Gene detail

Detail information of Am02G026900.1 Annotation

Gene ID	Annotation
Am02G026900.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G026900.1	mRNA	Chr02	164786257	164792785	-

Sequences

CDS:

>Am02G026900.1
ATGGCGGGAACAAACGAAAACACATCGAAAGAAACCGTACACGAATACGAAGAAAAAGCAGGCGAGGACCGAAGCTTCGAAGAGCTTGGATTAGACGCTCGACTCGTTCGTGCCTTACTGAAGAAGGGAATCGAGAAACCTACTCTAATTCAGCACGTCGCAATTCCACTGATTCTGGAAGGTAAAGACGTTGTTGCTCGAGCAAAGACCGGTTCTGGAAAAACGCTTGCGTACCTTCTCCCCTTGCTTCAGAAACTTTTTACTGCTAACGTTGATAGGAAGAAGCTAGCTCCCAATGCTTTCATTCTTGTCCCCACTCGAGAATTGTGTCAACAGATATATGCAGAGGTTAAGTCACTCCTCGAGTTATGCAGAGTTCAGCTGAAAGTTGTACAGTTGAATAGCAATATGCTTGCTACTGATTTGCGAGCAGCACTGGTTGGCCCCCCTGATGTTTTAATCTCCACTCCTGCTTGTATAGCCAAATGCTTGTCCGGTGAAATACTCCAGGCGACATCCATTAATGGTTCCCTTGAAACCCTAGTTCTCGATGAGGCAGATCTTCTATTATCTTATGGGTATGAAGCGGACATAAAAGCTTTAACACCTCACATACCCAGAAGTTGCCAGTGTCTACTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTTTACACAACCCCTTTATTTTGACTTTGCCTGAAGTAGGAAATCATAAGAATGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCATGTCCTGACAGTGATAAGTTGCTGTACATCCTTGCTATGCTGAAGTTGGAGCTGGTCCAAAAGAAAGTTCTTATATTCACGAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGGTCTGCTGTTTTAAATGCTGAATTGCCGCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTATTCGATTATCTAATTGCATCAGATATCAGCCAGTCAAAGGAGAAGGATGAAGCATCTAAAGAAAATAGTGTTGGATCACGGAAGTCTAAAAAAAATGCAAAGCTAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTGTAAACTTTGAAATGCCTCGCAGTGTTGCAGGATACGTACATAGAATTGGACGTACTGGAAGAGCATACAGTTCTGGTGCTTCTATCTCCTTGGTTTCTACAGATGAGATGGATACTTTTGAAGAAATAAGATCTTTCGTTGGGGATGATGAAAACAAAGGCTCAAACTCAATTGTCGAGTTTCCCTTACTTACCAAGAACGCTGTTGAATCCTTACGGTATAGGGCCGAGGATGTCGCAAAGAGTGTAACTAGAATTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAGTCCCACTTTGAAACTAATCCAAGAGACCTAGATCTCTTGAAACACGATAAAGTTTTGAGCAAGAATGCCCCTCCTCCACACCTTCGTGATGTCCCGGACTACCTAATAGACAAAACAACAAAAGAGGCAAGGGCAATGGTCAAGCTTACAAGAGATGCAATGGGAAATAATAATCGCCAACGGGGATCCAAGAGAAAATCAAGAAAAGGCGGAGACCCTCTGATGGCAATCTCTGCTGCGGGATCAAAAAGACCGCACAAAGTTTTTAAAAAGGCTGGCGCAGGCAATAACAGCAGCAGTGATAGACAAAAACATAAAAAGACAAAGGCTATTTGA

Protein:

Promoter(3k):

