Gene detail

Detail information of Am02G022160.1 Annotation

Gene ID	Annotation
Am02G022160.1	RING-H2 finger C1A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G022160.1	mRNA	Chr02	148441791	148444337	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM02G022160.1
TGATTGTTGTTCTAATGCCAAAGACCTCGTATATATAGCCACCACAACTAGTCACATAAGAAGAACCAGATACATTTAGGGTAGCTTCATAAAATATTCTAAGATAGGGAATGATTGCCCGCACATACTCCCAATCATCATACGACGGGACACCTTTCTTCTTTTCTAACTCCTCGACAAATTTACCATCTTGCAACTCCAACTCTTCAAATGTTTTTTGATGTTTAAGCGCGGCATCTAACATAATGTAAGTTGAATTCCACCTCGTTTCACAATCCAAGCCAACATAACCCTTATATTCCATGTTAGGATCAATACATGCCTTGAATTTTGCATATCTAGTTGGAGTGTCATTTATAAACTTCACTGCACTACGAATTCTGATAATAGAATCATCAATCTCTTTAAAACCATGCTTCACAATCAAATTTAAGATGTGAGCTCCACACATGTGAAAGTAGTCACCACTTAAAACCAAACAATTCTGATAATGTATTAATATTATATAAGCATGACAAGCAAATATCAACGGTGGCATGAATAAATATAATATCAGCTTCACTCATTTGTTTCGTAGGAAACAAAAAGAAGGGAAACAATCTTGCTCACATTATCTGGAATTGTAAACTTCTTAAAAAATGATATAAACTAGTTATTTTCAAAAGTATCATAGTGAAACTCGAAAATAAGCAACACGTAATGTTGAGGAAGATTAACAAAGGCAACTCTCACTCTGTATGACCAAGACAGAAACTCTGTACACAGAATTAAACATTGAAGACAGAAACTAGTAACCTGTGATTTAAACATCATTACAAACATACTAAAAAACGAAAAGTTCCTTTAGACCAAAACATCATTACACAGAATGCACATTGAAGATTGAACAGGTAGAAATATTAGGCCTCGTTTACTTTGATTTCAAATTTTCATTTTTTGTTTTCAATAAGATACACATGCTAGTATACACATAGCCCAGGAGATGATATACAAAACGTGATGATATACATAGCCAAGAAGTAGATTATTTGAAAATAGTGAAAATGCTATAAAGTTGTTTTCATATTGTCAAATATGTTCATTCTTCTTACACTATTAATCTTCACTTTAAACATGTTTGAATTTCACAGAACCTTACCCTGAGAAGACCGAGTTGCAGAGAGGTGAAATTCGAGGGATTTGCAGAGAGAAGTCCGAGTTACAGTTCTGATTGGAGATTGGCGATTCCGATTTGGGGATTAGGGTTCCGGTTGTGTGAACATGGCTGAGGTTGGAGATTGGCGATTCCTTATCGAAGGAGTGGAGGTCGCAACTCGCGAGTGGCCATGGCTGAGGTTGAAGAAGGAATGAAGGAAGCGAAGAAGGAAGCGAAGGAAATGAAGTTCTCGTGAAATGAGGTGAAGCCGTGAAGGAATACTGTACCGGTTTTTCAGTATTCCATACTGTTGTTATGGATTTTTTACCAAAATGATTGGGCTGGACTTTTTTAAAAGTGGTATGGGCTTTTAGGAACAGTATGGTATGATTTATGGTATGGTTAGAGTTTACTTGTTACTTTGCACACCCCTAGGGGTTACAATAAAAAACCATAGAACAAATTTTGGAGCATGGTGATGCCAGCTCACTGGACGTGGGTTTTCGTTATAAAATCTGTTTCTTATGCCCTATCATCGTGTTCAATAAATGATGCTGTCACGTTCGAATGAGGTGTGAAGAAAGAAGGAATCAACAACAAACAAAAAAAAAGAAGAGAGCGATGCAATGAATAAATTAATAACGGTAAAAAAAAGAGTGATTATTTGTTAGGCTGTTAGGGTTTCATTCCGATTTTGCAGCGAGTTAAATAAACTCCGCTTCATAAATGTGCTTCTACTTCTTTCTTCACACTTCACACTCACTTATACATAGCCTTCACTTCTTCGCGCTCGGTACGATGTTTCTTTCCCTTTTCTTTTGCATTTTCCGTTTCTATTTTTGTCAATCGAATCGTAGTTACTATTATTGTTAGATTAGATAGAAAAATATATTGATGGGTTTGGTTTGTTGAAGAAGCTTCTAGAAATTAATTCCTTCACACTCAGTTCCCTTTTCCTTGTGAGGATTTCAAAGATCTTAAAATTCCCAATTTTTGAAAGCCAGAAATTATTAAATAAACGTATATTTTTAATTTTAAAAAACGCTTAATCTAGGGAATTTCATGGGATAAAAATAGTTGTTGTAGTTTTGTTTGTAAGCATAATTGAAATGTCAGATTATGTAGTTTTTGAATCTGGTACTATGAGTCACCGACACTTTTCTGCGTGTTTCTGTGTCAAATGCAAGTGGTATCTCAGAAAGTGCATACAAATTTCAGATTTTGTTGCGTTGTCTTTGCTTCTTAGCTGGAAAGTCAATTCAGGGTCTATTTGGATTGCCTTATTTGGAGTTATTTTCCTTAGTTGTTGAGTTTCAGATTTTATATTTTATTTTAGAAATAGCTTATACATTAGCACTTATATGATAAGTGCTTATAAGCGCTTATATGATAAGTGCTTATAAGCGCTTAATTAAGTTGTTTATCCAAACAACTTTGAACCGGAAACAAGTTATTCTTATATTCAAATACTTGTAGAAATAAGCTCTAAATAAGTTTGTTTTCAAATGTCGCTTATATTTATTGTTAAAAGGCTTAATTCTGATTCATGTTATTTACGGATCATTGATAAATTTGATATATGCTTCTCAGATAAGCATTGACTCTTACTTTGTATAACTAGTAAATACACTGCTTCATTATTCACCACTCTTTTATTTGTTCTGTTCAGCAGCATAGTAGGTAGTCTAACTGGTGGCTGATGTTAAAATCGATGTTGTATCCAATAGCTACTTATTGACTGTTAGCTAACTTATTTTGCAGCATCAGTTATCATGCTGCTGTAGCGGTTGAGATAACAAAGTGTCGGGAAGGATCTTTGGAATCGGTTGTTTGACTTTGAGACGGTAAAGGAAGTGAACAAGAGG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	189	231	3.40E-12
PF14369.9	zinc_ribbon_9	6	37	3.50E-12
PF13923.9	zf-C3HC4_2	190	230	9.90E-10
PF17123.8	zf-RING_11	190	217	4.20E-08
PF13445.9	zf-RING_UBOX	190	228	5.40E-07
PF12678.10	zf-rbx1	187	231	6.00E-07
PF00097.28	zf-C3HC4	190	230	6.50E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0061630	ubiquitin protein ligase activity	Molecular Function
GO:0016567	protein ubiquitination	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon

trEMBL

trEMBL term	Description
V7BKB9	_

SwissProt

SwissProt term	Description
RHC1A_ARATH	Probable E3 ubiquitin-protein ligase RHC1A

KEGG

KO	Description	Enzyme
K11982	E3 ubiquitin-protein ligase RNF115/126	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G40830	RING-H2 finger C1A
Medicago sativa L.	MsG0180002499.01.T01	_
Oryza sativa L.	LOC_Os03g22830.2	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa002688	_
Glycyrrhiza uralensis Fisch.	Glyur000834s00025311.1	_
Codonopsis lanceolata	Cl_chr05_36170T	_
Arachis hypogaea L.	AH02G15340.1	Uncharacterized protein like

Expression pattern