Gene detail

Detail information of Am02G028140.1 Annotation

Gene ID	Annotation
Am02G028140.1	Albino or Glassy Yellow 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G028140.1	mRNA	Chr02	167712931	167724651	-

Sequences

CDS:

>Am02G028140.1
ATGGCAGCGTCGTCACTTTGTTCCTCTTTTACCTCCACAACTTGGAACCCGCAAGAACTTCATCATCACCGTAAAACCCTAACCCTAGCAGGTTCCTCTTTTCTTCGCGGAGAATTTCAGCTCCATTCAGCGCCCGTTTCCAAAACACACAGAAGCAGGAGGCGCCGGTCCAGTGCAGTAGCCTCAATCGGAGGTTTGTTAGGAGGTATCTTTAAAGGCAACGATACCGGAGAAGCTACAAGGAAGCAATATGCTGCAACCGTTAACCTTATCAATAAATTGGAACCGGAGATTTCGGCACTTTCGGATTCGGAACTGAGGGATAAGACTTTCGCACTTCGTGAACGCGCGCAACGGGGAGAGACCTTGGATTCTCTCTTGCCTGAGGCATTTGCTGTTGTAAGAGAAGGTTCGAAGAGAGTTCTAGGCCTTCGTCCATTTGATGTTCAGCTAATAGGGGGCATGGTTCTTCATAAGGGAGAAATAGCTGAAATGAGGACTGGAGAGGGCAAGACGCTGGTTGCCATTTTGCCAGCTTATTTGAATGCCTTAAGTGGGAAGGGGGTCCATGTTGTTACTGTCAACGATTATCTGGCCCGGCGGGATTGTGAATGGGTTGGTCAAGTTCCACGCTTTCTTGGATTGAAGGTTGGCCTCATCCAGCAGAATATGACAAGTGAGCTAAGAAAGGAAAATTACTTATGTGACATAACATATGTGACTAATAGCGAGCTTGGTTTTGATTACTTAAGAGACAATCTTGCCACGGAAATCAATTGCTATGCTTTTTTTAATATCACACTGAACTCCGAACTATGGCATGTGCAGAGTGTTGAGGAGCTTGTCATAAGGGGTTTCAATTACTGTGTCATTGATGAGGTTGATTCAATCCTTATCGACGAAGCTAGAACTCCACTCATTATATCAGGACCTGCAGAGAAACCCAGTGATCAATATTATAAGGCTGCAAAGATAGCAGAAGCATTTGAACGAGACATACATTACACTGTGGACGAAAAACAAAAGTCAGTTCTAATTTCTGAACAGGGTTATGAAGATGCTGAAGAAATTTTAGCTGTCAAAGATTTGTATGATCCACGAGAACAATGGGCTTCATATGTCCTAAATGCAATAAAAGCAAAAGAGCTATTTCTTCGAGATGTAAACTACATAATTCGCGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTAATGCAGGGGAGAAGGTGGAGTGATGGACTTCACCAAGCAGTTGAAGCGAAGGAAGGGTTGCCTATTCAAAACGAAACCGTGACACTGGCTTCTATTAGTTACCAGAATTTCTTTCTGCAGTTCCCAAAACTCTGTGGTATGACTGGTACTGCAGCAACAGAAAGCACAGAATTTGAGAGCATTTATAAGCTCAAAGTTACAATCGTGCCTACAAACAAACCTATGATAAGAAAGGATGATTCTGACGTAGTTTTCAGGGCAACTTCAGGGAAATGGCGCGCAGTTGTAGTGGAAATCTCTAGAATCCACAAAACTGGTCGACCAGTGCTTGTCGGCACCACCAGTGTTGAGCAGAGTGATTCTTTGTCTGAGCAATTGAAAGAAGCTGGAATTCTGCATGAGGTTCTAAATGCAAAACCAGAAAATGTTGAGAGGGAAGCAGAAATTGTAGCACAGAGTGGTCGTCTTGGGGCAGTGACAATTGCTACCAATATGGCTGGTCGCGGGACTGATATAATCCTTGGTGGTAATGCTGAATTTATGGCACGGTTGAAGCTTCGTGAGATACTGATGCCAAGAGTTGTTAAGCCAGCTGAAGGAGTTTTTGTATCAATAAAGAAACCTCCTCCCAATAAGACATGGAAGGTGAATGATAAGTTGTTTCCATGCCAACTATCAAACAAAAATACTGAGTTGGCTGAGAAGGCTGTGCAATTAGCTGTTGAAACATGGGGCAAGAGATCATTGACTGAGCTTGAAGCAGAGGAGCGACTATCCTATTCCTGTGAAAAGGGCCCAGCCCAAGATGAAGTCATTGCCGAGCTGAGAAATGCATTTCTGGAAATCAGCAAGGAATATAAATTATTCACTGAGGAAGAGAGGAAAAAGGTTGTGGCAGCTGGTGGATTACATGTGGTGGGTTCGGAGCGTCACGAATCACGAAGAATCGATAATCAGCTACGTGGGCGAAGTGGCAGACAAGGGGATCCAGGAAGCTCACGCTTCTTTTTAAGTCTTGAAGATAATATTTTTCGGATATTTGGTGGAGACCGAATTCAGGGCTTAATGCGAGCTTTCAGAGTGGAAGACTTACCTATTGAGTCTAAGATGTTGACCAAAGCATTGGATGAAGCCCAAAGGAAAGTGGAGAACTATTTCTTTGACATTCGGAAGCAATTGTTTGAATATGATGAAGTACTTAACAGCCAAAGAGATCGTGTTTATACAGAGAGAAGACGAGCCCTTCAATCTGACAATCTTCAGTCTCTTCTTGTTGAATATGCTGAATTGACAATGGATGACATTTTAGAGGCAAACATTGGTTCTGATGCTCCAAAAGACAGCTGGGATCTTGAAAAACTAATTGCCAAAATTCAGCAATATTGCTACTTGCTGAGTGATCTGACCCCTGATTTACTAAGGAACAAGTGTTCTGATTATGAGGAATTAGGGAGGTATCTTCGTCTTCGTGGTAAAGAAGCCTATCTGCAAAAAAGGGATATTGTGGAGCAACAAGCACCAGGTTTGATGAAAGAAGCAGAGCGGTTCCTGGTCTTGAGCAATATCGATCGCCTATGGAAAGAACATCTACAAGCTCTAAAATTTGTTCAGCAAGCGGTGGGGTTAAGGGGATATGCACAGAGGGATCCACTTATTGAATATAAGCTCGAGGGCTACAACCTTTTCTTGGAGATGATGGCACAAATAAGAAGAAATGTTATATATTCTATATATCAGTTTAAACCAGTGCTGGTAAAGCAAGATCAGGGTAAAACGGAGAATCAGAAATCAGGAAAACGTAAGTCAGGCAATCAGGTCGATACCAACCCAGATCCAGTTGGCACCGTTGAGCCTTCAGCAAGTGTTAGTTCTTAG

