| Gene ID | Annotation |
|---|---|
| Am02G023540.1 | pentatricopeptide (PPR) repeat-containing protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G023540.1 | mRNA | Chr02 | 153293064 | 153304948 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 297 | 338 | 8.00E-104 |
| PF13041.9 | PPR_2 | 333 | 374 | 8.00E-104 |
| PF13041.9 | PPR_2 | 465 | 514 | 8.00E-104 |
| PF13041.9 | PPR_2 | 535 | 584 | 8.00E-104 |
| PF13041.9 | PPR_2 | 578 | 614 | 8.00E-104 |
| PF13041.9 | PPR_2 | 605 | 653 | 8.00E-104 |
| PF13041.9 | PPR_2 | 643 | 689 | 8.00E-104 |
| PF13041.9 | PPR_2 | 710 | 759 | 8.00E-104 |
| PF13041.9 | PPR_2 | 749 | 793 | 8.00E-104 |
| PF01535.23 | PPR | 329 | 358 | 3.70E-93 |
| PF01535.23 | PPR | 714 | 743 | 3.70E-93 |
| PF01535.23 | PPR | 749 | 778 | 3.70E-93 |
| PF12854.10 | PPR_1 | 531 | 564 | 2.50E-91 |
| PF12854.10 | PPR_1 | 672 | 704 | 2.50E-91 |
| PF12854.10 | PPR_1 | 708 | 739 | 2.50E-91 |
| PF12854.10 | PPR_1 | 742 | 774 | 2.50E-91 |
| PF13812.9 | PPR_3 | 316 | 372 | 5.00E-85 |
| PF13812.9 | PPR_3 | 419 | 478 | 5.00E-85 |
| PF13812.9 | PPR_3 | 489 | 549 | 5.00E-85 |
| PF13812.9 | PPR_3 | 523 | 576 | 5.00E-85 |
| PF13812.9 | PPR_3 | 575 | 614 | 5.00E-85 |
| PF13812.9 | PPR_3 | 669 | 720 | 5.00E-85 |
| PF13812.9 | PPR_3 | 734 | 789 | 5.00E-85 |
| PF13812.9 | PPR_3 | 769 | 824 | 5.00E-85 |
| PF17177.7 | PPR_long | 308 | 381 | 9.90E-55 |
| PF17177.7 | PPR_long | 391 | 486 | 9.90E-55 |
| PF17177.7 | PPR_long | 484 | 614 | 9.90E-55 |
| PF17177.7 | PPR_long | 591 | 708 | 9.90E-55 |
| PF17177.7 | PPR_long | 684 | 825 | 9.90E-55 |
| PF00076.25 | RRM_1 | 150 | 222 | 1.40E-12 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT1 |
| GO term | Description | Category |
|---|---|---|
| GO:0010467 | gene expression | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| GO:0003677 | DNA binding | Molecular Function |
| GO:0019538 | protein metabolic process | Biological Process |
| GO:0032774 | RNA biosynthetic process | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR002885 | Pentatricopeptide repeat |
| IPR033443 | Pentacotripeptide-repeat region of PRORP |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| trEMBL term | Description |
|---|---|
| A0A1S2Z4D1 | _ |
| SwissProt term | Description |
|---|---|
| PP365_ARATH | Pentatricopeptide repeat-containing protein At5g04810, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| K17710 | pentatricopeptide repeat domain-containing protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G04810 | pentatricopeptide (PPR) repeat-containing protein |
| Medicago sativa L. | MsG0180002024.01.T01 | _ |
| Oryza sativa L. | LOC_Os04g58780.1 | pentatricopeptide repeat protein, putative, expressed |
| Cucumis sativus L. | Csa012469 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000224s00017383.1 | _ |
| Codonopsis lanceolata | Cl_chr07_15240T | _ |
| Arachis hypogaea L. | AH02G13600.1 | Pentatricopeptide repeat-containing protein At5g04810, chloroplastic like |