Gene detail

Detail information of Am02G022410.1 Annotation

Gene ID	Annotation
Am02G022410.1	cyclic nucleotide-gated channel 16

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G022410.1	mRNA	Chr02	149325172	149331978	-

Sequences

CDS:

>Am02G022410.1
ATGGGAGGGAGGGAAACCAGCAGAGGGGGAGAGAATGAGATCAAGATAGAGAAGAAAGAGGGGCTTGCAAGAGAGGCGGTATCATCATCACATCATTTCCGTGGCCGATTTCCAAAATCATTCTCTCTGAGGAAGAAAGTGCCATGGTGGTATCAAATTCTCGATCCTCGTTCAAAATTCATTGCACGATGGCATCCCGATCTTGTTCTCCGTGTCTTCGTTACCATCTTTCGCACCGTCGCTGATTTCTTCTTTCTCTTTCATATGGTTCTTAAGTTTCGTACGGCTTATTTTTCTCCTAAATCTCGTGGTTATGGTCAGAAAGAACTTGTTACTGATCCTAAACTGATCGCTCAACGTTATATTAGGCATGATTTTATCATTGATCTTCTTGCTAGTCTTCCTTTGCCTCAGATTGTTATTTGGGTTGTGATTCCAGCTACGAAAAATTCAACGGCAGCTCATGTTAACCACACCCTATCGCTAATCGTTCTGATTCAATATATTCCAAGGTGTTTTCAGATTTTTCCACTGCAACGACGAATCTTGAAGACTAGCGGGCTTATAGCCAAAACTGCTTTGGCAGGGGCATTGTACAATCTTGGTTCCTACATGCTTGCCAGCCATGTTTTAGGAGCTACATGGTATGTGTCGTCAATTCAGAGGCAATACGAGTGTTGGAGAATAATGTGCAAGAAGGAGATGAACAGAACGCACTCTCCCTCTTGTGATCCTTCTTTTTTTGATTGTACTACCATTTTCAACCATGAACGCCAAGCTTGGTTCAGACGCACTAGAGTCCTCACCGATTGTGATGCCCTCAATGATAAAAACCGCTTCCAGTTCGGAATGTTTGCTGATGCTTTTACTGATCATGTGTCTTCATCAAGATTCTTCCAAAAGTATTTTTATTGCCTTTGGTGGGGTTTGAAAAATCTAAGTTCATATGGACAAAATCTTCAGACTAGCACTTATAGTGGTGAAACATTATTTTCAAGTTTTATCTGCATAGCAGGTCTTATCCTGTTTGCACATCTCATCGGTAACATGCAGAATTATCTGCAATCTTCAACTGCAAGACTTGAAGAATGGAGACTCAAACAAAAAGATACAGAAGAGTGGATGAATCACCGCCAACTTCCACTAAACCTACAAGAACGTGTTCGCCGATTTGTTCAATATAAATGGCTTGCCACGAGAGGTGTTGACGAAGAAACAATTTTGCGTGCTTTGCCCGTTGACCTTCGCCGCCAAATTCAAAGGCATCTTTGTCTTGATATTGTTCGACGGGTACCATTTTTTGGCCAAATGGATGATCAACTTCTAGATGCTATATGTGAACGTCTTGTTTCATCCTTGAACACAAAAGACTCATACATAGTTAGAGAAGGTGATCCAGTAAGAGAAATGCTTTTTATCATTAGAGGACAAGTAGAGAGCTCAACAACAGATGGTGGTAGATCAGGATTCTTCAACTCTATCACGCTCAAACCAGGGGACTTTTGTGGTGAAGAATTGCTAACATGGGCTTTGATGTCAACATCAAGTCTTAACCTTCCATCTTCCACGAGAACTGTGAAAACACTCACTGAAGTTGAAGCATTTGCACTTAGGGCTGAGGATCTCAAATTCGTATCGAGCCAGTACTATTCCCATCAGTGGAGAGCTTGGGGGGCTTCCTTTATACAAGCTGCTTGGAGACGCCACCGTAAGAGAAAATTGGCAATGGAGTTATTAGAGAAAGAGAACTACACAAATATGGAGGAGCTAGAAGATTATGAAGATATTGACGCGGGAGAGAGTTTCATGGGAGATAATGCTGGCCCTTCACAGAATTTCGGGGCTACATTTTTGGCTTCAAGATTTGCTGCAAACACTAAGAAAGGTGCAGTTAAAAAGGTGACAATTCCTGATAGTAACAGTTTAAAGATGCCCAAGATGTTCAAGCCAACAGAGCCTGATTTCTCAACATTAGAAGATTAG