Protein:

>Am02G028140.1
MAASSLCSSFTSTTWNPQELHHHRKTLTLAGSSFLRGEFQLHSAPVSKTHRSRRRRSSAVASIGGLLGGIFKGNDTGEATRKQYAATVNLINKLEPEISALSDSELRDKTFALRERAQRGETLDSLLPEAFAVVREGSKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTSELRKENYLCDITYVTNSELGFDYLRDNLATEINCYAFFNITLNSELWHVQSVEELVIRGFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIAEAFERDIHYTVDEKQKSVLISEQGYEDAEEILAVKDLYDPREQWASYVLNAIKAKELFLRDVNYIIRGKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYKLKVTIVPTNKPMIRKDDSDVVFRATSGKWRAVVVEISRIHKTGRPVLVGTTSVEQSDSLSEQLKEAGILHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRVVKPAEGVFVSIKKPPPNKTWKVNDKLFPCQLSNKNTELAEKAVQLAVETWGKRSLTELEAEERLSYSCEKGPAQDEVIAELRNAFLEISKEYKLFTEEERKKVVAAGGLHVVGSERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEYDEVLNSQRDRVYTERRRALQSDNLQSLLVEYAELTMDDILEANIGSDAPKDSWDLEKLIAKIQQYCYLLSDLTPDLLRNKCSDYEELGRYLRLRGKEAYLQKRDIVEQQAPGLMKEAERFLVLSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFKPVLVKQDQGKTENQKSGKRKSGNQVDTNPDPVGTVEPSASVSS*

