Gene detail

Detail information of Am02G024720.1 Annotation

Gene ID	Annotation
Am02G024720.1	RING/FYVE/PHD zinc finger superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G024720.1	mRNA	Chr02	158473373	158479224	+

Sequences

CDS:

>Am02G024720.1
ATGGTCGTTAGCGGAGGGAAGCCCCTGAAGCGCATGAAGAGGAGAGTCACCGCCGATTTTCACGACTTCTTCTCGTTTCCCTCATCATCCCTCGCTGCCTCAGAAAACTTCACCGGCGGACCCTTCCGATCCAACGTCCGCTCCTTCCTCACCAAGTACGCGTTGCTTCCACCGCCGTCGGCTCTGTTCCCCCACCTTCTGACGTGGCAGATCCTCTTCCGTGTCGGAGAGATCACCGATGGCTCCGAATCGGGTCCGGCGGTGGTGTGCCTCGACGTCGTGGAGGAGGACGTTGCCAGATCCAGATCTATTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCAACCCGGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCCGATGGGAGCTCCATTGGTGGATACCACAAACCATGTATGTGCTGTGGAGATATCTTGCATTTATCAGAATCCAAGTGTAAGTCGTGCAACCATGTGACAACCAGTGATGATGTTGAAGACTGGGTGTACCACCAATTAGAAAACACCACTCATCTCTTGCATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCCAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTTTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGACGTCTCAAAGAAATATGGGCTAGAGTACCGCTTGCTCCATGCTATTATGAAGGGACATCCATGGTATGGTGACTGGGGCTATAATTTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCTTATGAGTCTGCTGTAGAAAGCCTATCCGATCTTCCCTTGTCCATCTTCCTATCCCAGGAACAAAAGCCCCACTCTCGTGTACAAGACATGATCAAATATTACCAGTCTTTGTCAGAACATGAGCTTGTAAATATGAGGGACCTATTTTGTTTATTGATGGGTTTGATGCATGATGCTCGCAAGACTGCATTAAAGACTGATGACATAACCTGCAAGAAGCGTCGTTTTGGTGCTTCTGGGCTATCAAGTTCTTGGGAAAAGAGTGATGTTGATCGAGTGGAGGAGGCCATGCTCAGAGTGCTGCGAGCAGTGTCTGGGTCTAATTGGGTTAATGGGCGTGCTCTCAGGGGTGCTGTTTGCAAGGGGGCCTCTCCAGAGCTGCTTGATTATTGCCTTGCAGAACTGGGAGGAAAAGTGTTCTATGGTGGAATGGTTGTCAATAGTCGATGCAATCCCCAAACAGGAGTTTATGAGTTCAGACTTGAGGCTGCAACTGGTTCTGGCTTTGGATTTATACCCAACAAAAATTCCTCAGGCACGAACTATCCATCTGAAGAGAATCTCCTACAATGCTTGAAATATTTATACGAGTCTTTCCTTCATCCTCAGATGATGCTAAACTATGTTGAAGAAGAGACAAGAACTCTTGCAATGAGCTCAGCTCAGAAACTACTTGACTGCAAGCAATTAGTAAAAGATTATCGTCCTGAGATATTGCCAATGTCAGATTTGAATAAAATACGTATCTCATGTCAGGTTGAACTAGTGGACGAATTTGAAGATTCAGAATCTATAAATCCACCAGAACTAATTGTGCTCCCCTTGAATGCCTCGGTGTCTGACCTTAAGATTGAAGCGGCTAATGCGTTTCAAGATGTATATCTAATGTTTAGAAAATTTCAAGTCGATGAGCTACTTGGCTATAGTGGTGTAGATGATTCCACCCAGGTCAAGAAGCTCTTGTTAGGATCGAAAGAAGTAGTTTGTGTTCGAGGAAGATGCATTGGGAAGAATGGTTTGAGCAAGTTTAGAATGGAACGTGGACTAGAGAGGTGGACTGTGGAGTGCAGTTGTGGGGCTAAGGATGATGACGGGGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGGAATTCGTGATATTGATCCCGTTCCAGCACGTTTTGTTTGCCTGAGATGCCAAATCTCTGACTCAAAGCCTAAATCTAGCGGGCAGTGTAAAGAGGAGACTGTGATGACTGCTACTACTACTACTAGTTGTTGCCTTGGAAACGGCTTGCCAGTGCCTTCTGATGTTCGTTAA

