Gene detail

Detail information of Am02G017000.1 Annotation

Gene ID	Annotation
Am02G017000.1	Structural maintenance of chromosomes (SMC) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G017000.1	mRNA	Chr02	128344461	128359380	+

Sequences

CDS:

>Am02G017000.1
ATGCCGTCGCTACATTCGCCGGGGAAAATCGTCCGGCTGGAGTTAGAAAACTTCAAGTCATACAAGGGTCACCAAGTCATCGGTCCTTTCTCCGACTTCACCGCCATCATCGGTCCCAACGGTGCCGGCAAGTCCAACCTCATGGACGCTATCAGCTTCGTCCTCGGCGTTAGGACCGGCCAGCTTCGTGGTGCACAATTGAAGGACCTCATCTATGCCCTAGATGACAGAGAGAAGGAGCAGAGAGGACGTACGGCATTCGTTCTTCTGGTTTATAAGCTTGCTAACAATTCCGAGATCCAGTTCAAAAGAACCATCACCGCTGCCGGCGCCAGCGAGTATCGCTTCAACGGTAACGTTGTTACTTGGGACGTTTACAATTCTAAACTCAAGGCCCTCGGCATTCTCGTCAAGGCTCGCAATTTTTTAGTCTTTCAGGGAGATGTGGAGTCCATTGCTTCCAAAAATCCCAAGGAGCTCAGTGGTCTTATCGAGCAGATATGTGGCTCTGACGAGCTCAAGAAGGATTACGAGGAGTTTGAAGAAAAAAAAGCTGCTGCTGAGGAAAAATCAGCACTTGCATATCAGAAGAAAAAGACGGTTGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTCCGCTTGCAAGATCAACTGAAATCTACAAAGAAGGACCATTTCTTGTGGCAGTTGCTCAATATAGAAAATGATACTGTTAAAACAACTAAGGAACTTGAAGACGAAAAGCGAAGTCGTGAAGATCTTATTAAAGACCTAGAAATTTTTGAATATGAAGCCGGTAAAAAGAAGAAAGAGCAAACCAAATATCTGAAAGAGATTGCAATACGTGAGAAGAAAATTGCCGAGAAAAGCAACAAGCTTGACAAGAATCAACCTGAGCTTCTGAAGTTAAAAGAAGAAATGGCTCGTATAAAAACAAAAATAAAGAAAGGGAAGAAGGAGCAAGAAAAAAAGAAGGAAGAGCAGAAGAGGTATGCTGCTGATATAGCAAAGTTACAAAGAGATATTCAGGATCTTGAGGCAAAAATGGAAGATCTTCAGAAAAAGGGTCGAAATGTTGGCGATCAGCTTAAGTTAGATGGCGATGACTTGGAAGAATATTTTAGAATCAAAGAGGAAGCTGGGATGAAAACCGCAAAGCTTAGAGAGGAAAAAGAGCTTCTTGATAGGCAGCAACATGTTGATAGTGAAGCTCAAAACAATTTGGAAGAGAATCTTCAACAATTAAGAAACAGGGAGTCTGAGTTGGATTCACAGAGAGAACAGATGCAGGCAAGGCTCAAAAAAATACTTGATAGTTCTACAGAAAATGAAGACATTCTTAGAAAATTGATGGAAGAACAGCGTTTGATGGTGGTCAACCATAGTGAATCTGAGAGAAAGTATAAAAGTTTAAAGCAAAGAATTGGTGAATGTGAAGATCAACTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTGGAGACTCTAAAACGCCTGTATCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCCATTACAGTTGCTATGGGTAAATTCATGGATGCAGTTATAGTTGAAGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTACAAAATGTTCGCGTGAAGCCAATAATGGAAAGATTACGCTCATATGGGAGTACAGCAAAACTGTGCAAGTTTGATCCCTCCCTGGAGAAGGCAATTCTTTTTGCTGTTGGGAATACTCTTGTTTGTGAAGATCTGGTCAAGGCCAAAAATTTAAGCTGGAGCGGTGGTGAGAGGCATAAAGTTGTAACTTTGGATGGGATTCTGCTGACAAAATCCGGTACAATGACTGGTGGTACTAGTGGTGGAATGGAAGCAAGGTCAAAAAAGTGGGATGACAAAAAAATTGAAGGAATTAATAAACAGAAAGAGCAGTATGAATCAGAGTTGCAAGAGCTAGGATCAATACGAGATATGCACCTTAAAGCGTCTGAAGTAGCTGGAAAAATTAGTGGACTTAAGAAGAAAAAGCATTATGCTGAGATTGAGGAGAAAAGCATTAACGACAAGCTTTCAAATTTGAGTAAAGAAAAAGAAACCGTTGAAAAAGAAGTCAAGCGCATTAGTCCAGATCTCCAAAAGTTAAAGGATGCCGTTGACAAGAGGAATGCGGAATTACGCAAGCTTGAGAAAAGGATAAATGAAATCACTGATCGGATATATAAAGACTTCAGTAAGTCAGTTGGGGTTGCAAACATTCGCGAGTACGAAGAAAATCGGCTCAAGGCTGCTCAAAGTGTGGCGGAGGAAAGGCTGAACCTGAGGAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACACAAGTTCACGAATTCAAGAATTGGAATCTTCTCTAAGTACTTTAGAGAATGATTTACAAAGGTTAGGGAACAAAGAGGCCGAAGCTAAGTTAGCTGCCGAGAAGGCTAATGAAGAGATCAATCAACTTAAGGAAGAAGCTAAAGAGTGGAAATCAAAGTCTGAGGAATGTGAAGAGGAAATCCAGGAATGGAAGAAGAAGGCTTCTGTGGCCACAACGAGTATAGCCAAACTTAATCGTCTGATAAACTCAAAGGAGGCACAAATTGAGCAATTGATGGTGCAAAAGCAAGAAATATTAGAGAAGTGTGAATTAGAGCAGATTAGCCTTCCGACCATATCCGATCCCATGAATACTGGTAGCTCAACACTAGGTCTAGTTTTTGACTTTGATCAGCTCAGTAGGACACTGAAAGATAGGAGACACTCTGATAGGGATAAAGTTGAGGTAGAATTTAAGCAAAAAGTGGATGCATTGATATCTGAGATCGAAAGAACAGCACCCAATTTAAAGGCATTGGACCAGTATGAGGCTCTGCTTCAAAAAGAAAAAGCTGTAGCTGACGAGTTTGAAGCAGTAAGGAAAGAAGAGAAAGAGATAGCGGATAGATTCAATGCAGTTAAGCAGAGCAGATATCAGTTGTTCATGGAAGCTTTCATCCATATATCTGGTTGTATAGATAAAATATACAAACAGCTTACAAAGAGCAGTACACATCCTCTGGGTGGAACAGCATACCTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGTTTCCGAGATATGGAACAACTATCTGGTGGGGAAAAGACTGTTGCTGCTCTTGCGTTGCTATTCTCCATCCATAGTTATAAGCCTTCACCGTTTTTCATATTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCCAAGGTTGCTGGTTTTATTCGTTCAAAATCTTGTGAAGGAGCGAGGGCTAGTGAGGACACCGATGGTGGAAATGGTTTTCAAAGTATTGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAAGCGTTAGTTGGGGTTTACAGGGACTCTGAAAAAGGATGTTCGAGTACTCTTGTATTTGATCTTACTAAATATCGGGAGTCCTGA

