Gene detail

Detail information of Am02G027430.1 Annotation

Gene ID	Annotation
Am02G027430.1	KNOTTED1-like homeobox gene 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G027430.1	mRNA	Chr02	165953248	165960954	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM02G027430.1
CAGGTTTGACGTACTAAATGGTAACACAGCAACTAATCCTGCTGAGGGAAATTTAAGTAAGAAAGAAGACAGTGAAGGGGTTGATGTTGACCCTACTCATTACAGGCAAATAATTGGTTCTTTAAGATACCTATGTCACAGTAGGCCTGACATACTGTTTGCTACAGGGATGGCAAGCAGATTTATGAACTGTCCTAAGCAGATTCACTTGAATGCTGCTAAAAGGATACTTAGGTATATTAAAGGAACTTTAAATTTTGGTGTGTTTTTTCCTAACAACTTTTGTGCAGGTAAGAATATCCTACAGGGCTTTTGTGATTCAGACTGGTGTGGGGATAAAGTTGATAGGAGGAGCACTTCTGGCTACATTTTTTGTTTCAAGGAGCATCTATATCCTGGAGCTCCAAGAAACGGGCCATAGTGGCCTTATCATCATGTGAGGAAGAATACGTTTCTGCCTATAATGCTGCAACACAGGCATCATGGCTTGAGACACTAATAAAAGAGCTAAGGATTGACCTAACCGAGGTTCCTAAACTCTATATGGACAACAAGTCAGCTATCAACCTAGCTAAGAATCTTATATCTCATGGGAGGACAAAGCACATTGAAACTAGATTTCACTATCTAAGGGACCAGGTGTCTGAGGGAAATCTAGTGGTGGACTATTGCTCTACAAAGGACCAAATGGCAGATATCTTCACTAAGGCTTTGAAAAGGGAAGTTTTCACTAACCTAAGAAGGAAATTAGGTGTTACTGCTTTCTAAAACCTAGAGGCAGTAACTTTAAAGGCTATATTATCTGAGGGCTTGTCTCAGATCATCAACTTTTTATAACTATAACAAGGGTTTGTCCTGTCCTTAGAGGTTGCCTACTTAGGTTTAGATTTGTGATTAAGGGAGGATGTTGGTTTTTAATCAAAAACCCAAACCATACCCTTTTAATTACAACAGCTATAACTTAAACTGATTAAACTAGCTGTTAAGAGGATAAATGTCCATAGTCCTTTCTGTTACAAACAGTTAATTCTGTTTTGGCTATGTGAGTTTGTTAGAAACAAACTGGTTGTTCTAACAAACTACTATACCAGATTATAACCGTTACATAGTGTGTATATAAATAGACTAAGACTTTGTAAAAAAAAACAATAAATACAATTTACAATGTATTTTTCTTTACCCTAGAGTGTGCTATTCTTCTGTGTGAGTATCTTTCTGCTTTACAATCTTCTGAGTCCTTGAATTCTTTGTGTTCAACAAGTGGTAGTGTATCAGGGAAAGAGAAGAAGTGGTTCAACAAGTGGTTGAGTGAGAAACTCGCAGGGAAAGAGAAGAAGAGAAAGAGTCAGTAGTGTATCAGTGACTGAAACACAAATTTAAACAAAAAGACATAGGTAAGGTTAAAGAAATCTACCTTGTGGTCTCAAGGTGCAGATCCACAGTTTGGTGTTGTTTGTGTTTTCCATAGAAGACATCTCAGGTACGTATAAACAAGAACAAAAACCAGATTAGGGTTTTGTAAGGAAACCAATATCAAAATCAACAAACAAGGAAAATAACAGCGTGGTTACCTTGGTATTGGTGTCCGCAACAAAACCCTTGCAACAGAACTCCTGAAATTAAAGATCTCAGAAATTAGGGCTTCTGAGATTGAAAAATCAAAGGCGTATAACAGAGGGGTTTTGAAGGTTTCGTATATCTGAAGCTTTGTTTTGCAAGATTGAAGTATTTTCAACCTTCAATCTTCGAAACTCTGGGTTTATTGGCAAACCCTAGCAGAGCTGAGAAAGGGAGAAGAAAAAGAACGAGCGGAGAAGAAGAAGGAAAGAGAGAAAAAAGGGGAAAAAAGGAGCTGAACCGGTTCAAGTTTGGTTTTATAATACTTGAAGTTGGATCAACTCGTATCCACGTTCCAACCCGCGTGTTTGAACAGTAACTGATCCACTGGGTTCCGCATTAACCCGTTGTTGAAGTGAGTTGGTGTCAATTGAATTAGGCTTGTGAAGTTGGGCTTCATATCTGATAGTTGCACACCCAAAATTGCTTTCCTGCACCCCTGCATGAAACAAATATTAATTGGTCAAAATTGCAATATATGGTCATCAAATTACAACATAGTAGAGGTTGCCTTCAAATAAGGAAGTAACACGGGCGATGAATAAGCCCATCGAGAACAAGTACAAATAGATAGTTGAGGAACACAAAAGAGGAAAGCCAAGGATGAATAGGGAGAAGAGCACTCAAGAAGAAGATGTGATGTGGCACATAAACATTATAAGAACTAATAGACAATACCGTGAACAGGCATCAAGATAGAGAATTATGAAAGGATTGAAGTATATACGTGGACCCCTTATAGAATTGTGACCAATAAAGTTGGGCGACGTGGTTAAGTGTCACGTCGTGCTGAAAATCAATGGCTGACACCTACGAGTACGGCCTACATAGCTAAAGACACAACAACACCTTAACCTTGTCAAATCCACCCCACTGTTCCGTCTCGCTTTGCACTTCGCACCCTCCTCACACACGCACACATATCCACACACAGTACACACACGCCCACAAACCCTCTCCCTCCTTCTCTCTCTTGTTCCTTTTCCCCAGGTGAGGTTATTTTTCTTGGAAAAGAAAGAAAAGAAACAAGCTCTGGTCTTTTCCAGGTGCGTGTAGCAACCCAACTCTTCTACCCTACCTTCTCTCTCACCCATCTCATCATCATCTCCCCTCACTTCTTCACTTTCTATCACTACAACGTTGCGTGCATCAAATACTTGAATTTTTCATAGTTCAAGCAACTTTCGTTGGGTAGATAAAGACTCCAAAAAAAATCTACACGTACGGTTCTTACTTTTGTGGCCTTTCATTTCACTATATCTTTCTTCTTTCTTTATGGGAAAGAAAAAGCTTTAGACCTGCTTTTTTGACTGCCCGGTATCATAGTTGACTAACTTAGAAGAATTTTCAGCTCAGTGCTAGCTAGCTAGTTTGAGTTCAGAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03791.16	KNOX2	111	157	7.30E-24
PF03790.16	KNOX1	59	99	5.60E-21
PF05920.14	Homeobox_KN	240	279	4.70E-17
PF03789.16	ELK	200	221	1.70E-10
PF00046.32	Homeodomain	247	280	9.80E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	ELK
Transcription Factors Family	HB-KNOX

Gene Ontology

GO term	Description	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR005541	KNOX2
IPR005540	KNOX1
IPR009057	Homeobox-like domain superfamily
IPR017970	Homeobox, conserved site
IPR008422	Homeobox KN domain
IPR001356	Homeobox domain
IPR005539	ELK domain

trEMBL

trEMBL term	Description
A0A8B8ME25	_

SwissProt

SwissProt term	Description
KNOS1_ORYSJ	Homeobox protein knotted-1-like 1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G23380	KNOTTED1-like homeobox gene 6
Medicago sativa L.	MsG0580025740.01.T01	_
Oryza sativa L.	LOC_Os01g19694.1	Homeobox domain containing protein, expressed
Cucumis sativus L.	Csa013896	_
Glycyrrhiza uralensis Fisch.	Glyur000034s00002965.1	_
Codonopsis lanceolata	Cl_chr01_47790T	_
Arachis hypogaea L.	AH09G12910.1	Homeobox protein knotted-1-like 1 like

Expression pattern