| Gene ID | Annotation |
|---|---|
| Am02G021430.1 | Pectin lyase-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G021430.1 | mRNA | Chr02 | 146276654 | 146280478 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00295.20 | Glyco_hydro_28 | 125 | 439 | 8.70E-101 |
| PF12708.10 | Pectate_lyase_3 | 92 | 353 | 1.90E-08 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0005576 | extracellular region | Cellular Component |
| GO:0016829 | lyase activity | Molecular Function |
| GO:0045490 | pectin catabolic process | Biological Process |
| GO:0009835 | fruit ripening | Biological Process |
| GO:0071555 | cell wall organization | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011050 | Pectin lyase fold/virulence factor |
| IPR012334 | Pectin lyase fold |
| IPR006626 | Parallel beta-helix repeat |
| IPR000743 | Glycoside hydrolase, family 28 |
| trEMBL term | Description |
|---|---|
| A0A396JQY0 | _ |
| SwissProt term | Description |
|---|---|
| PGLR_ACTDE | Polygalacturonase |
| KO | Description | Enzyme |
|---|---|---|
| K01184 | polygalacturonase | [EC: 3.2.1.15] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G57510 | Pectin lyase-like superfamily protein |
| Medicago sativa L. | MsG0780040513.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g10740.1 | polygalacturonase, putative, expressed |
| Cucumis sativus L. | Csa020310 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000019s00002184.1 | _ |
| Codonopsis lanceolata | Cl_chr04_47070T | _ |
| Arachis hypogaea L. | AH16G04380.1 | Polygalacturonase like |