Gene detail

Detail information of Am02G019580.1 Annotation

Gene ID	Annotation
Am02G019580.1	E2F transcription factor 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G019580.1	mRNA	Chr02	138021151	138025980	-

Sequences

CDS:

>Am02G019580.1
ATGTCCGGCGGCGCTGGACCTTCCGACCGTCGTGCGTCGCCTCTGAAGGAGACTGCCGGCGTCCTGAACCGGCCGCCGCTGAAACGCCATTTGGCTTTTGCGTCGACGAAGCCACCATTTGCCCCGCCGGATGAGTACCATAGCTTTGCCTCGGTCGGCTCCAGAAGAGTCGCCGATCATGAGACTGAAGCCGTCGTTGTTAGATCTCCATTCATAAAGCGGAAGAATGGGGTTAATGGCAATGAAGGAGACTCACAACAGTGGAGTAGCAGCCCTGGACAGACTTACATAATGAATAGCCCCTTAAAAACTCCTGTGTCTGCAAAAGGGGGAAGGGCAAGTAAGTCAAAGGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCGAATGTCGGTTCCCCCTCTCCTCTTACTCCTGCTAGCAACTGTCGCTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAGCATGCTGAGGATGGTATTCTTGACCTTAATAAAGCAGCAGAGACTTTGGAGGTTCAAAAGAGGAGGATATATGACATCACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAATCTCAAGAACAGAATACATTGGAAAGGAATTGAATCTTCGACTTCTGGGGAGGTGGATACTGATATCTCTATGCTTAAGGCAGAACTTGAAAAACTCTCTTTGGAAGAGCAGAGACTAGATGATCAAATAAGGGAAACCCAAGAAAAACTGAGGGGTTTGAGTGAAGATGAAAGCAACCAGAAGTTCCTTTTTGTGACTGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCACATGGAACCACTCTGGAAGTCCCTGATCCCGAGGAAGCTGTTGACTATCCTCAGCGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTATCAGTCAATTTGAAGAGAAATTTGAGGAGGTTAATGGTGCTGAGCCCACCATGAGCTTCCCTCTTGCTTCAAGTTCAGGGTCTAATGAGCAACAAGTGACAGAAATGGTTCCTGCTGAATGCAGCGGAAAAGAACTTGAACCTCAACCACAACTCTCGTCTCAAGCATACTCTGATCTAAATGCTTCACAAGAATTTGCTAGCGGCATGATGAAAATTGTCCCTTCAGATGCTGATAATGATGCAGATTATTGGCTACTATCAGATGCTGACGTTAGCATAACAGATATGTGGAGAACAGATTCAGCTAGTGTTGATTGGAATGAAGTGGATATGCTTCATTCCGACTTTGGAATGATCTCAAGGCCGCAAACTCCATTGCCTGAGTTTCCAGATGCACCATCCACAGTAGCTAACCCGAGTCCAAGGTGA

Protein:

Promoter(3k):

