Gene detail

Detail information of Am02G025260.1 Annotation

Gene ID	Annotation
Am02G025260.1	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G025260.1	mRNA	Chr02	160179524	160182873	+

Sequences

CDS:

>Am02G025260.1
ATGTCTTGGTGCACCATTGAGTCCGATCCAGGTGTATTTACAGAACTTATTCAGCAAATGCAAGTGAAAGGTGTACAGGTTGAGGAACTATATTCATTGGACCATGACTCACTCAACAGCCTTAGGCCTGTATATGGGTTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGATGATCGTGTTGTAATCAAAGATCCCAACCCTAACTTATTTTTTGCCAGCCAGGTAATTAATAATGCTTGTGCAACACAAGCAATCTTGTCTATTCTTATGAATTCGCCAGATATTGACATCGGCCCCGAGTTGAACAAACTGAAAGAGTTTACCAAGAACTTTCCTCCTGAACTCAAAGGTTTGGCTATCAATAATAGTGAGGCGATACGTACAGCCCATAATAGCTTTGCAAGGCCAGAACCTTTTGTCCCTGATGAGCAAAAGGTTACTGGAAAAGACGATGATGTGTACCATTTTATAAGCTATCTACCTGTTGATGGTGTACTGTATGAGCTTGATGGATTAAAAGAGGGTCCTATAAGCCTTGGTCAGTGTGCTGGTGGGCAAGGTGATATGGAATGGCTTAAGATGGTGCAACCTGTGATCCAGGAACGCATCGAAAGGTATTCCCAAAACGAGATAAGATTTAATCTCCTAGCAATCATCAAGAACAGGAAAGAGATATATACTGCTGAGTTGAAGGAACTTCAGAAGAGAAGGGAGCGTGTTTTGCAGCAGCTAGCCGCATCAAAGGAGAGACCGGTGGACAATGCCAGTTTTGAGGCGCTGAACAATTCTCTCTCAGAAGCAAATGCTGGAATTGAAGCTGCTACTGAGAAGATCTTAATGGAGGAAGAGAAATTCAAAAAATGGAGGACAGAAAACATTCGTAGGAAACACAATTACATACCCTTTTTGTTTAACTTCCTAAAGATTCTTGCTGAAAAGAAGCAGTTGAAGCCCCTCATTGAGAAAGCCAAGCAGAAAACAAGCAGTTCTCAGTGA

Protein:

Promoter(3k):