Protein:

Promoter(3k):

>AM02G022410.1
CATTCATATCATTCCTTGAGTTCTCTTTGTGAACCATGTCTGTACCCACAAAGTTACCTTGTTTTAGTTGATCATTCCCAAACCAAGATTGAAAGTATTATGACACAAGGAATAAAACACAAACATCATAATATTATACAAAAGTTACTCAAGGTTCATTACATACCAAGAACAATCCAACTACAACAAAGTTAGCTCATCACAAGTTCCATCAACATAATACACTTAGAGAGTATGTATTACCGTATGAAGACAAGAGAAGAGTGGTTGCAAGAGATGCACACCAAAGATCCCAAGTAGCATACGAGAGATGAAGTTGAGGCGTGAGCAAAACCTTGAATGAAGACTTGAAGAACTATTCTAAAAAATAAAAGCTTAAAAGTAGTGTATCAATGGAGAATAGCTACTACGTATGTGTGTAGTTCTTCTTCCAAAATTACAACAACTTGTCTACGTATGTTACCTCCTTGAGAAGCAATCTTAATTAATCTAATTAATATCTAAGTCTTAATAGAATAATAATATTACATGATGATTATTAGACTTAGATATTATCCTTAAAGCACTTTACAAAAAGTGGTAATGATGGAATACAACAACTATCACATGGGTTCCATTTAGGAGGCGCCAAGTGTAATTTAGCATCCACTTGAAAGTCAACAATTCCAGCTGAGAGGAAGAGATAAGGGTGGTGACTCATCATGTCCTCAAGTGGCCACACAAATATCTCAATGGTCAGCCGTCATATAACGCTGTAGCGTCTCGTAGATAGCACACCGCTGCAGCGCTAAAGCAAAACATCAAACATATTCACAAAGGCATTGACTATGCCCAAGGTTTCAGGGAATTAACTTATAACCTATATTTATCCTAATATTCATATATTCACATATTTAAGTACTAAGCTTACTTGAGAAGTAAGCTTAATTTAAGTATTAGGAGCATAAATAACCTATATAAAATAGGGTTATCAACCCCCCCCCCCTTAAAGAAAAATTCGTCCTCGAGTTTAACTACTTCTACTATAACCTTGGTATTCGAATAAGTCTGGATACTTTTCATGCATAAATTCTTCGAGTTCCCATGTTGTGTATTCATCAGATGGCCCTTTCTAAAGAACTTTTACCGAGACTGTCTCTTTCGAGCATAGACGTCTCACCTGCTTATTAATAATGGCTATTGGATGTTTGATGTAAGAAAAATGTTCATCTTGTTACACGTCTTCATGACTAATCACATGAGAAAGGTCATAGAGATACTTCTGAAGCATAGAAATGTGAAACACTGGATGAACTCTAGAGAGATCTGGAGGAAGCGCCAAGCAATAAGCTACAAGTCCGACTCTCTCCAAAATCTCAAATGGTCCAATAAACCTAGGACTTAGCTTACACTTCTTACCAAATTGCAATACTCCATTCTGTAACATTCCTAATTTTGTTAATTTCGGATTACGAAATTAACTAACGATTTAATTATTCGATTAGATAATAAATCGGATCATGGATATGACAATTTCGTGGAAACGATGTTTAATCACTCAAGCATATGAAATACGCACAAATTATTCGAATCGTGTGAATTGTAATGGGAAATGGAGCGCAAGGGTAAAATCGTCATTTCGCCTCTTATTGTCGATGTGTCATTTGATGAATGATAAACTGGATCCTAGTCATGGTAAAATCATGAGATTGGTAGTTAAACTCCTAAACCTTATGAATGGATGAGTGCTTGATGGATTAAGTTGAGAATTAGCAATAAGGGCAAAATGGTAATTGCAGCCTTACTAAAATTCCTCTTCAGATGAGAATAATTATCTCATTCAGTTCTCTCACTCTCACTCACATAGAATTCTGAAATTTTTAAAGGAAAGAGAATGGAGAAAGAAAGGAGAGTTTAGAGGAAGGATTGAGTGGAAATTGTGCATAAGGGTATTTTAGTCCTTTAACCTTCCAACACTCCCTCAGCTCATTAAAACAGTACCCCATCCTCATCATTCTGATATTCAAAGATTTCTGAAACAGAACCAGTGAAAGAGAATAGAGAGAAGGCATGAGAGAGAAGGGAAAGGGTAGGAGAAGAGGAAGTGAATCCTCATTGCATGTAAGAACCAAAGCCACCATCCTTCTCCATTTTTAATTCTCTTTCCATTGGTAGTAATCTTGCTAGCTGATTCTCCATCTTTTCCCTCTTCACCATTTTCGAATATTGAGCTCCACCTTGACCAAACTCAGTTTTCTAACATTTTATGGTGATCTTGGGAAGCATATGAGAAAATCCTTGCAATTTGAGAAGCCACATTGAGGAGGGAAGCAAACTCAGGAGCTAGGGACCCTAAAACTTCGAACTTGGAGCTAATTGATGGTGTAATTGATACCTTGGATGAATTTGGAGCTTGAGAAGCCACATTGTGATGTAATTGATACCTTGGATGAATTTCGCCAAGCTTCTGGGCTGGAGTTAATCTTGCCAAATCCAAAGCAATCTACTATTCTATCTACTTCCTCTATCTATAGAGGGGATACTGATTCTCTCGTATAGTCTATCTCTCTTTGAAACTAGTTTTTATTTATTTATTTTCCGTAATAGATCTAATGACTGTTAAGTGTGTGAATGTTGTGACTACAGTCAAACTTGACCGTAGTGGATCGTCATCCCTATTGAGGAGGGTTACCCACTACAAAAAAACCATTTTTACCCTTATTTACAATTTTGACACCTCATCTATAATTTGCCCTTTTGTGTCCATTTAGAAAATTTGAATTTTGTATCCTCAAATCCTGTCTTTTTTAACTTCTCCCTCTCGAGTCTCCACAATGTAGTCACCATCTCTTTATCTTCTAAACAAGTACCCAGCACATTCTCTTCTTCCATTACAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACTTGCTTTATGTTTTCTCTCCTCGCCTTTCTCCTTTCTTTGTCCCTTTGTTTTGAAATCGATGAAGCCCTACTATCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	72	360	3.60E-30
PF00027.32	cNMP_binding	456	545	6.60E-09

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0006396	RNA processing	Biological Process
GO:0022832	voltage-gated channel activity	Molecular Function
GO:0015079	potassium ion transmembrane transporter activity	Molecular Function
GO:0004000	adenosine deaminase activity	Molecular Function
GO:0003723	RNA binding	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0A1S2YBX9	_

SwissProt

SwissProt term	Description
CNG16_ARATH	Probable cyclic nucleotide-gated ion channel 16

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G48010	cyclic nucleotide-gated channel 16
Medicago sativa L.	MsG0380016434.01.T01	_
Oryza sativa L.	LOC_Os12g06570.1	cyclic nucleotide-gated ion channel, putative, expressed
Cucumis sativus L.	Csa005198	_
Glycyrrhiza uralensis Fisch.	Glyur000915s00038247.1	_
Codonopsis lanceolata	Cl_chr02_18860T	_
Arachis hypogaea L.	AH15G21790.1	Probable cyclic nucleotide-gated ion channel 16 like

Expression pattern