Gene detail

Detail information of Am02G025730.1 Annotation

Gene ID	Annotation
Am02G025730.1	Homeodomain-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G025730.1	mRNA	Chr02	161445497	161449264	-

Sequences

CDS:

>Am02G025730.1
ATGTCTTCATCTTATCCTGTTCTTCCCTCTTCTTCAGTGCAGACTGCATCAATAAATTCTAATATCAGAAGTGTTGGACACATGTTTTCAAACCCTGTCGAATTCCCTGATAACCTCGCTTTTTCCCCTGCTTCAGAATTGCATTCTACAACATTCATTTCTAACCCTCAAGAAAGTGATGCTGCTATTTCATGGGGATCGGATCCGTTTCAGGATATTTTTCAAGTTTCTGATATTGTTCCTGTCCAGATTCAGAATGATAATGTTGAACATAGTGCTTCTTATGTCTCGGCTGGAAACGCCAAACCAGCTGATTTCAAGGAGTGGGTTGATCAGTTAATGTCAGACTCGGTTGACGATTCTCTTAATCTAAATTGGAATGATCTTCTTGTTGTTAGTGATGTAGCAGAACAAAGATCAAAGGAGACACAGGTTTCACAGCAGGAGCATGTACCACCTAAAGAAGTTACTGATCTTCCTAACTCTGCGCCGACTACATCACAACATAAACCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAACCTAATGAAAGTTGAGGGCCTTACCATCTATCACGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCAGAGTCATCAGAAGGAATTTCTGAGAAACAGTCGACTTCAATCGAAGAAGTGAAGTCTCTAGACTTAAAAACTACTAAGGGGATTAATGAAGCATTGCAGTTGCAGATGGAACTTCAAAAGCGGCTTCATGAACAACTTGAGATTCAAAGGAAGTTACAGATTCAAATTGAAAACCAAGGGAAGCGTCTACAGATGATGTTTGAGCAACAGATCAAGTCGGATGAGCCTTCTGCTTCGCTTTCAAACGCAGTGCTCCCTCCTCCAAATAACAATTTAGAAGCCTCAAATGAGGGTCATGAAAAAATTGGAATCAACAATAGCACACCAGAAAACATGCCTGAAGAAAGTTCCCTGGATGCAAGCACAAAGCAAAAGGGAGATGATGCTAAAGTTACTGGCGAACATGATTTCGGGGATGACCAACATGCTGCGCCACCTGCGAAACGGGCGAAGACTGAAGAGCTGATGAAAGCAAAGTAA

Protein:

Promoter(3k):

