Gene detail

Detail information of Am02G017930.1 Annotation

Gene ID	Annotation
Am02G017930.1	auxin response factor 16

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G017930.1	mRNA	Chr02	131683667	131687121	-

Sequences

CDS:

>Am02G017930.1
ATGATTACATTTATGGAAACAAGGGAGAATTCAGAAGAAGTGGTGGAAAGGTATTTGGATCCTCAACTATGGCATGCCTGTGCAGGTGGAATGGTTCAGATGCCAGCTTTGAACACTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGAACTGTTAACTTCAAGAATTGTCCCAAGGTTCCACCTTTGATGCCATGTAGAGTGGCTTCTATTAAGTACATGGCTGATCCTGAAACAGATGAGGTTTATGCCAAGCTCAGGCTTGCTCCTCTCGATGGAAATCCATGTAATTATGACCATGATGTTGCTGGAGGGATCAATGGTCCTGAAAATCAAGATAAGCCTCTTTCATTTGCAAAGACACTGACACAATCTGATGCTAACAATGGTGGGGGGTTTTCTGTTCCTAGGTATTGTGCTGAGACAATTTTCCCTCCTTTGGACTATATGGCGGACCCTCCTGTTCAAACCATTGTTGCTAAAGATATTCATGGTGAGAAATGGACATTTAGACACATTTATAGGGGCACGCCGAGGCGACATTTGTTAACCACTGGTTGGAGTAATTTTGTCAATCAGAAGAAGCTTGTTGCTGGGGATTCCATTGTGTTTTTGAGGGCGGAAAATGAGGAACTTTGTGTTGGGATTCGAAGAGCTAAGAAGGGTATTGGTTGTGGACATGAGGATTCCTCCGGATGGAATTCTGCTGCAGGAAATTGTCCTGTGCCTTGGTTTGAACAGAATGAGAACCAAATGGTGAGAAACATTAACAACAATGGTTTGAATCCGGGTGTGAATTTGACTGGGAGGGCAAAAGTGAAGCCAGAAGCAGTTGTAGAAGCTGTAAGACTTGTTGCTGATAGGCAACCTTTTGAGGTTGTTTACTATCCTCGAGGTAGTACTCCGGAATTTTGTGTGAAGGCTCAGTTAGTTGAAGCAGGAATGCAAATTAGATGGTGTTCTGGTTTAAGGTTCAAGATGGCCTTTGAAACTGAGGACTCCTCCCGGATAAGTTGGTTCGTCGGAATTGTATCTTCGGTTCAGGTTGCTGATCCCCTTGTCTGGCCTAACTCTCCTTGGAGGTGTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAAGGTGAGCCCGTGGCTGGTTGAATTAGTACCAAATATTCCTTCCATCAACCATTCCCCTTTCTCACCACCGCGGAAGAAATTGAGGCTGCCTCAACACTCCGATTTCCTCCTTGATGGCCAGATTCATGTGCCAACATTTCCCGGTAACCTTCTAGGTGCCAGCAACCCATTTGGTTGTCTACCCCAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCATATCAGATCTCCACCTCAGTAAAATGCAATCAGGTCTATTTCCGGCTGGTTTCCTGCCACTTGATCACACTACTGTACCACCGAGTGTTGCTAATAACCGACTACTGCAAAAGGCCAACATGAGCGAGAACATCTCTTGCTTACTATCTATGGCAAGTTCCACTCAGTCTCCAAAGAAAGAAAATGATGAGAAGACACCTCAGCTTGTGCTTTTTGGCAAAAGAATTCTCACTGAGCAGCAGATCTCTCTGAGCAGCTCTGGCGATACAGTCTCCCCAGTTATTACTGAAAATTGTTCATCAGATGGAAATGACGATAAAGCGACTAATTTTTCTAACGGATCTGGATATACTCTTCATCAACAAGGCTTACGCGAAGGCTCCTCATGTGAGAGGTCCCAATGGTATAAGGATAACCGCCACGAAACTGAGGCCGGTTTGGAGGCTGATCAGTGTAAAGTTTTTATGGAATCGGAAGATGTTGGTCGGACAATTAACCTCTCTTTGCTTGCGTCTTATGATGAACTATACACAAAGCTTGCAGACATGTTTGGCATAGAAAAATCTGAGATGCCAAGTCATGTGCTGTACCGCGACGTAACTGGAGCAGTCAAACACATTGGAGATGAACCATTCAGCAACTTCACAAGAACAGCAAGGAGGTTGAATATTCTAATGGATTCTAGCAGTGACAATTTAGTAGTTTAG