>AM02G019580.1
GCTAGTGGAATCTCACACCGACAGCTACCTTGTCACACTTTAATGACCATAGTATGTTTTCTACATCGTGATTTTGGTGATCCTCCAAATATATGCTTAATGAATATTAGGGATTTATATTGTGTGCAGTCAACAAAGCTACACAATCACTATAATTATTTATATTGGTTAATAATTATTTGGGCGTTGACAATCAATATAAAATATTTATATTGGTTACTCCTGTCATGTCAGTTTTTTTCTTTTTAAATAAAAATTATTTTTCAATACACTAAATACACAAACCATAAAGCTTGGTTAAAGCTTTATTAACCAAATACGATGATCCCAATTTTAAAGGCAAAACAACTATTCTTCCGATCAACTTTCTATATAATCAAAACATATGCCAGCACATTTACATTTTTAGACATCACCAAATTTTAACATTTGTTATAATTTAGGGGCAAAATAGACAGTATCACTACAGTGCGCTGCAGTGACGTTTTTGACGCGCTACAGTACGCTTATGTCACTCTACAGTCTGCTACAGTGACGTTTCTGACGCGCTACAGTACCAATACATTTTTTTTAAAAAAAATTCAATTTAAAAAACAATTAGTCACTATAAATCAATTTTCACTATTTTTATAAAAACAATTAGTCACTATAAATCAATTTTCACTATTTTTATAATCTATTCAAACTACTAAAATTAATAAAATAATTAGTCAATATAAATCAATTAGCCACTATCCATTGTCAAAAACTAATCAATTTAACTACATTTGTTAAAATCAATCAATTTAACCACTACAAAAAATTACCAAATAATTATTTTATAATTACTAAAAAAGAGTAAAATGCCAATGCCCACAGGAGTGTCAACGAGAGAGCCAATGAGAGTGGCAACGAGAGCGCCAACGATAGAGGGAGAAAAAACTGATTGAAAACTGCATCAAAAGCTGCAACTGACGCAGCAAAAGGACCAAAAACAACAAATTTTAAAACCAACTTTTTTTTACAGTTTTTTTTCCAATTTTTTTTTTCAGTTTTTCTTTCCATAAAAAATCACTTTTTTGTCAGTTTTTTTACTAAAAACATAATTTTTTTAACTATTTCTATAATTTACTCAAACTGCTAAAAGTAATCAATTTAACTACTAACAATTGTCAAAATTATTTATTCCAAAAAAATAAATTACTAAATTAATATCACACTCAATAATTAAATAATTTAAAATTTATTATTTACTATAATCTCTCCATTAAAACTACTAAAATCAATCAATTTTTCATGTAATAAATAAAATCAATCAATTTAACCACTAACAATTGTAATATTAAATCATATAGAAAAAAGGAGAAAACATGTGGCAACGGGAGCGGCAACGAGAGACTGATAACGAGATCAACAACAAGAGCGGCAACGGGAGTGCCAACAAGAGAGGGAATGAGAGCGCCAACGAGAGTGCCAACAAGAGAGGAAACGAGAGCGACGGGGCTGCATATTTTACCTTTTACTCAATTATTAATATTATAACAAGATACCGATTTTGTTTTAACTTTTTGCAACACAACTATTTTAGTAAATTCACCGCTAAAAGACAAAATTTAAAAGACAAAATTTGCAACACAACGAGAGCGGCAATGCGAGACTGGCAATGGAATCGACAACGAGAGCGGCAACGGGAACATGAGTGGAAACAAGAGAGGCAAGGAGAGCGCCAACACAGTGCCAACGTGGATGCATATTTTAAAAAATCTTATTTTCTTTTTTCTTCATTTTTACTCTATCTAAAATTTATTATTTACTATAATCTCTCTATTAAAACTATTAAAATCAATCAATTTAACCACTAAGAATTATAAAAATACAACTTTAGCCACTACCAAACTTTACAAAATAACTTACTTATAATTAAACGAATATGATTTAATTAATATTAAATCATATAGAATAATATGAGTTAACATGTGGCAACGAGAGCGACAACGAGAGACTGGCAATGAGAGCTGCAACGGGAGTGGCAACGAGAGAGGTAACGAGAGCTCCAACGGGGGTGCCAACGGGAGGGTCAACGAGTATTCAAATGGGAGTGTGAAAGGGGATGCATGTTTTACCTCTAATGTCCAAATACATTATTATGGATCAATGTAATTCTGATTGTCAATCTCCTTTATTTTCTTCGACTCAATATAATTTTCATTTGTATCTTATATGACATAATACCTATCTCTTTCCACTTTGAATTTCAAATCATACATTTTAGACATTGTTCACAACTTATGATTATCTTCCAAATTACTATTATGACTTTATGGCAATACACCGACCATACAGTATCACTAGTCATATGCACGGGTAAAATACTAGTACTAGTTCAATAAAAACATGTTTTCAATTACTCCCAATTCAATACGATGATCACACATGTAATATGCGGTTTCCAACGTGCGTTGTACTTGCAAATTAGGAAGATTATGTTCGTGTTACCTTAATATTTTTTTATCAATATTTTTATAAAATTACTATATCTAACATACAATTTTATGTTCCAAAACAGGATTATTTCTACAAAACTCTGTTTCTCTTGGGTCAAAAAGTCTAGTAAACAAAATTTCAGAAAGCAGGAAGAAAACTAAAAAGAAAAGAAAAGCTTGGGACCAGTTTCACAATATACTACTAAAAAACAATGACTTTCACTTAATAATTAATAAGAAACATATTAGTTATTATGTATTTATTATTTTGTTTTTTTGTTGCGCACGGAGTTCCCTCCACATCTATCCGAAACAAAATTCCCTCCCTCTTTCCCTCGTTTTCTGCTATCGCCTCCCCCACGCCCTAAAACTCAACTCCCTTATTTTCTCCAAACCCTTTTATACCCCCCCTCTCTCTCTCTCTAAACCCCACTTTCTCTCTCTAAAACCCTACTTCATTCCGTTCCTTTCCCATTTCTCTCCAACTTTCTCTCCAATTCGGATTTGCCGCCTGGACCAACGCCACTTTCCCGGCTCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF16421.8	E2F_CC-MB	227	327	1.10E-34
PF02319.23	E2F_TDP	148	211	2.90E-26

Gene family

Gene family	Subfamily
Transcription Factors Family	E2F-DP

Gene Ontology

GO term	Description	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0051726	regulation of cell cycle	Biological Process
GO:0140612	DNA damage sensor activity	Molecular Function

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR037241	E2F-DP heterodimerization region
IPR003316	E2F/DP family, winged-helix DNA-binding domain
IPR032198	E2F transcription factor, CC-MB domain
IPR015633	E2F Family

trEMBL

trEMBL term	Description
A0A1S2Y155	_

SwissProt

SwissProt term	Description
E2FA_ARATH	Transcription factor E2FA

KEGG

KO	Description	Enzyme
K06620	transcription factor E2F3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G36010	E2F transcription factor 3
Medicago sativa L.	MsG0480020472.01.T01	_
Oryza sativa L.	LOC_Os12g06200.1	E2F family transcription factor protein, putative, expressed
Cucumis sativus L.	Csa011825	_
Glycyrrhiza uralensis Fisch.	Glyur000262s00020220.1	_
Codonopsis lanceolata	Cl_chr06_16810T	_
Arachis hypogaea L.	AH12G35000.2	Transcription factor E2FA like

Expression pattern