Protein:

Promoter(3k):

>AM02G024720.1
GAAAACAGATTCACTTCAAACTGTTCTCTCTGGATTTCTTTTAGATTTTACAATTACAATATAATCAAACCCATTCCATCCCATGTTGGAGATATCTGGCTCACTTGTAATAGAACCACTTTTACTTAACATAAACAACTTAAAATCAGGCAAATATGATACTTCAGTGGTCTTTGATATGCTTTTCCTACATGGCAAATTCTATACCAGTGTCGTCATTATAGTATAGAATAAATGCTAAAACAATAAACCCCCTTCTCACTGTCGTTGTTAGTTTTTCATTTGTTATCTCTTCTCCATCTTCTATTTTCACACCACATATTCTTCCTTAAACTCCCTGAATTCATGTCAACATAACAACAAATTGAACAATTTGGGTTTTCAGATTAAAAAAATATTAAGGTTTCCAAATTAAAAAAAATCAGAAATTAGGGTTTTCAATTCATGCAGAAATTGAACAATTTTCCCCAAATCAAACAATCATCAAAGAAGAGAAGAAGAAACCAACCTGAGAAGAAGAAGAAAGACAGCGCCTAGGAAGAAGAAGAAGAAAGCTCGCGAGAGAGACAGCGCCTGAGGAAGAAGACAGCGCCTGAAGAAGAAAGCTCGCGAGAGAGACAGCACCCAAGGAAGAAGAAGCCATTTTCTGGTTATGGTTCGGATTGGCGGTGAGGAGGAGCGATTATGCTTTTCAGTGGTGGAGATGAACTGTGGTTGAAGAGAGGAAGACGAAATGGTGGTGGTGAGAAGCGAAGGACCGGCTGAGCACAACAGGGGTGGAGGCTGGTGGAGCCGGAGAGTGAAAGGTGAGAGGGAGAGGGAGTGTGAGGGAAGTTCAGAGAGGCAGCGTGAATGAAGTTCAGAGAGCACAACATCGTGAGGAATGCGTGAAATGAGGTGTGTTCGTGGGAATAACTTCCCTTTAATTTGGGAAATGTTACTTTGCGACGAATATTCAGACGTTTCCGACGAAAATATCCGTCGGAAATTTGCGACGGAAAACAATTTCGTCGCAAACGTAAGCGGGAATTTTAGCGCCTCTTTTGCTGAACATTTGCGACGACTTTTTCGTCGGAAATCCGTCGGAAATTGCGACGAATAAGAGTTCGTCGGAAAGTTTCGAAGGAAACGGGGCTTATTCTTGTAGTGATTCCTATAACTAATATCTCCCAAAACCACACAAATAATAGTAATTTGATAATTAAGAAATATAATGTATGATTATAAATATGTAAGACATAATAATATATTTTCTAAATATATGCTAATAAAAAAAAGGCATACACAAAATATCGCAAAATTGCTAATGTATGCACATAAATTAATAACTAAAACGGGGTGTTACACATGGAGGGTTCCTGAATTCAAAAATTCAAGTGTCATATCCAGTATTGACATGTTGTTGCTTGATGAGAAGGTAATGTCAATACCTTTATTTTTCAAATAGTATAGTATGTTAATACATACTCTAACTTTTTAAAGTCGTTATATTTTATTTCAGTGGGAACAAGATTGTATGTACGGTGAAGAAAATGTTTGTAGAGGAAATGAATCAATATCTTGTAGATAACGGTGCTGAGAGTTCTGTCATTCTAAGTTTGTAACTTCGTAGAAGTCGATCCTGAAATGGTATATTTTTCTATATCAATATTTGATTTATATGTGTGTGCATATTTGATTGTCTTTTGTTTAATACATATACTTTTTTTTTAATTGACCGATAGGACAATTGGGAATAACAAGTGCTTACAATGGAACTAAACGTTTTATCAATGTCGGCTTACATGAAGTTGTTGAATACAAGGAGCAATAAGAATCTAACTTGATATATTTCATAAGGGCCCCATGGGCGGGAAATTTTTCCCCATAAGGACTGGACGAGGGAGAAAATCCTTTACGGTCATTTCGGAGACGGGGACAAGGGCCATGTCCCCGTGCGGACAAAAGCAGCGAATGAAAACTTCTCATGACGGGAATTGGGGGCAGAGAAAAGTTTCGAGGACGAGGACAAGATGTACCATACCCCTCAGGGGACAAAGCCGCGGTGGGGATTTCGTGGGGAAAGGGACATGAGAGTGATGGGACATGGAGTACTCATTGCCGTTAATATATGTGAAAGAACTTTTTAACGTATAACTATGTGACAACCATTGCTAGCTATATCAATTGTTATTTATTTTATACAATTGTATCTTATATTAAAACAAAACAAGCAACAATTGTATTATCATTTGCCGATGAATATGTTATATACAAGGAGAATTCTACCATACTCATTGAGTTTTGATGAATATGATACCCTATTAACAGAAATATAACAATATTTAAATATACAAATAATGAGTATATACAATTTTTTGAAAATATCAAAACTACAATTCTTTTGGTAAATATCGTATAATTTTTTTATAAAAAAAATAATTTTATTGTCCATAGCTTTTGATCTGGTTTACCATTTAGAAAGAGTTTTCCCTCGGATAAACTTTTTCCAAAATAAGCGTGCCTTTTGCCATTTTACAAAATGAGTTTGGTCTAATATGCCCTGCCATTTATGGCGGTAAACTCGCTTAACGTTTAAGATGTCGATCCTTGAAATTCTCTCTTTTCTAATTTTCCCGAACTTGACTCCGTTTCTCGTGACTTCCCAGAAAGAATATTTCCTTTTCCTTTTTGTTTTTTCTTTTTACTCTTTCCAAAATTATAAGAATATTTAATGGCGTTGTGTATATATATTCAAATTATTGTCAGAAGATTAATCCAACGACGACTATCAAATCTCAGCATCCAAACAGAAAATCACAACCAAACCCTAATCTAAACGATCTTTCCCTCCCTTACCCCTCTCTCTACATTTTCTCTCTCCTCTTCTTCGTTCCCCTCTCCTCCGTTAATCACCGTCATCCATTTCTCACCGCCACCATCAGATCCAGAAGTTTCTAACCTTCTTCACCACTTCACGCGCCCATAAAACTGGATCACGCGCCTGTCTCCGCATCTATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00628.32	PHD	629	674	1.20E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	PHD