>AM02G025260.1
ATTTCTTACATTATCTTCCAACACTCTTATCCACTTATTACTTGTTTCTAACTCACTATTTGTGTCTCTCTCTTTCTAACGTACTCCCAGTCTTATCCGCACTCATTCTCCTTGTTCTTTGTTATTCTCACTTTAACCCACTATCTAGGATTTAAGATAGACAATTCTCACCATGATTGTGTTGAGATTTCAAGTGTGAGTGGTTAGCCCACATCGGCTAGGAATCAGCTCAATGAAAGATATATAAGAAAGGGACCCATATACCTAATATCTTAAGGTTTGAGATGGAGATTTGATGTATGTCTCTTGGTAGTCCTAATCGCACTCCCATTAACATCCTTGCTAGACCGTTGAAGCAAAGTTACAAGTTATATAGTATATACCATGATACGAGTATTGTTGTGGAAAAGGTCTCGAGAAGCTTGTGGTTGCTTCCGTTTATATCTCGACAAATACTCTTTTATCTTCTGCTCCAAATCGATCATATCCCTTACGAATCATTTGATATTGATTTGACGACCAAGACATAGACATGCTATAACAACTTTAGATATTTGTATAGCAATTATCAATTCAAATCTCACCGTGCATGTAGTTGTCAAATTGGATCGTCTGACTCGGCCCAACCCAATAAGACAAATTTAAAAAATGAACTAGGTTAGGCCAGTCTAATTATCTATTGGACTGTGTTTTTTTAGACCATCAGAACCCAAAATTTTGGCCCAAATGACCGGTCTCGTCCGGTTCAATTTTTAACCAAGGAAAACATTAGAAATATCTAAACCTAAATCAACATTAAAAAGCATGTTAAGACTACCCTATTATGAGTCAATTGGGTGAGCTAAAACTGTCAAGTTGTTTTTTTTGGGCTTCTCATTAGTGAGTCAAACTCAATCTAAAACCAATGTTTTTAAAACCGGACCGGAGATCAAACCGGCGAGGCCTCCGGTTCATGGTTCAATCGGATCAACCGGTTCAACCATGGTTGAACCGGATGAGTAATTTATTAAATAAAAAATAAAAAATATTAAATTTTGGAGAAAAAAGTAAATTTAAAAATAAAAAAATGTATTTCGGGCTGTTCAATCCGGTTCGGTTTCCGATTCAAAGCGGTTGAACCGCGGTTCAACCCGGTTCTTCCCCGGTTCGATCCGGTTCTGGGCGGTTCAATAGGACTGCAGTTCAAATGGGGTTGAACCAACCGGCGGGGGGTCTGGTTCCCGGTTCAACCGGTTGAACCGGCCGGTCCGGTTTTTGAAACATTGTCTAAAACACTGATCAAGCCGGCTTATTGAACTAGGCCAAAATTGACGCTCTACCGCGCCTCGCACGTGTCAATACTAGCTTAATATGGCTTAAATATGTTTTAGCCCCCTGCAAATATAGTGTGTTTTGGTTTAAGCCCCTCCAATTTTTTTTTTTAAGAAAAAAACCCTTGCAAAATACACTCTTTGGTATAAGCCCTTTTGTTACTGAATTGTTAGTAAAACGTTAAAAAATTGACAACCTGTCTACCACGTGTGTTTTTTTTTGCTGACTGTACAGTAGTTAAAAGATTAAAAATACTGACTGTTTATTCTTCTTCATCTGCGACTGTTTCTTCTTCTTCTTCTTCTTCATAGACTGAATCATCTAAAACAACATCACCACATCGACTGTTTCTTCTTCATCTGCGAACTGAAATTGAAGCAGATCTGAAGCAAAAACAAACAAATCTGGAGCAAAATGAAGCTGATCTGGATTTCAATCGAAAATCGAAAGTCACAATGGAAAACCCAGAAACGATTGAATCGAAAATTGAAAATCGAAAATCTGGGTTTCAATTTCGTTAATGGGTTTTGTTTCAATTCGAAGATCTGGGTTTCAATTTCGTTTATGGGTTCATGAGTTTTGTTTCAATTCGATTTCAATTCGAAAATCTGGATCCAATTTTAGTTTATTTTTTGCTGACCCAGATTTCGTTTAGAGTGAGAGTATTGATCTGGATCCAATTTCGTTTATGGGTTTTGTTTATTTTTTTCTTTTTTCCTCTTTTTTAATCTGGATCCAATTACCTTTACCTTGTTCCTCTTCTTGGTTTTAATTTTTTTGGAGTTAACCAACACCATAAACAAATCCCTCATCCTCGTTTCCTCTTCATCATTCTCGCGAGAAATAGAAGGAAAAAAAAGAACCAGAGAAGAGGGTGATGTGAGAAGGAAGTCGCGTGGTGGTGGTGGTCGATTCGAGAACATGACGAAGAAGGAGATAGAGCCATGGTTGTGGTGGTTCCAGTAGAGAGGAAGAAGAAGCCATGGGTGAAGATGGTGAAGATGAATGAAGAGGCTTTTAACAAAACACTTCATTTTGTAAGGGTTTTTAACAAAGCACTCAGCATTTACGGTCATCATTTTTAAGACACCTTGGCAGACACATAGGTTTTTTTAACACTACACTAACCCTTCACTAACAAAAGGGCTTAAAACAAAACACATCATTTTGCAAGGGCTTTAAACTAATTTTTTTTTCAGGGGCTTAAACTAAAACACCCTATATTTACAGGTGCCTAAAACATATTTAAGCCACTTAATATTATATTTTGACAAAAAAAACCTTATTATCTCCACCTCAACATTGTTTCAAAAAATAAAAACAAAATCACCAAAAACAATCCTTGAATGTGGTAGTGTATAAAAGTATAAACCCTTGACGGTGAAGCTCGGAACAAAGTGAAATTACAGTTCGGCAGCAAGATATCAGAAGGGAGAAAAACAGAGGTACTACTCTTTCTAATTTCCATGTCGTTTTATTACGAAACATATTCATCTGTAGCGTCGTTTATTGCTTTCACGGGTGGAATATCTCTGGTTGCCGAAGAGAAGAATAGGAACAGGGTTTGTTCCTTATCTGACCGGCGACGAAAAAAGATAAATTCTAAAATAGAAAAGAAAGTTTTTCATCACTGAGCCCTAGCTCTTATTCCTCGTTTTGTTTCCAGGTTGCTTAGTAGAAATTGGAATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01088.24	Peptidase_C12	3	206	3.10E-71
PF18031.4	UCH_C	273	318	2.60E-20

Gene family

Gene family	Subfamily
Ubiquitin Family	UCH

Gene Ontology

GO term	Description	Category
GO:0004843	cysteine-type deubiquitinase activity	Molecular Function
GO:0016579	protein deubiquitination	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR017390	Ubiquitinyl hydrolase, UCH37 type
IPR036959	Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily
IPR001578	Peptidase C12, ubiquitin carboxyl-terminal hydrolase
IPR041507	Peptidase C12, C-terminal domain
IPR038765	Papain-like cysteine peptidase superfamily

trEMBL

trEMBL term	Description
I1NIJ5	_

SwissProt

SwissProt term	Description
UCH2_ARATH	Ubiquitin carboxyl-terminal hydrolase 2

KEGG

KO	Description	Enzyme
K05610	ubiquitin carboxyl-terminal hydrolase L5	[EC: 3.4.19.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G65650	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
Medicago sativa L.	MsG0180004394.01.T01	_
Oryza sativa L.	LOC_Os02g57630.1	ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Cucumis sativus L.	Csa009564	_
Glycyrrhiza uralensis Fisch.	Glyur000226s00010830.1	_
Codonopsis lanceolata	Cl_chr06_31830T	_
Arachis hypogaea L.	AH19G22830.1	Ubiquitin carboxyl-terminal hydrolase like

Expression pattern