Detail information of Am02G021760.1 Annotation
Gene IDAnnotation
Am02G021760.1 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am02G021760.1mRNAChr02147095439147099266+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF00400.35WD404454801.50E-44
PF00400.35WD405285651.50E-44
PF08799.14PRP41531792.30E-12
Gene family
Gene familySubfamily
Ubiquitin FamilyDWD

Gene Ontology
GO termDescriptionCategory
GO:0046540U4/U6 x U5 tri-snRNP complexCellular Component
GO:0000398mRNA splicing, via spliceosomeBiological Process
GO:0030621U4 snRNA bindingMolecular Function
GO:0004523RNA-DNA hybrid ribonuclease activityMolecular Function
GO:0005829cytosolCellular Component

InterPro
InterPro termDescription
IPR036322WD40-repeat-containing domain superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamily
IPR019775WD40 repeat, conserved site
IPR001680WD40 repeat
IPR036285PRP4-like superfamily
IPR014906Pre-mRNA processing factor 4 (PRP4)-like
IPR020472G-protein beta WD-40 repeat

trEMBL
trEMBL termDescription
A0A9D4W0M6 _

SwissProt
SwissProt termDescription
PRP4L_ARATHU4/U6 small nuclear ribonucleoprotein PRP4-like protein

KEGG
KODescriptionEnzyme
K12662U4/U6 small nuclear ribonucleoprotein PRP4

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT2G41500 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
Medicago sativa L.MsG0180002677.01.T01 _
Oryza sativa L.LOC_Os03g23935.1WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.Csa016478 _
Glycyrrhiza uralensis Fisch.Glyur001204s00024993.1 _
Codonopsis lanceolataCl_chr04_45360T _
Arachis hypogaea L.AH01G27310.1COMPASS-like H3K4 histone methylase component WDR5A like

Expression pattern