Promoter(3k):

>AM02G028140.1
AGTGGTGATATTTTCTATTGGGCATGCTTTTGTACTTCATGCTATAATTTGGTGTTAACTTTACCAATAATTTAGTCTTCATGTTCATGAAATTCAAACTAACTTCCTATTAACAGTTTACTTTATAACCATATCTTCAAGAATATTGTTCACTTGAAAAGAAATGCATTATTTGAACACTTTATTTTAGAATTATGGTTATTACATCTTAAGGAGTATGAAAGAGAATCAGTCCTTTCATAAACAAAAAAAAAATTGAGGGTCATGGTTGGTTGGCTTGAATATTTCTCCTGCATGCCTGTAGGTAGAGACCTCAATGTGTATCTAGTCATTATGCTTATCCCACTTACATGTCAAAAGATTCTTTGTTAATATTATTTTCATTTAGTTCATAGATTCTTGGTTGAGGTTTTTAAGCTCTGGTTCTCCTTTGACAATATTTTTCTTTCTGTTTAACTAGTCTGAATACTTCAACAACTGTTTGGATGATCTCCTTTGGACTTAGTGGAGCTGTAAGGTGAGCAACTATTCTAAGGAGCTAAGGCGGTGGCAATGGGATGCAAAGAGATGGATCCGAAGGAGCTGAGGCGGAGGATGGTGGCGAGGTTCTTGGAAGATTTCGGATCTGAGTTTTGAGGACGGTGGCGAGGTTCTTGGATCTGAGTTTTGAGGATGGTGGGGCTGCCAAGCGTTTAAAAGACATGGAACAAGTTGAATTGATTGTGAGAATGTAGGCTTATTATCATTAGCAAGTTTTATTTATCAGTAGGCTTTGTATATGTTGGTAGTTGTACTAATTTTTGTTAAAGAATTTGTATATTATCATTAACAAGGATTATACAAAGGATATGGAGTTTTGTTCATGTATATGTTGGTAGTTGTACTAATTTTTATTAAAGAATTTGAATTCTGTTGTTTTTGATTTATGGTAGCATGGGGATATATTAAGGCTACCAAATAATTTTATTTTTTTAAAAAATGAATTTTTAAAGTGAGCCGGAACTAAAGCCTGACTTCAAAACAGACTTACGAAGTCAGGCGAAACAAATGCTTGACTTTAAATACTTACGAAGTCAGGCAAAACAAATGCATGACTTTAAAACATACTTACGAAGTCAGGCGAAACAAATGCTTGACTTTAAAACAAACTCACGAAGTCAGGCGAAATAAATGCTTGACTTTAAAACTCCTGACATACAAAGTCGACTTAATAAAAGTCAAGCGGGCGCCTGACTTTAAATTCCCTTTTCGCCTGACTTTAAATCCCTTTTTTGCACTAGTGAAACCGATAAATAATAAAGTATTTGCCTATTTGGTTGGGTTAAATCGGTATGGCAGGTTATCACATTAATTGTCATTTCCACCATTCAAGTGACACATAACCAATGGTCGTCGTGGAGTGGATTTTTGGCACCCCCAATGGCCTGGGCAACGCCCGTTGAAACATGTGTTCGGCAACATTTTTAATAATTGTTATAATAAAAATGTGAGGCTGGCTGAGCTTGGTGTTTGGTGCGAGGATACTTGGTATTGGAATACTTCTTTTTTTGCAGGTGCTGCCTTTGAGCTTAACGATGATGTTACTGAGCTGCTGCTAATCCTGCATGACATTCAGGTGGTCCGTGGAGTTGATGACCGTTGGTGCTGGTCTTTGGAACAATCTAAACAGTTTACGGTCCGTTCTTGCTATAAGTTCATCTCGCAGTCTGCTCATATCCCAACCATGGAAAGCAACAGGTCGTTCTTGATGCTGCAGAAATATGATCTGATATCAATGTGGAGGCCTCGCATTCTGGCGAAGATTTTGATGTTCGGTTGGAGAATTTTTAACAATTCATTACCAGTTCATTCTTTGTTATTGCGTGTCGTCATGTTATTTCTTCGGAGGAGGAGACGATTTGTGCCTTTTGTAGGCATGACTTGGAGGATTCAGAGCACTTTGTTTTTGGGATGTGATTTCTCCTTGAAGGTGTGGAGTGAGATTGATCGTTGACTGGATGTCCAAGTGCCTTACCCTTCTAGCTTAACTGATCATTTTCTTGGTTATGGAGAGCTTTGCATTGGCAAGAAAACAAAGAGGGTAAAATATCTTATTTGGTTGACAACTTATTGGTGTATTTGGCTATCTCGCAACAATGTTCATTTTAGAGGGGATGAGCCAAAGGTTGATTCGATTGTGGCCCAAGTGAAGTTCTTATCTTAGTGCTGGTTCATTTATGCGGTGGGTAGTAAGTCTTCTTTTATTCCGTCTTTATGGTGGAATAACACACTCTCATGTATAAACAACTTGTGAATCCATGTTTGTTTTTGTGGTTTTGAGCACTCCTAGTGCTAATTTGAATGAAACATTGCTTATCGAAAAAAAAAGTGGCACATAACCGTATCTATACAAAGTTTGTAAAAAAATAACCATATCAATACAGGAAATAAAAAAATTCCAAATTTTTTAAACTTTTTTTTGACACATATATTTTTAAACTTTTAATACTGTTGTTCAAAGAAAAAATTAAATGACGAATATAAAATTTTAAATTAAGATAAATTTAGTCGGGTAATAATTTTGAATACATTAAAAATAAAAAAAATTTGGATAAGAAAAAAACTTTCAATCAAAAACAAAAAGAAAAAACTATTTAATACTTTTTAATTGTTTGTAAAAAAATTGAATTAATTTTTTTAATATATCGAGTCAGCTTATTTTTGTCCAGCTAAGCATGGGGTATGTCTTTCTTGGCCCACCAGTTACGGACTCGCGGTCTTCTTATCTTATCTTTCGTTCTTGCCTTGCCGCTAATATCCATCACAGACACAACACAGTTCAGAACTCACTCCGTTGCATGTGTTACTGCCACTAGTCACTACTTAACCGCTGGCAACTGATCAAGGGCATGAAATTGAAAACCAAACGCGCCTTTCCAATCCAATCCAAAATTCTCACTATTAGCATAGTTCATTTCTTCAAGTTACTCTCACAATTCTAAATAATCGAACTATCGAAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF07517.17	SecA_DEAD	78	466	2.00E-121
PF07516.16	SecA_SW	772	986	3.10E-54
PF01043.23	SecA_PP_bind	316	422	4.00E-36

