase 2
Medicago sativa L.	MsG0280007882.01.T01	_
Oryza sativa L.	LOC_Os11g44950.2	glycosyl hydrolase family 3 protein, putative, expressed
Cucumis sativus L.	Csa003071	_
Glycyrrhiza uralensis Fisch.	Glyur000472s00019581.1	_
Codonopsis lanceolata	Cl_chr06_38420T	_
Arachis hypogaea L.	AH09G10720.1	Probable beta-D-xylosidase 2 like

Expression pattern