Gene detail

Detail information of Am02G024170.1 Annotation

Gene ID	Annotation
Am02G024170.1	Ribosomal protein S3 family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G024170.1	mRNA	Chr02	155465472	155468010	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM02G024170.1
AATCAACGGTATGTTTTTTGGCCCGGCCCGATTGGCCCGATGATATTATTGGGCTGGGTCGTCCCATGGGCTTCGGACCGGCCCGTTTCTTTTTTGTTTTAATTTTTTAGTTTTAAAATATGGTCCAACATGAAAATGGAGCAATTTTTTTAAGTAAAAAAAATAATAAAAAGTAAAGAAAAAAACACAATAGTGTCGGTGAATAGAATATGAACAAGAAAAATATCACAAAAAACACGTTATTCCACATACAAGACCAGCCAGCAGTATTCACCCGGCAATGTACCCACAGACTTTTGTATCATTGGGAACAACTATATAAAACTTCCCCAACTGAAACAGAGTAAAGTACCTCATCTCCTGCATCCAGTTCAACTTGTCTTTTCTGAATTTCTTCACGTTGCTTTTTAAAATTTATGTACTCGTCAAGTGCTTTCTTGTTTACATGACTAAACTGTTGCAATTGCTCATTGCACCTGTGCAGCATTTTGTGTAAATCTCTAATATTGCTCCGTTTGTACCTGTCATGTCCAATGAAATAAATGAAAAAAGTTAATTAAAGTTAGCAAAGACCAAAGTACTGAGAAATTGTAAACTACACCTTGGAAGTCATAAATTGTATGTTGCATTGCAATTCTTATACAAAGACCGCCATTGCATTTGGGTTTTGTGGTAGTGTTCCATCCAACCATATGTATGCATTTGCCACTATCACCTTGCCATATGAAGTTCCTTATAGAACGATCGACATGGTCACAATTTTTTTGGGGAAACCACTGTATTTGCATGCCATAAGTTGGAATTGATGCCAAGATTGAGTTCCCCAGAGTCAACCTTCTCGCTTTGTTCATAAGACGACCCTTCCAAGAAGCGAGTTTTGAGTTGACTCAATTCACCACTTTCTGAAAATCATCCTTCCTAACCCTCCCTTGAAACACCTTGAAGCCCGAATACTGCCCAATTTGGTTAGTAAAGGCAATGCTTGTTATATGCCTTATTTTTTTCCTTCTTTGAAGCTTGCATTCCTTTTGAAGCAAAAATAATAGACGCGACAAGGCTAACCCTCAACCCCAAGATGGTGCAAAAACTCTCAAGGATATCTTTGATGAATTTAGCTTGAGAAACTTTAGCATGGGCAAAAAGCAACACATCATCGGCCAAAAACAAATGAGAAATAGAGGGTCCATTTTTTGATACCAGAATAAGATGCCACCTCTTCTCCCTAACCTCCTTGGATATCATTTCACCGAGACGTTCAATTCACAAAACAAATAAATAAGGTGATAAATGATCACCTTGTTTTTTTTTAAGGAAAATGATCATCTTGTTGCAGTCCCACAGTTACCATTTCACAACAAATAAATTTTTGAAGATGAGATTCCATAAAAAATCAAATTAATAATGTTGTTCGGAAACTTATACATTATCAATGTTTCTCTTAGGAAATTCCAATCCACACGATCATAGGCCTTTTTCCAAATCAAGCTTAAGGATCATATCCCCTTTTTTACTCTTCTTTCCAAAGTGATGAACCACCTCTTGTAAGACCAATACACTATCCTTTATTCATCTCCCTGAAATGAAGCTACTCTGGAAAGGACTCACAATAAATCCAAACGAGGTCTCATCCTGTTCATCAAAACCTTAAAGATAATTTATAAAGCACATTACATATATAATGTAATTGGTCTAAAAGGGCTATCTCCCTTAGACTATTTACAATGGGGTAGTTGAAAAATTTATTAAGTAGTTGAATAGGTGTAATGGGGTGTTGAATGGGTAGTTGAAAGGGATGTGGATTATTTGGTGTTGAATTTATTCAACATGTTGAATGCTGAAATAGTGGGGTCCGCGCGGAAAACATGGCGAATTCTGATTGGCTGCTGTGATTTTTGACATTTTTATCTCATCCTAATTATTTGGGGTCAATTATTTCATAGTAAATCATTTTTTTTTAAAAATTTTTCCACCAAAATTCATCATTTTTTTTGTCTACAAATAGAGACTTGGTTCATTTGATTTGGGCACAGAAAAAAAAATCGACTATTTTTCTCTAATTTTTCTATATAGCCTCCAATAAACTCTTGTTTGTAGATCTAAACATCTTTTTAGTGAAATGGATCTCAACAATAACCCTTTTAACACCCAATATTCTATTAATTACCCTTTCTATTAATATGTAATCACAAAAAAAAAAACATAAAAGAAATGAAGAATATGAAATAAAAGTGGTGGGGTAGGTTGTTGAATTTTATTAAACAAAACCATTGTAGTGAATAAAAGTTGAATGAGTGTTGAATTATTAGGTGGAAGAGAGAGAAGATGATGTGGAGTGTTAAAAAATGAAAAAGGAGGGTGTTGAAACATCAAGAGTGTTGAAACCAGTGTACATAGTCTTAGAGATAAGTTTATAAAGCAACACATATTTATACTTCTAGTTTCTACTTGATGATTATTATTATTATTTTTTATTATTTCATGATAATTCAAAGATTAAGTAGTTTTTATAAAATCACGACTTTGTATCTTTATTCTTGTAAAAATTTTATTTATTTTGGTCTTTATTTAACAAATGTGCAGTGTTTTTTTACAATAATATTTATACTACATCCAATGGTCATATTTAATGGTTCACCGGTTAGAGATTTGATTTACTCCCCCACCCTAGAAACACTCTAGAAACTGAACAATAATATTTTTTACACAAAATAAAAAGTATTTTCAATTTTATTATAAAGCTTAATTTTAATTGATTTTCAATAAAAATAATTAAAATCCTTTCGGTTTTAAAATTCAAGTAATAGTTTACCAAAAAATAAATAAAATTCAAGTAATAAATATCGTCCGTTGATCACCTAAAACTACCGACACCGTTGGATTGATTATCCCTTCCGAATATAAATTCACTCTTAACTCTTCAGCCGTGCTCTGCTCCAAAACTAGGGTTTGCAATCTTCAGCGCTTGCGTGCGTAGCTGCAGATTTCTTCAGATTCCCAAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00189.23	Ribosomal_S3_C	106	188	8.00E-26
PF07650.20	KH_2	20	93	2.10E-13

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0006412	translation	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR005703	Ribosomal protein S3, eukaryotic/archaeal
IPR036419	Ribosomal protein S3, C-terminal domain superfamily
IPR001351	Ribosomal protein S3, C-terminal
IPR018280	Ribosomal protein S3, conserved site
IPR015946	K homology domain-like, alpha/beta
IPR004044	K Homology domain, type 2
IPR009019	K homology domain superfamily, prokaryotic type

trEMBL

trEMBL term	Description
A0A445GL33	_

SwissProt

SwissProt term	Description
RS33_ARATH	Small ribosomal subunit protein uS3x

KEGG

KO	Description	Enzyme
K02985	small subunit ribosomal protein S3e

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G35530	Ribosomal protein S3 family protein
Medicago sativa L.	MsG0180000118.01.T01	_
Oryza sativa L.	LOC_Os07g41750.1	40S ribosomal protein S3-1, putative, expressed
Cucumis sativus L.	Csa009897	_
Glycyrrhiza uralensis Fisch.	Glyur000111s00011056.1	_
Codonopsis lanceolata	Cl_chr01_45640T	_
Arachis hypogaea L.	AH13G26880.2	40S ribosomal protein S3-3 like

Expression pattern