Protein:

>Am02G017000.1
MPSLHSPGKIVRLELENFKSYKGHQVIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYALDDREKEQRGRTAFVLLVYKLANNSEIQFKRTITAAGASEYRFNGNVVTWDVYNSKLKALGILVKARNFLVFQGDVESIASKNPKELSGLIEQICGSDELKKDYEEFEEKKAAAEEKSALAYQKKKTVVMERKQKKEQKEEAEKHLRLQDQLKSTKKDHFLWQLLNIENDTVKTTKELEDEKRSREDLIKDLEIFEYEAGKKKKEQTKYLKEIAIREKKIAEKSNKLDKNQPELLKLKEEMARIKTKIKKGKKEQEKKKEEQKRYAADIAKLQRDIQDLEAKMEDLQKKGRNVGDQLKLDGDDLEEYFRIKEEAGMKTAKLREEKELLDRQQHVDSEAQNNLEENLQQLRNRESELDSQREQMQARLKKILDSSTENEDILRKLMEEQRLMVVNHSESERKYKSLKQRIGECEDQLRELKADRYENERDAKLSQAVETLKRLYQGVHGRMTDLCRPTQKKYNLAITVAMGKFMDAVIVEDEKTGKECIKYLKDQRLPPQTFIPLQNVRVKPIMERLRSYGSTAKLCKFDPSLEKAILFAVGNTLVCEDLVKAKNLSWSGGERHKVVTLDGILLTKSGTMTGGTSGGMEARSKKWDDKKIEGINKQKEQYESELQELGSIRDMHLKASEVAGKISGLKKKKHYAEIEEKSINDKLSNLSKEKETVEKEVKRISPDLQKLKDAVDKRNAELRKLEKRINEITDRIYKDFSKSVGVANIREYEENRLKAAQSVAEERLNLRSQLSKLKYQLEYEQNRDTSSRIQELESSLSTLENDLQRLGNKEAEAKLAAEKANEEINQLKEEAKEWKSKSEECEEEIQEWKKKASVATTSIAKLNRLINSKEAQIEQLMVQKQEILEKCELEQISLPTISDPMNTGSSTLGLVFDFDQLSRTLKDRRHSDRDKVEVEFKQKVDALISEIERTAPNLKALDQYEALLQKEKAVADEFEAVRKEEKEIADRFNAVKQSRYQLFMEAFIHISGCIDKIYKQLTKSSTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASEDTDGGNGFQSIVISLKDSFYDKAEALVGVYRDSEKGCSSTLVFDLTKYRES*