Protein:

Promoter(3k):

>AM02G017930.1
TTATTTCACCTAAACAATTCTTATTTAATCTATCCTTGAAAAATATCATTTTAGTTCCCGACAAATGAAATTTATGTTATTGAAATAAAAATGGTTTATATATATAAATGAATTATCGAGCTGGTTCTTGAACCTAACGAGTTGAACCATAGCTAACTCAAGTTCAGCTCATCTGGTCTATGAACCAAGTTCAACAGCTATTTATCGAGTCGAGTTTCGAACTATGTTCGAGATGGTTCGGTTCATTGTCAGCCCTATGATCCGCCATTTTTGTTAAGCTTTGGATACACAACCGGCAAATGCCGAAATTGTTAGACTAGATATCATAGTCTGGGTTCGAACTCGGAACATCGCAGTTATGTGTGTGAGTTTCTATTAACACTTGCTACTCCGTCTAAAAAAACTAACAATTAAAAAACAGTTTTTTTTCGAGTTCTAAATTAAACGTTTTATCTTTCACAAATTATTAATACATCAATACAAAGTAAAATTTCTCACATTAATTTTCTAGTGCATTACACGGTTCTATGCTCTAAAATATATAATATATAATTACTATACATTTAGATAATAAAATATGTCTAATCTCAAAAAAAGATAATAAAATATGTATACTTCATATCTATATTAGGAATCGGGCATGTTCATTTCAACTACATTAAAAGTCACTCATATAAAAAAAATTAATTCATTGACAATGTAAAAAAATTTACACCACGGCTACACAGTACATACCAATTAAACTCAAAATATATTGCCTTATTACGGACATAATTTGTCATGTGTATTCTACATGTATACGCATTACTTATTTTACTCCTTCCGTCCCATATTATATGTCGTTTTTGGTCATTTCACACATGTCAAGAAAAGTAGTTAATTTTCTATGGGAAAGAGAAATTGTGAATTAATTTACCAAATTAACCTTATTAATGATGACATTGAGAAGATAAATTAGTAGAGTTATGAAAGAGATATTATTAAATAACGAAAGGTATGGTAGGAAAAAAATATTAATGTTCATTGGAATTCTAAAAAGTCATGTATTATGAGACAAATTTTTTTGGCTAGAAAATCATATAATATGAAAATGAGGGAGTATTAATATTTTATTGGGATTCTAAAAAGTCATGTATTATGAGACAAATTTTTTTGGCTAGAAAGTCGTAATATACTAATATAATATAGGAGGGAGAGAGTATATAAAACAAATATTTTGTGAACGAAATTACACAATATATCAAACACGGCTTAATTTTTTAGAAAAAAAATATTTAACTTGCCTCACTGGACATTTCAAAATGTATCTGCACTATTGTACAACTGACTCAGCTTCTTTTCACATATCTTTGTTGTTTTGCTGGCTTCTAAAGATACGGGTTTTACTTTTCAGATCCGACTAAAAAGGCAAAAGCAAACTTACAAACATCAGGTTAAAAATATTATTATTTTCTGACAATATTAAAATTATTATTATTATTATTATTATTAGTAGGATAAACAGTTATTTTAGTCCCTAAACGTGTGAAATACTGGTATTGTATTGGTTGAATGAATCAAATTTGCAAACTTATTTTCAAATATCTCACAATGATCATTTTCGGTCCATAAAATTAGTAAAAAAATAGATACCGAGGGATGTATTTGCAATTTAAATACATTCAAATAGTATATTAATAATATCTCACAAAGATAAAAATGACTATTTACCATTATTTAATTTATTTTGTTAATCAGCTAATACTTTACTCAAGAAAAAATGAAAAGGTAGCAAGAAAAACCATTTAATTGAATTAAATAATAAAAGAAGTAAGAAAGCATAGTTTAAAGAGGCGGACTCGACTAGTACCCAAGTTCGATCGTAGAACAAATTAGAGTCGGACTATACCTACATTATGGCCGAACTTCGAATTCAGGGCTCATTTCCCCGGACGCCGGAGCGAGGTCTAAGACCCCCAAAAAAAAAACATAGAGTCCCACCCACAGTATTGTTACGAAAGTCCACCCACCACTACCCTCTGATATTTCGTTTCCTTATTAAAAAGCAACTCCTTTATTTTTCTGTTTAGCTTTCGTGTGACTACTACTACTGTACTGTGTGTGCTTTTGGAATCTTGCATTGCATTGCATCATCCACAACCAAAATTACAAAACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTGCGTTTGCCTTCTTATCTGTGCATCCATGTATGTCGGCCATCATCTCGTGTCTGCCTTTGAATATTTGAATCCCGAATATTCTGTTTTGTTTTTCTCCTCTTCTTTTTAGTTACTCAGATTTTTCTGCTTAAATTTTGGAGATCTTCTTGCAGAGATTCATGTGTACTCAGTTACTCATATTTTTATTTATTCTTCCTTTATTATCAGAAGTCAGAACACACAGTACAGAACAGTGAGTGATTGAGACTGTTGCGTTGTAACATGGATCTTCAACTCTGTTTATTTAACCTGTTCAGGTTTTTACAATGATCCAATTTCACTCTCTCACCAACCTTGCATTCAAATTCTCTGTTTGAAACTTCTTCTATAAACAGAATAGGAAAATAAATTAATAAACTTGGTGGCCATGTATGCACTATTTCCATGAAATTTCAAATTTTTTGGTAACTTGGAGTTTTCCCATGACAGCTACCCTTTGACATCTCCAATTGTCCAACACATTAGGGTTTTCATGGTGTCAATGTTTTGAAGATAACAAGGTGGTTAATTGACAGAAAAATTGAAGGGGAAAAAAAACAAGCTTCTCAATTCTGAATTGGCCAGTTATTCAAAGAAACTGTGCAATCACTTATCAGGTAGGAAACTTATAAAATGTAATTTTACACATCTTTTAATTAATTCATGATGGAAGATAAAAAAAGAATGTTTTTTTTTTGTATATCATGATTTTTGTCATCAATATTCAATATTATTATTGCCTAATTTGGTAATCTAATACGGTTGTAGAAATTCTGCAGTGAAAGTTGTGTGAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06507.16	Auxin_resp	285	368	3.00E-29
PF02362.24	B3	122	223	1.00E-22

Gene family

Gene family	Subfamily
Transcription Factors Family	B3
Transcription Factors Family	B3-ARF

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0048829	root cap development	Biological Process
GO:0007389	pattern specification process	Biological Process
GO:0051301	cell division	Biological Process

InterPro

InterPro term	Description
IPR000270	PB1 domain
IPR015300	DNA-binding pseudobarrel domain superfamily
IPR003340	B3 DNA binding domain
IPR010525	Auxin response factor domain
IPR044835	Auxin response factor

trEMBL

trEMBL term	Description
A0AAN9SFI3	_

SwissProt

SwissProt term	Description
ARFR_ORYSJ	Auxin response factor 18

KEGG

KO	Description	Enzyme
K14486	auxin response factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G30080	auxin response factor 16
Medicago sativa L.	MsG0180003578.01.T01	_
Oryza sativa L.	LOC_Os06g47150.2	auxin response factor 18, putative, expressed
Cucumis sativus L.	Csa011935	_
Glycyrrhiza uralensis Fisch.	Glyur000081s00006796.1	_
Codonopsis lanceolata	Cl_chr02_00440T	_
Arachis hypogaea L.	AH08G13420.1	Auxin response factor 18 like

Expression pattern