>AM02G026900.1
AACTAGCTTGACTTGTAGTTAAACTAGTTTGTGTGTCTTGTTGCTTGTGTGGCAGTAGCTACCCTTTCTTATAAGCTAGGCATGTAGACTTTGTAGGAAGCCCATGCATGGACTTGGGCTTGTTCCTTATCTCTTGTTTCATGAACATGAAACTACATCATGTGCTTTGATACCGCGTGATGTAGTTTCATGTTCATGAAACAAGAGATAAGGATCAAATTATTGATCTACAAACTAAAACGCGCATAAATTGGAAGGGAATAACGTAAACTCACTTGAAGAAAAGACCAAAATGGAGAGATGAGAGATGGAAGTAGAAGAAAGTTCACCACTTTTTTCGTGGGAATAATATAAGATTGCACGCCACTTGAGGCCACCCAAGCCTCAAGATGAGTGGTTGAAGTTCTAATATAAGAACTTGAGAGATAATTCATTTGCCCCCCTCCCCCACACACACACAAACACGGGCACGCGCGTTGTGTCAATTTTCCATTATCACCTAAATTTTTTTCTTACACCATTTATGATGTAGTCTTTATATGGACTTTTTAGTGGATAAATTCCATGAACCTTACTGGACAAGCCGCAGTGAGTCCATGGCCTTCCTACAAAGCCTACACGCCTAGCTTATAAAAATGGTTAGCTACGTCCAACGAGCAATAAGATGCACAAGCTAGTCTAACTATAAGTCAAGCTAGTTTTATTACATTTTAATGGAAAATAAAAACTAACAATTGAGATTTTCCTATAATCAATGACTTGAAATTGTCCTTGTTTTTGTTCTTATTCCATTCCTGGTACTCATCAAATTTCATTCATAATGGCAGTTGAAAATATTCCATAAGTCATATTTTGATATGGCCCCTAATGTAAAGATGCTTATGCTTTTTATAATCCTAATAAATGAACATCTTCAAAATTTAAGTTGCTTTGGAGCAGATTCATCCCTCATTTCATGTTTTTCTAGTTTAGTGTCTTATAAAGTCCCCATAGATGATAATCTCATGCTTAGGTGAGGCACTCATGTTTCTAGACATGATATCTGTAATATGGAAATGGATGGCTCTATTCACCATTTACATGATTGTCATTTTGTTGTCAGTCTTTGAAGTTTGCTTTTTGATGTCCTATAGTCTCGAATTGTTTCCTCCAATCCTCTAGCTATATCAGACATTTATGATAAAAAGTGGAGTTTCGAGGTTAAAGATGTTGTTCAGACTTGTGTTGTTAATGCGCCTGTAGCACCATTTAGCATTATAGAAATAACATATATTTCTTAGATAAAAATATATTCTTATGGGCCAAAAATAGGATTACTGCTAGTGTTAGCCTTTCGGGAATGCTTGGCTCTTGTTTAGGCATGGCAACGGGGCGGGTCGGGGACGGGTTTGCCAGTCCCCGCCCCTACCTCTATCGGGGTCGGGTTTTGCATCCCCCAACCCCGTCCCAAACGGGGACGGGTTCCCTGCGGGTATCCGTTTCCGCCACAATTTATAGGAAAAATACAAAAAATATATTTATAATAATTAATAAAATAAAATAATAATAATTATACAATGATAAAATAAAGTTAAAAGTATTAAAATAGATTTTTCTATAGGAAATAAATCAAAATTAAAAATAAACAAAATTTATGAAACAAAATGAATGAATAAATATGCATATAATAAAATAAAATAATTAATTTATGTTTTGTCGAGCGGGTTCGGGGCGGGGATGGGGTGGGTATCGACATCCCCGAACCCAACCCCGTCCCCAGTCAAAGCGGGTTTTCCCGGTCAAACTGGGGGGCGGGGTCGGGTGGGTACCCGAGGGTTGGGGTTATGTTGCCATGCCTACTCTTGTTGCATGCCTTCTTTGATACAATAATCCGTAATTCGCAAAGATATTTCCATCACTGGTAAGCCTAATAAATCTCCAAAGATTAAAAAGACATAAACCCCCCTTTGTTATTAGGTTAAATGTAACACTGACAATGCGGCTAAAGGTTATCCTTGGCCGTTTGGTTGTGGCGAAATTTTCAAATGATAGAATTTTTTGATTGTTTCTCAATAAATACAAGTAATATTTTTGCTCTTTAAACAAAGATTCCAAGTGAAATCATTGTCATTGAGATAAAATTCGACAAAGATTGGAATAAACTTTGACTTGAGTGTGATTCCTAATTGATGGTGTTTTTTTTTGACAAAAAAATGTCTTAACTTAAACTAATTGATGGTGTTGGCTGCCAAAGATTCGTCTATTGTTCATTGAAAGATTAGAAATAGACGATGAAATTGTTTACTTAAAGCTTCAAATATGAACTTTTGGGTGACTCGTATTTTAGAAAAGACAGATCTTGCGTAAATAACCTTGCTAATTATGGAACTCCTATCACCTGCTTGGTTTGGTGGGAAAAGATTTCTATTTTTTTCTCAACTAAATATTTATAACTTTATTAGAGACGAATTTTTCCCAACAGATGAGATATCCCCCATTATATATTTAATTAATTGTTTTCTTGACAAACTTTGCATCGTAGTTCTGCTATAAATTCTTAGCCTAGTTCTCCTTCGTTTTTTGTTGTATATTACTTTATCTATGTTTTTATTAAAACAAGTGAGAATACTATTTTTATTTACGAGTGAATTTTCACTAAAGAAGATTTACGTTTTAATGTTTTATTGAGGCTCCTACATTTTTTGGGAACACTTATTGTCGACAATATTTGGCGCTGTGACGAATAAACACATTGAAAAGGGGTGTATTAGGAGAGATAGGGGGTGTCAATAGTTACTCCCTTTTATGAGAAACCCGGGCTAAAACCAAGGAATATGATTTATGGCCCGGCCCAACAGAATGAAGACCTAAACAAACAAACACACAGCAAGGTGCACGTTCCCAAGTCTCTCTATTTGAACTCTAACCGTGCTAAACGACGGCGCATTGGGATTTGCCGGTCGCCACCGCCACAGCATCAAGTTCAGAACGGTTCTATCCTTCTGAAAGCGGCGAGCAGTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	49	225	5.10E-37
PF00271.34	Helicase_C	264	407	1.20E-36

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005730	nucleolus	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0009507	chloroplast	Cellular Component
GO:0016787	hydrolase activity	Molecular Function
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
A0A1S2XWR0	_

SwissProt

SwissProt term	Description
RH16_ARATH	DEAD-box ATP-dependent RNA helicase 16

KEGG

KO	Description	Enzyme
K14810	ATP-dependent RNA helicase DDX56/DBP9	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G34910	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Medicago sativa L.	MsG0180004589.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa012148	_
Glycyrrhiza uralensis Fisch.	Glyur000001s00000081.1	_
Codonopsis lanceolata	Cl_chr03_23700T	_
Arachis hypogaea L.	AH16G00160.1	DEAD-box ATP-dependent RNA helicase 16 like

Expression pattern