>AM02G025730.1
GCGACCAATAACTATTCAGTCCGACTTCACCATCACCTTCGTTCAAGTAGCAAGCAACCTCAACGAGCCAGTAACGTGACCAGGCAAACCAAATCAGGTTGATCGCCCACATTGGGGCCCGGATCATTACTCATTTTAATAATTACAAGATGGTTGATACACTACAAGAAAATCGTGCATTACCGGCGGATTTTTTCCGGCGGAAATTTGGCATTTCCGGCGGAAAAAATAGGTTTTCCGGCAGATTTCTTTTAAAAATAGGTTTTCCGGCGGAAAATGTGCATTACCGGCGGATTTTTCCGCCGGTAATTTCCGACGGAAAAATCCGTCGGTAATACGCATTACCAGCGGATTTTTTAAATTATTTTAATTTTTTTTTAAAAAAAAAATCGCCGGAAATGTGCATTACCGGCGGATTTTTCCGTCGGAAATTGCCGAAGGAAAATTCCGCCGGTAATGCACATTTCCGGCGGATTTTTCAAAAATTATTTATTTATTTTTTTCCACTCTCCTCATTTCCTATAAATAAAACTTTCTCCTACACTCTTCTCATTCTCTCATTTCACTTTATTTCCTTCTCATACTCTCCAATCTCCATAAATTTCTCTACATATCTCTCTTCTATATTTCCTCTTTCTTCTTCCTTCTCATTCAATCTCTTCTCAAATCTTCTCACATACATACACTGCATTTTTCTCAATCTCTTCTCAAAATCTTCACACATTCATACACTTCATTTTTCTCAATCTCTTCTATTCTCTTCTCACATTTCTGTTTTCTCATTACTCTTCTCTTCTCAAATATTCAGTCTACGAATTTAAATAATTAAAATAATATTAATTTTTTAAATAAACGAATTTAAATAAACGAATTTTAAAAAAAGAAATAAATTAAATAATAAATAAATTAAAATAAACGAATTTAAAAAAAGAAATAAATTAAAAACAAATTAAAAAAATTAAATAATATTTTTAAAATAAATATATTACCGGCGGATTTTATTAATTTACCGGCGGATTTTATTAAATTACCGGCGGAATTTTTAAAATAAATATTTTAAAAAAATTAATTACCGGCGAATTTTGGTTGGTTACCGGTAGATTTTCCGCCGGTAATTTTCGGCGGATTTTCCGACGGAAAATCCGCAGGTAACCGTTACCTGCGGGCGAATTACCAGCGAAAAATATTCGCCGATAATGTCCAATTTCTCGCAGATTTTGGCCATTACCGGCGGATTTTGTCCGCCGAAAATCCCCGTTTTTCTTGTAGTGATAGTAGGCCAATTATGGAACAAATGCATGAAATAGAAAGGATTCTTAATAATTATAAACAACATAAAATGCATATGGATGAAACCATCATTGTCTCATCAATCATTGATAAACTCCCCCCTTCATGGAAAGACTTCAAAAGAAGTTTGAAACATAAAAATGAGGACATTTCTCTTGATCAATTGGGAGACTTTATTCCATAAACTATTATTGAAAGATGTGCTTGGTGTGGCTGTGCATGACACATCAAAGTTTCTATAGTATTCTGAAGGGGATTCGCAGGACACCCTATTGTATCCAATTGGTTAGAATTGGTGGGGGGCGAATTGAACCTAAAGGTTAGTGTGTTCACACATGCTTTAGAATCAAGTGCGGTCTTATCATCTTCATCATTGTTCAAGTGTTGCAGTATCTTCCCCAAAATATTGTTCTCACATGAGCCAACTTCTTACCCACGCCCTTATGGGGAATGAACCAACTTCTTACCAATTGAGCCAACATTCTTTGGCAGTTCAAATACATCTATTATACGATGAATCCAAAAAAGTTTTATTTGGCAGTCCAAATACATCTATTATACGATGAATCGAAAAAAGTTTTATTTTTTATAAATAGATAACATTTAGTCAAATAGGTTCACAAAAAAGGAAGTGGGAAAAAGGTAAAGGGCTATTGTATAAGTTAACAAACTCTGGAATGACGAAACCACCCCATATTTGAATCCGACGGTAGAGAAAAACATATTCTATTTTGTTGCAAATTGTGAAATAGAATTTTGTGAGGGACCCAATCATAAAGGGGTCAAAAACAAAGTGAGGTACGTCCTCTCGTTCGTTTTATGGGGCGAGAGACGAGACAACGATCCCCTAAACATATTTTTTATTAACTAAAATTACTGCTGCGCCACTCTTCTTCTGCATTCTCCCTTTCAGGTTCGATCACTATTCTTCATATTCTTCTTTCTCAATTCAATTCTAACTTATGGATAACCTGTTTTTGTTTACACACCCGCCGCTTTGATTCTTTTTTTCGTTTTTCAGATGACACTCTTCACTCTACTTATTATTTGTTTTGATTGTTTTGGGATTATTAATTTGAATTTAACACGCTAACAATTTCGTCTCCCCGTTTCTACTGATATTAAATTTCCATGTTTCTTCAAAATATTCTGTAATCGGATTTTTATCTGTTAGTTATTCTCTGCTTTGAATTTAATCGACTCAGTAAATGATTACAGTGATGTGGTGTGTGTAAGCAAATTAGGCGTCTTGTTTGGTGGCTTCTTTTTTTTTTTCTTATTATTAATTATTATCAATAATTGATTTAGTGTTGGCGGTGGCGGCGGCGGCGGCGGCCGATGCTGGGTTATTCCTCATAGGTGGTGCTTTTGCAGTTTTCTATTGCAGTTTTCTATTGAATTTGTTTATTAATTGCTTTTATCTGTTTTCTGGTGCTTTAGCAATATCATTCAAATGCACTTGAAGCTCATAGTCTCTACTAGTGAGATATGAACACCGACACAGACAGTTCAATTACTTGTATTTTTCAACTTAGCGTGTCCGGTGTTAGTGTCTGTATTGGTGCTTCATAGGTTTTATAGTTTGTTTAATTATGTGTTTGGTGAACATAATTTCTCATTAGTGGTTGAGTAATTGATACACTCTACTTTTCATATTGAAATCAGGTCATGTGATTGATTCACTTGGAAGCCTAGCCTTCCTTGGGAGCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF14379.9	Myb_CC_LHEQLE	257	301	2.80E-19
PF00249.34	Myb_DNA-binding	172	223	6.70E-09

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0001067	transcription regulatory region nucleic acid binding	Molecular Function
GO:0010597	green leaf volatile biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR044848	PHR1-like
IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
IPR006447	Myb domain, plants
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A3Q7XQN8	_

SwissProt

SwissProt term	Description
PHL1_ARATH	Protein PHR1-LIKE 1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G29000	Homeodomain-like superfamily protein
Medicago sativa L.	MsG0180004458.01.T01	_
Oryza sativa L.	LOC_Os07g25710.1	myb-like DNA-binding domain containing protein, expressed
Cucumis sativus L.	Csa011000	_
Glycyrrhiza uralensis Fisch.	Glyur000578s00021005.1	_
Codonopsis lanceolata	Cl_chr06_35850T	_
Arachis hypogaea L.	AH19G20800.1	protein PHR1-LIKE 1 like

Expression pattern