Gene family

Gene family	Subfamily
Transporter family	IISP

Gene Ontology

GO term	Description	Category
GO:0010090	trichome morphogenesis	Biological Process
GO:0010109	regulation of photosynthesis	Biological Process
GO:0009658	chloroplast organization	Biological Process
GO:0004827	proline-tRNA ligase activity	Molecular Function
GO:0006433	prolyl-tRNA aminoacylation	Biological Process

InterPro

InterPro term	Description
IPR036266	SecA, Wing/Scaffold superfamily
IPR036670	SecA, preprotein cross-linking domain superfamily
IPR011130	SecA, preprotein cross-linking domain
IPR044722	SecA, C-terminal helicase domain
IPR011116	SecA Wing/Scaffold
IPR014018	SecA motor DEAD
IPR011115	SecA DEAD-like, N-terminal
IPR020937	SecA conserved site
IPR000185	Protein translocase subunit SecA
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0A396JXS3	_

SwissProt

SwissProt term	Description
SECA_PEA	Protein translocase subunit SecA, chloroplastic

KEGG

KO	Description	Enzyme
K03070	preprotein translocase subunit SecA	[EC: 7.4.2.8]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G01800	Albino or Glassy Yellow 1
Medicago sativa L.	MsG0880044595.01.T01	_
Oryza sativa L.	LOC_Os01g21820.1	preprotein translocase subunit secA, chloroplast precursor, putative, expressed
Cucumis sativus L.	Csa016225	_
Glycyrrhiza uralensis Fisch.	Glyur000315s00012762.1	_
Codonopsis lanceolata	Cl_chr06_37300T	_
Arachis hypogaea L.	AH09G11610.1	Protein translocase subunit SecA, chloroplastic like

Expression pattern