Gene Ontology

GO term	Description	Category
GO:0042744	hydrogen peroxide catabolic process	Biological Process
GO:0006979	response to oxidative stress	Biological Process
GO:0098869	cellular oxidant detoxification	Biological Process
GO:0004601	peroxidase activity	Molecular Function
GO:0020037	heme binding	Molecular Function

InterPro

InterPro term	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR001965	Zinc finger, PHD-type
IPR019787	Zinc finger, PHD-finger
IPR011011	Zinc finger, FYVE/PHD-type
IPR020549	Endoribonuclease YbeY, conserved site

trEMBL

trEMBL term	Description
A0A371DYT3	_

SwissProt

SwissProt term	Description
Y1342_ARATH	PHD finger protein At1g33420

KEGG

KO	Description	Enzyme
K26271	PHD finger protein MS1/MMD1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G33420	RING/FYVE/PHD zinc finger superfamily protein
Medicago sativa L.	MsG0180004201.01.T01	_
Oryza sativa L.	LOC_Os01g65600.1	PHD-finger domain containing protein, putative, expressed
Cucumis sativus L.	Csa013229	_
Glycyrrhiza uralensis Fisch.	Glyur000129s00012435.1	_
Codonopsis lanceolata	Cl_chr03_56240T	_
Arachis hypogaea L.	AH09G19240.1	PHD finger protein At1g33420 like

Expression pattern