Promoter(3k):

>AM02G017000.1
TTCAACCTCTGCCAATGTTGGTGAATCATGCTCAAGGGAATTGGAGTGCAGTCCATCATAACCCTACAAAAGCGATATTGATTTAGTGACAACCCATCAAAACAAGTCTTTTTTGTAGACACAATATAATTATGAGTTTGTACATCATACCTTGAAAGCTCACATGCACATGGTAGTCCGTGTGTGGTCCGGAGCGTGTGTCGACATAATGATGGGTTAAGTGAAACGGATCCAGTGTGTTGCATCTCATCCAAAATATGGTCTATAGCATTAGATGAAACTAAACCCTTAATTTCATCAAAAATCTTCTTCTTCAAGTGGTGTACTTTCACTCTACTCAAACTATGCTCGAAGTGCATTTTAAGGTCAGAATGTTGTATCCTAAGCATGGTCTGCATTCCATCCCAGCACTTACACAAATCTCCCCTACTGTCTCGTAATATTTGCTTCAAGTGAGAGTGTGCAGACTCAACTCTGTTGGTGGTAGTGTTGCCAAGGTGCATATGGTTATTTATCCATGCATCAATGAATTTTTCCTTGAAGGGGTCTAGCCAGGTGGTCCTGACATACTCTATGAAACTGGGATAAGGTCCTGCCAAGTCGTTAAACAGACCCAACTCATAATCATACTCTTCTGTGGTCTTCGCATGCACAACAGGTTGAAATGCACCCATAATGTCATTAACAATAGCTTGGTCTTTCACAATGAGCCTTGCTTTGGCCCTCACATTTTTCTTAATGTGAAATTGGCACAACAAGTTTGCAGATGTTGGAAATATTCCTGCCAGAGCATTCATCATACCCGTGTCTCTGTCCGTAAGTATGACTTGTGGTACTTCATCCTGTCTCCTAAATAAACCCCTAAATTTCTCAAGAACCCATGCAAAGTTATCCATCCTCTCCCAATTGACATAAGCAAATGCAGCAGAGTAAGTCTTCTCTGTTGATGTTACACCAACGATCTCAACCAACGGATACCTGTACCAGTTGGTTTTATAGGTGGAATCAATCAACAAAACAACCGGGAAGGTGTTTAGAAGCTCAATGGAATCTGGATGTGCCCAAAAGATGTCCTTCACAACGGTAGTTCCCTCTGCAAGTCGAGTCCAGTAAACATAATTATCGCGTTGCAAATAAAACATCAGTTGTTGGAGCTCAGTCCTACCCTCACGCATAGCCGATCTTTGCCTTTGACGACAGTTGTAAATTTGTTTCACAACCGTATAGTTATCATCAGGCTTCATCAATTTCAGCTCATTCAGTATCAATTTTGGCCGAGTATGGTTCCTAGTCATTCTAGCCACTAGATCCTTCTCTTCTGAAGATAACCTACCAATGTACGGACGTCCTTCATGATAAGTAGCCATACCATGGTTATGAGTTCCATTCATAACCCTCAAAATCCATCCTCCAAGCTTCTTAATAAATTTCCCTTTCAGTCTGAACTGACAACAACATTTTCTAGTGTTCGTGCCTTCCTCAACATTTGTCTTGTAAGATCCAGCTTTATCACAAATCAACATGCAGTATTGTTTACCTGATCGTCGTCCGGTGTCAGATCTTCCTATAACAATCACCATCCCAAGAGATTTTCCAACCGCACACACCCACGTCAGCAGCTCCTCACGACTAGGGAATAACTGAAATTCAATTACTAAGTGTCAGTTAAATAAATTGAATAGTTCGCTAAAATTAAAACAACTAATTCATTATTACCGTATCCGTTTTGAACGAACTAGTAAAATCTTGGGATTCTACGACGTCAGTTGACATCTCATCTGCTACAGTTGGGATTATGCGCCTGTTCGAACGGCCTTATGCGAACACTGTTCGAACGACCCTGTTCGAACCAAGCAAAGTCACACCCCATTAAACACTTGTTCGAACACGATCATTCGAACATGTTCGAACGACCCTGTTCGAACGGAGCGCGAGTACAGAAAAAAAAATGGCGTGAAAAACTGAAAACAGAACCAAAATGAAAAAAGTTTGGTAGGGTTATTACCTTGAGCTAGTTGCCAATGTTGGGTAGTTGAATAGGAGTGAATGATGAATGTGAGGATGGGTGGGTTTGGAGTGGAGAGGGGGGGAGGTTTGGGATTTTAAAGGGGTGTGTTGTGTTGAAGGAGAAGAAGAGGGAGAGGGGTAGAGGGGGAAAATCAATTTTAAGTGGGGTTAGTTTGGTAAATGTGTAGGGTGACGGGGTGTGTTTTGAGTAGGAGGGGGTGTGGGGAAAGCAATCACCAAAACTATTGTTGACATGGTAACCAGTTCGGCCCAAGAGATTAGATCAGGCTATACGATTAATCTCATCAGGAAATTAGTGTGTCTTGACTGGTAGGTTAAAGTTACTCACACCTAGAGAGAAAGGAACAAATGTGCGGATTAGCTTGCAAACTTTGGTCTACAAATAACAGATAACGATCCTTTGAGTTCCTCCAGAAGAGCTTCAACGTGTCCTCATTGATGACTGAAATAGGTCTTCCATACCAAAAATATTAGATTAGTGTAAAAAAAAAGGAACGCTGAAAGCATTGAGGATGAGACTCTATTAAAAGTTAAAACTACTAAACTTTTTTTTGACCAATATTAGACTAGTACCGGTGGGTGCCCCACTCTTTGGTGCGTACGAAATTAGTGGCGAAATTAGAATCATGCTTCCTGCACTCAAGTTGTTAACCGGGACCTGGGTCCTCTACAGCAACTGCACGGTGCAGTAAGCTGAAGAGTTTTCTCTCTCTAGATTTAATGGCTCATCAGCAGAGCTGCCGTAGAGGATCCAAATTCTTGTTAACCGCATCAAATCAAAATCACAAACAATCCCAATGACAACCTAAACGCCCTCCCTCATAAACCTCCCGCCAATTAATTTCCTTCCCCCCTCCTTTCAATTCCCAAACCCTAACCCTTTCTCCCCAAAAATTCGCACTCTTCTTTTTTCCTCGCATAACCAATTAAGTAACTACCCTGTTCAATCAGTTTCAACCACAACCGCAAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02463.22	SMC_N	10	1196	7.90E-44
PF06470.16	SMC_hinge	517	628	3.40E-21
PF13304.9	AAA_21	33	65	1.20E-11
PF13555.9	AAA_29	11	55	7.10E-08

Gene family

Gene family	Subfamily
Epigenetic Regulators	CPC2

Gene Ontology

GO term	Description	Category
GO:0009536	plastid	Cellular Component
GO:0015031	protein transport	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0043130	ubiquitin binding	Molecular Function
GO:0035091	phosphatidylinositol binding	Molecular Function

InterPro

InterPro term	Description
IPR024704	Structural maintenance of chromosomes protein
IPR036277	SMCs flexible hinge superfamily
IPR010935	SMCs flexible hinge
IPR028468	Smc1, ATP-binding cassette domain
IPR003395	RecF/RecN/SMC, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

trEMBL

trEMBL term	Description
A0AAN9QS34	_

SwissProt

SwissProt term	Description
SMC1_ARATH	Structural maintenance of chromosomes protein 1

KEGG

KO	Description	Enzyme
K06636	structural maintenance of chromosome 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G54670	Structural maintenance of chromosomes (SMC) family protein
Medicago sativa L.	MsG0480019892.01.T01	_
Oryza sativa L.	LOC_Os12g44390.1	RecF/RecN/SMC N terminal domain containing protein, expressed
Cucumis sativus L.	Csa021211	_
Glycyrrhiza uralensis Fisch.	Glyur000248s00011322.1	_
Codonopsis lanceolata	Cl_chr06_36360T	_
Arachis hypogaea L.	AH02G08890.1	Structural maintenance of chromosomes protein 1 like

Expression pattern